鲹科鱼类DNA条形码分类系统
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杨龙(1994–),男,硕士研究生,研究方向为渔业资源分子生态学.E-mail:1262804971@qq.com

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S931

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国家自然科学基金项目(42076132); 中国水产科学研究院基本科研业务费资助项目(2021JC01); 国家海洋水产种质资源库项目.


DNA barcode analysis: species identification and phylogenetic relationships of the Carangidae family
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    摘要:

    为了验证 DNA 条形码在鲹科(Carangidae)鱼类物种鉴定和系统分类中的适用性, 本研究自测 6 属 7 种 17 条序列, 同时筛选了 BOLD 数据库中的有效序列, 共获得 25 属 95 种 273 条鲹科鱼类 DNA 条形码序列, 通过 BLAST 比对、遗传距离和系统关系树, 构建了鲹科鱼类的 DNA 条形码分类系统。结果表明: (1)鲹科鱼类属间、种间、属内种间和种内三级分类单元遗传距离的平均水平分别为 0.186、0.169、0.090 和 0.008, 种间平均遗传距离是种内平均遗传距离的 21 倍, 可见 DNA 条形码适用于鲹科鱼类分类鉴定; (2)运用 DNA 条形码技术可以识别出形态鉴定有误的物种, 表明 DNA 条形码可以弥补传统形态学鉴定的局限性, 可对鲹科鱼类形态学分类结果进行精准修正; (3)鲹科鱼类 DNA 条形码分析表明, BOLD 数据库中仍存在一定的“同种异名”和“异种同名”现象, 建议使用该数据库信息时应严格评估信息的准确性; (4)鲹科鱼类系统发生关系研究对物种的分类地位提出了新的见解, 即拟鲳鲹 (Parona signata)和镰鳍波线鲹(Lichia amia)亲缘关系较近, 支持将二者均归为鲳鲹亚科(Trachinotinae)。本研究旨在为丰富鲹科鱼类 DNA 条形码数据, 完善鲹科 DNA 条形码分类系统, 并为鲹科鱼类物种鉴定和系统分类提供分子证据。

    Abstract:

    Species of the Carangidae family are important warm water and temperature marine economic fish. They are also a primary product of future deep-sea fishing and aquaculture development in China. However, as there are many species of Carangidae, and their related species are similar in morphology, traditional morphological identification methods have significant limitations. The accurate classification and identification of Carangidae species is a focus area of resource conservation and sustainable development and utilization. Therefore, research on the DNA barcoding of Trachinidae fish is scientifically significant and has economic value. To verify the applicability of DNA barcodes in the identification and classification of Carangidae, 17 sequences were collected from 7 species and 6 genera, and other valid sequences in Barcode of Life Data (BOLD) were screened. A total of 273 DNA barcode sequences of 95 species in 25 genera were obtained. Then the DNA barcode classification system for Carangidae was constructed by BLAST comparison, genetic distance calculation, and phylogenetic relationship analysis. Results indicated that: (1) The average genetic distance levels of three taxa, intergeneric, interspecific within genera, interspecific, and intraspecific of Carangidae were 0.186, 0.169, 0.090, and 0.008, respectively. The average genetic distance of the interspecific was 21 times that of the intraspecific. DNA barcoding is suitable for the classification and identification of Carangidae. (2) DNA barcode technology could identify species with incorrect morphological identifications, indicating that DNA barcodes can make up for the limitations of traditional morphological identification and accurately correct the morphological classification results of Carangidae. (3) DNA barcode analysis of Carangidae shows that there are still certain “homologous” and “heterologous” phenomena in BOLD. It is suggested that the information accuracy should be strictly evaluated when using the database information. (4) The phylogenetic analysis results of 95 species of Carangidae support the classification of Parona signata as Trachinotinae and provide new insights into the taxonomic status of this species. This study has enriched the DNA barcode database of Carangidae and provided molecular biological evidence for the species identification and systematic classification of Carangidae.

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杨龙,李昂,李步苏,王焕,柳淑芳,庄志猛.鲹科鱼类DNA条形码分类系统[J].中国水产科学,2021,28(12):1523-1535
YANG Long, LI Ang, LI Busu, WANG Huan, LIU Shufang, ZHUANG Zhimeng. DNA barcode analysis: species identification and phylogenetic relationships of the Carangidae family[J]. Journal of Fishery Sciences of China,2021,28(12):1523-1535

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  • 在线发布日期: 2021-12-27
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