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1.
QU Shaoxuan GAO San HUANG Chenyang 《食用菌学报》2007,14(3):6-9
Three types of molecular markers （SRAP, ISSR and RAPD） were used to identify four Tremella fuciformis strains, T6 （white）, T7 （white）, T8 （yellow） and T9 （light yellow）. Twelve SRAP primer pairs, ten ISSR primers and eight RAPD primers were screened, and identification data obtained using the three molecular markers were consistent in that the four T. fuciformis strains were divided into three groups with T7 and T9 clustered together in a single group. Each RAPD primer generated a higher average number of polymorphic bands than either the SRAP or ISSR primers, and the average similarity between the four strains was 81.34%. SRAP markers reflected more genetic information compared with the two other markers, and the average similarity was 68.98%. Genetic information reflected by ISSR markers was intermediate between SRAP and RAPD, and the average similarity was 77.48%. 相似文献
2.
YI Ruirong CAO Hui PAN Yingjie College of Life Sciences Nanjing Agricultural University Nanjing Jiangsu China 《食用菌学报》2007,(2)
Thirteen kinds of yellow and three kinds of white monokaryons were isolated from mycelium of eight Flammulina velutipes strains using the monokaryon protoplast technique. Of these, five yellow and two white monokaryons produced monokaryotic fruit bodies. Clear differences were observed in the color of the different yellow monokaryotic fruit bodies, as well as between the pilei and stipes of individual yellow monokaryotic fruit bodies, suggesting that the yellow color is under the control of multiple alleles. 相似文献
3.
A series of hybrid Flammulina velutipes dikaryons were obtained by crossing yellow and white monokaryons.The color of fruit bodies generated from these dikaryons,and the ratio between dark-colored stipe regions and the entire stipe of individual fruit bodies,were determined.Our data suggest that the expression of fruit body color in the hybrid dikaryons was under the control of factors present in both the white and yellow parent monokaryons,and that multiple alleles exist in both white and yellow color-controlling factors. 相似文献
4.
XIE Baogui LU Qiquan RAO Yongbin SUN Shujing ZHENG Jingui Fujian Agricultural Forestry University Fuzhou Fujian China 《食用菌学报》2007,(2)
A human insulin gene was synthesized using PCR-based methodology, cloned into plasmid pUC18, and the sequence of the inserted fragment was confirmed. A Tremella fuciformis expression vector was constructed and used to transform T. fuciformis yeast-like conidia employing Restriction Enzyme-Mediated DNA Integration (REMI). A total of 21 antibiotic resistant colonies were selected at random of which 18 tested positive for β-glucuronidase (GUS) activity. Genomic DNA was extracted from 10 of the 21 positive transformants and PCR performed using genomic DNA as the template and specific primers for amplifying the human insulin gene, the GUS gene and the Tnos sequence. PCR data showed that the expected fragment was amplified from all 10 isolates demonstrating that they were true human insulin gene transformants. 相似文献
5.
【Objective】Paracoccus marginatus Williams and Granara de Willink is an invasive pest with strong diffusion and fecundity. It has caused serious damage to the papaya industry in Central America, Florida (USA), Guam (USA) and India. Pa. marginatus was first discovered in Fujian Province (Fuzhou and Zhangzhou) in 2017, showing great potential risks to papaya and other fruit crops, as well as flower industry in Fujian province. Because of the small body size and similar morphological characteristics, the morphological identification of mealybugs was inefficient. Rapid molecular identification of different species could be achieved through the use of DNA barcoding technology. Therefore, a technology for rapid molecular identification of Pa. marginatus was established based on the species-specific PCR method. 【Methods】A species-specific PCR method based on ribosomal DNA-28S gene fragment (28S rDNA) was exploited to establish one technology for rapid detection and identification of Pa. marginatus. The additional 10 species of mealybugs (Phenacoccus solenopsis, Dysmicoccus boninsis, Nipaecoccus viridis, Phenacoccus solani, Pseudococcus comstocki, Pseudococcus cryptus, Planococcus lilacinus, Pseudococcus odermatti, Planococcus minor and Phenacoccus madeirensi) were collected in the fields as the contrast. In order to ensure the uniqueness of the source of DNA, the DNA templates were all extracted from one single female adult of these 11 species of mealybugs, respectively. 28S rDNA of the 11 species was amplified by a pair of universal primers (S3660/A335). The obtained partial fragments of 28S rDNA were sequenced. And the phylogenetic tree was established by using a Neighbor-joining (NJ) method. According to the obtained 28S rDNA gene partial sequence of the 11 species and 28S rDNA gene sequences of Paracoccus galzerae in GeneBank database, the sequence alignment and analysis were performed on DNAMAN. 28S rDNA species-specific primers (28S-ParF/ 28S-MarR) for Pa. marginatus were designed by selecting the sites with large differences in the sequence. And then, the specific effects, versatility and sensitivity of the specific primers were examined. 【Results】The comparative results showed that the similarity between Pa. marginatus and Paracoccus marginatus isolate S3-668, KP692333 in the GenBank database was 100%. It was also indicated that the mealybugs were identified as Pa. marginatus by molecular identification. Phylogenetic analysis indicated that Pa. marginatus from Fuzhou and Zhangzhou was clustered in a clade. And that combined with Paracoccus galzerae (inter-species genetic distance is 0.058) to form a clade of the genus Paracoccus. The results of specificity tests showed that all Pa. marginatus specimens could be detected positively and a 446 bp fragment of the 28S rDNA of Pa. marginatus was obtained by the species-specific primers, while there was no cross reactions with other 10 species of mealybugs. The species-specific primers not only had a stable amplification effect on female adults, but also were proved to be applicable for the 2nd instar nymphs and the 3rd instar nymphs. Pa. marginatus from three different regions (Fuzhou and Zhangzhou in Fujian province, Jinghong in Yunnan province) and six different host plants (Carica papaya, Solanum melongena, Plumeria rubra, Solanum tuberosum, Tithonia diversifolia and Duranta erecta) was also successfully detected by the species-specific primers.【Conclusion】Molecular identification of Pa. marginatus first reported in Fujian province was carried out based on 28S rDNA molecular markers. It was proved by experiments that the 28S rDNA species-specific primers had ideal and stable specificity for Pa. marginatus and could be used to identify Pa. marginatus accurately. A rapid molecular detection technique for Pa. marginatus was established based on the species-specific PCR method. The technology has the characteristics of accuracy, rapidity, sensitivity and simplicity. Our present results indicated that the rapid detection technique should be useful in quarantine at ports, in pest detection and in monitoring during transportation of papaya and other fruit tree seedlings, as well as flowers. However, in view of the fact that no other mealybugs of the genus Paracoccus has been reported in China, this study can provide a reference for the molecular identification for the closely related species of Pa. marginatus. © 2019 Journal of Fruit Science 相似文献
6.
Internal transcribed spacer (ITS) sequences of four edible and medicinal fungi belonging to the Russulaceae, collected from the Lishui mountainous area of Zhejiang Province, were cloned and sequenced. Comparisons with sequence data in GenBank were undertaken using BLAST, and the four ITS sequences, together with 15 reference sequences obtained from GenBank, were used to construct a phylogenetic tree. rDNA ITS sequences of the four strains ranged from 673 to 766 bp in length and between 47.4% and 49.48% in GC content. Phylogenetic data indicated strain R57 to be Russula cyanoxantha. Differences in the size and GC content of ITS sequences from strains R32 and R57 (R. cyanoxantha) and strain L37 (Lactarius sanguifluus) were significant, whereas the corresponding differences between strains R32 and R57 were relatively small. A close kinship, with only small detectable differences in their respective ITS sequences, existed between R. mustelina, R. virescens and R. parazurea. A similar situation applied to strains of L. sanguifluus and L. salmonicolor. 相似文献
7.
SHEN Hong CHEN Mingjie ZHAO Yongchang PAN Yingjie Key Laboratory of Agricultural Genetics Breeding of Shanghai 《食用菌学报》2007,(2)
Fourteen Morchella samples (eleven from Yunnan and three from Zhejiang Provinces) were selected on the basis of differences in fruit body morphology. Ribosomal DNA internal transcribed spacers (ITS) were amplified in each case using the universal primer pair, ITS-1 and ITS-4, and the amplification products were purified and sequenced. Comparisons with sequence data in GenBank revealed that the 11 Morchella isolates collected from Yunnan belonged to four species: Morchella elata, Morchella conica, Morchella crassipes and Morchella costata. The three isolates collected from Zhejiang Province (M12, M13 and M14) were designated as unknown Morchella species. When Verpa conica (AJ544206) (from the genus Verpa belonging to the same family as Morchella) was taken as the outgroup, the 14 isolates formed three groups, M. elata, M. costata (Group 1); Morchella esculenta, M. conica (Group 2); and M. crassipes, M12, M13 and M14 (Group 3). 相似文献
8.
PCR amplification employing a SCAR (Sequence Characterized Amplified Region) primer pair, 135F/R,(amplifying a band of 601 bp) for identifying '135' strains of Lentinula dodes was used to establish the distribution of the specific SCAR marker among 58 protoplast monokaryons and 97 spore monokaryons isolated from a L.edodes 135 strain.Protoplast monok.aryons segregated into either A1B1 or A2B2 mating type,and the SCAR marker was detected only in the latter.The marker was also detected in four delineated m... 相似文献
9.
Competitive mycelial growth(CMG)between Pleurotus eryngii isolates is genetically controlled,and stable CMG responses(positive,neutral or negative)were recorded among the strains tested.Correlations between CMG responses and mycelial growth rate were observed.CMG simultaneously reflects information relating to somatic incompatibility and mycelia growth rate in edible mushrooms,and can be readily and reliably applied to studies on genetic polymorphism among this group of fungi. 相似文献
10.
【Objective】The purpose of the research was to study the occurrence and molecular diversity of Actinidia virus A (AcVA), so as to provide scientific basis for the rapid detection, scientific prevention and control of AcVA and the variety breeding of kiwifruit in China.【Methods】Total RNA was extracted from kiwifruit leaves by CTAB (Cetyl Trimethyl Ammonium Bromide). Nested- PCR was used to amplify AcVA CP gene sequence. The first round PCR amplification was performed by using primers AcVA- 1F (5’- ATGAATCGTTCGAGCA TAGGT- 3’) and AcVA- 1R (5’- TGCGAACATGGTCCCACACTTA-3’), and the pair of primers was designed according to the full length of AcVA sequence, and the amplified fragment was 888 bp that included the complete CP gene sequence. The reaction was conducted under conditions of initial 5 min denaturation at 94 ℃, 34 cycles of 94 ℃ for 60 s, 54 ℃ for 60 s, 72 ℃ for 60 s and extension for 10 min at 72 ℃. Then, 1 μL PCR product was used as template for the second round of PCR amplification with the primers AcVA- 2F (5’- ATGGCAAAGAATATCTCAAG-3’) and AcVA-2R (5’-CTATATTTCAACAGCCTGC-3’). PCR was performed using the following parameters: one cycle at 94 ℃ for 5 min, 34 cycles at 94 ℃ for 30 s, 54 ℃ for 30 s, and 72 ℃ for 40 s, and extension for 10 min at 72 ℃. The BLAST algorithm was used to search the NCBI GenBank (http://www.ncbi.nlm.nih.gov/) databases for homologous sequences and ascertain the identity of target gene. DNAMAN was used to analyze the AcVA CP gene sequence, and MegAlign was used to analyze the sequence identity. The phylogenetic tree was constructed using the Neighbor-Joining (NJ) method in MEGA 6.0. The restriction enzymes Bam HⅠ and Sal Ⅰ were added to the corresponding end of the AcVA CP gene sequence, respectively. The PCR purified products and pET28a vector were digested by Bam HⅠ and Sal Ⅰ, after that they were ligated with T4 DNA ligase (TaKaRa) and transferred into E. coli (Escherichia coli) strains DH5á (TaKaRa), and finally plated onto LB (Luria-Bertani) agar containing Kana (Kanamycin). The expression strain BL21 containing the recombinant plasmid was cultured at 37 ℃ overnight, and transferred to a new medium at a 10% inoculum on the second day, until OD600 reached 0.4-0.6, IPTG (Isopropyl β-D-Thiogalactoside) was added to a final concentration of 0.2, 0.4, 0.6, 0.8, 1.0 mM, and incubated at 16 ℃ overnight. The expressed protein was purified and then anti-AcVA-CP antibody was obtained from a rabbit. The optimal titer of the antiserum was tested by Western blot.【Results】The complete CP gene sequences of AcVA Sichuan isolates were cloned by nested-PCR and named as AcVA-DJY4, AcVA-HYZ1 and AcVA-WBS12, respectively. In the study the frequency of AcVA in Sichuan province was also counted. The full length of the CP gene sequence was 597 bp, encoding 198 amino acids. Based on the comparison of the nucleotide sequence and the deduced amino acid sequence of CP gene of the AcVA isolates, the nucleotide identity between the AcVA isolates from Sichuan province ranged from 86.9% to 88.3%, and the identity of the encoded amino acids ranged from 96.0 to 96.5%. The CP genes of three AcVA Sichuan isolates shared 87.9%-90.8% nucleotide identity and 94.9%-97.5% amino acid identity with the Actinidia virus A isolate TP7-93A (AcVA-TP7-93A) from New Zealand and the Actinidia virus A isolate Haenam (AcVA-Haenam) from South Korea. Phylogenetic analysis based on nucleotide sequence of AcVA CP gene showed that AcVA-HYZ1 was clustered with AcVA-Haenam (Group I), and AcVA-WBS12 was clustered with AcVA-TP7-93A (Group II), but AcVA-DJY4 was an independent branch. Phylogenetic analysis based on amino acid sequence of AcVA CP gene showed that AcVA-WBS12 was a single branch, AcVA-DJY4 and AcVA-HYZ1 were clustered into one group (Group I), and the AcVA-Haenam reported in South Korea and the AcVA-TP7-93A reported in New Zealand were clustered into another group (Group II). The results of the phylogenetic analyses indicated that there were significant differences among the AcVA isolates. The prokaryotic expression plasmid pET28a-AcVA-DJY4-CP was successfully constructed. The target fusion protein (27 kDa) was highly expressed in E. coli induced by 0.6 mmol · L- 1 IPTG at 16 ℃. The expressed protein was purified and retrieved and then used to immune rabbits and the corresponding specific antiserum was prepared. Western blot analysis confirmed that the antiserum reacted strongly and specifically with the CP of AcVA-DJY4, with the optimal titer of the antiserum being up to 1:5 000.【Conclusion】Three AcVA Sichuan isolates were obtained for the first time, enriching the sequence diversity of the AcVA CP gene sequences. In the study, the optimal conditions were explored for prokaryotic expression and specific antisera was prepared for detection of AcVA-DJY4-CP. Western blot analysis showed that the antiserum could be used for the detection of AcVA in the kiwifruit producing districts. These results can also provide a technical support for the rapid detection, scientific prevention and control of virus disease in kiwifruit plant and the breeding of kiwifruit varieties. © 2019 Journal of Fruit Science 相似文献
11.
Li-Wang Liu Li-Ping Zhao Yi-Qin Gong Ming-Xia Wang Li-Ming Chen Jin-Lan Yang Yan Wang Fan-Min Yu Long-Zhi Wang 《Scientia Horticulturae》2008
Three molecular marker systems, RAPD (random amplified polymorphic DNA), ISSR (inter-simple sequence repeat) and SRAP (sequence-related amplified polymorphism), were employed for identification and genetic diversity analysis of 35 elite late-bolting radish cultivars. Detected by 35 RAPD primers, 22 ISSR primers and 17 SRAP primer combinations, the proportions of polymorphic bands were 85.44%, 85.2% and 85.41%, respectively, and the mean genetic similarity coefficients between pairs of genotypes were 0.781, 0.787 and 0.764, respectively. Each of the three molecular marker systems can identify all the cultivars. Five sets of three-RAPD primers, 3 sets of three-ISSR primers and 16 sets of three-SRAP primer combinations were able to distinguish all the cultivars. A linear relationship was observed between Resolving power (Rp) of a primer and its ability to distinguish genotypes. The 35 cultivars were clustered into three major groups based on the RAPD, ISSR and marker combination data with UPGMA, which are in high accordance with their own origins and main characteristics. The results demonstrated that these three marker systems could be useful for identification and genetic diversity analysis of radish cultivars. 相似文献
12.
Charu Mitra Sanjogta Uppal Sunita Jain 《The Journal of Horticultural Science and Biotechnology》2013,88(4):398-402
SUMMARYA comparative study was conducted to evaluate genetic diversity in 45 genotypes of date palm (Phoenix dactylifera L.), including both male and female plants, employing RAPD and ISSR marker systems. The data were analysed to calculate the total number of bands, the number of polymorphic bands, the percentage polymorphism, the average number of bands per primer, the effective multiplex ratio (EMR), the polymorphic information content (PIC), the marker index (MI), and genetic similarity coefficients. The 37 RAPD and 53 ISSR primers used generated 363 and 608 scorable amplified products, respectively, of which 95.0% and 90.9% were polymorphic. The ISSR markers produced more information than the RAPD markers due to their higher EMR and MI values. Jaccard similarity values among male plants, female plants, and between all male and all female plants varied between 0.72 – 0.80. The results indicate the effectiveness of these two marker systems for demonstrating genetic relationships among date palm genotypes. 相似文献
13.
香菇菌株遗传多样性ISSR、RAPD和SRAP综合分析 总被引：1，自引：0，他引：1
采用ISSR、RAPD和SRAP分子标记技术对收集到的26株供试香菇(Lentinula edodes)菌株进行遗传多样性分析,将分析数据合并构建UPGMA亲缘关系树状图,综合分析结果表明,26株供试香菇菌株间的遗传相似系数范围为0.49～0.97,在相似系数0.61时可分为3个类群,具有相似遗传背景或来源于野生资源的菌株优先聚类在同一亚群,由5株野生菌株组成的第三类群与21株主栽菌株相似系数仅为0.50,存在非常明显的遗传差异.该试验结果表明:该方法可以更好地解释供试香菇菌株间的亲缘关系;加强野生香菇种质资源的评价和鉴定研究,将有利于我国现有主栽香菇的品种改良和培育出具有自主知识产权的优良香菇新品种. 相似文献
14.
山楂（Crataegus pinnatifida Bge.)遗传多样性的RAPD和ISSR标记分析 总被引：7，自引：0，他引：7
利用RAPD和ISSR标记对35份山楂（Crataegus pinnatifida Bge.）资源进行了DNA多态性分析。12个RAPD引物共扩增出110条清晰的谱带,其中89条显示多态性,平均每个引物扩增出7.4条多态性谱带。13个ISSR引物共扩增出110条清晰的谱带,其中94条显示多态性,平均每个引物扩增出7.2条多态性谱带。基于RAPD和ISSR标记,利用UPGMA分别构建了35份山楂资源的聚类树状图。距离系数分别为0～0.62（RAPD）和0～0.64（ISSR）,表明山楂具有较高的遗传多样性。 相似文献
15.
Diversity and genetic relationship in 100 cashew germplasm accessions were analyzed by using RAPD and ISSR markers. Using 10 selected RAPD primers 60 bands were generated, of which 51 bands were polymorphic (85%), and with 10 selected ISSR primers 67 amplified bands were observed with 58 polymorphic bands (86.6%). Though both kinds of markers discriminated the accessions effectively, analysis of combined data of markers (RAPD + ISSR) resulted in better distinction of accessions. By combining markers, a total of 127 bands were detected, of which 109 bands (85.8%) were polymorphic and produced on an average of 5.45 polymorphic bands per primer. Primers with high polymorphic information content and marker index were identified for discriminating accessions. High percentage of polymorphism (>85%) observed with different markers indicated high level of genetic variation existing among the accessions. Genetic relationship estimated using similarity co-efficient (Jaccard’s) values between different pair of accessions varied from 0.43 to 0.94 in RAPD, 0.38 to 0.89 in ISSR and 0.43 to 0.87 with combined markers suggested a diversity (dissimilarity) ranging from 6 to 57%, 11 to 62% and 13 to 57% respectively and the diversity skewed around 50% indicated moderate diversity. The cluster analysis with UPGMA method separated the accessions broadly into 13 clusters and in that three into smaller clusters. Some correspondence between the molecular groupings and the morphological clusters were observed. Among the accessions, NRC-142 and NRC-12 were highly divergent and NRC-231 and NRC-232 were genetically similar. 相似文献
16.
Veerendra K. Verma T.K. Behera A.D. Munshi Swarup K. Parida T. Mohapatra 《Scientia Horticulturae》2007
Ten inbred lines of ash gourd [Benincasa hispida (Thunb.) Cogn.] were crossed to produce 45 F1 hybrids (without reciprocal) which were evaluated along with the parents for 20 growth- and yield-related traits, in a replicated field trial. High level of heterosis was observed among the hybrids for most of the traits examined, including yield. These inbred lines were analysed by using 42 RAPD primers those produced 282 DNA marker bands. A total of 130 RAPD markers were obtained with a mean of 3.1 per primer, which in combination discriminated all the inbreds from each other. Pair-wise genetic distance measurements ranged from 0.07 to 0.31, suggesting a wide genetic diversity for these inbreds. These inberds were also analysed with five ISSR primers of which four were informative. Twenty-six ISSR marker bands were generated of which 11 were polymorphic with an average of 2.80 per primers. The percentage of polymorphic bands produced were higher in ISSR markers (>80%) than generated through RAPD markers (46%). Although the results indicated significant positive correlations of genetic distance with hybrid performance and heterosis, the RAPD based genetic distance measures and use of limited ISSR markers in this present study could not effectively predict hybrid performance in this crop. The genetic variation among ash gourd inbred lines examined, herein, defined a marker array (combined ISSR and RAPD) for the development of a standard reference for further genetic analyses, and the selection of potential parents for predicting hybrid performance and heterosis. 相似文献
17.
The genetic relationships among 63 melon (Cucumis melo L.) genotypes collected from various regions of Turkey were determined by comparing their molecular ISSR, SRAP, and RAPD markers with those of 19 foreign melon genotypes to investigate the taxonomic relationships and genetic variation of Turkish melon germplasm. Total 162 polymorphic markers (69, 18, and 75 obtained from ISSR, SRAP, and RAPD primers, respectively) were used to define the genetic similarity among the melon genotypes by dendrogram or two and three dimensional scalings. The average similarity (SM coefficient) between any two pairs of accessions examined as estimated by molecular variation was 0.73 ± 0.48. Within-group genetic similarities ranged between 0.46 and 0.96. Related genotypes or genotypes collected from similar regions were partitioned to similar clusters. Southeastern Anatolian genotypes were distinctly apart from group inodorus and group cantalupensis (sweet) genotypes. This reinforced the position of Turkey in the secondary genetic diversity center of melon. The genetic diversity among Turkish genotypes (H = 0.28 and I = 0.42) was only a little less than that of the world accessions (H = 0.30 and I = 0.45). On the other hand, the percentage of polymorphic loci among Turkish melon genotypes (90.7%) was even higher than that of the world accessions (87.6%). 相似文献
18.
The application and informativeness of RAPD, ISSR, IRAP and REMAP markers to study the genetic diversity and relationship among the Citrus and its relative genotypes were investigated. High levels of polymorphism were observed for all four marker systems. The RAPD technique generated the highest number of polymorphic bands and average number of polymorphic band per assay unit. Average limit of the discriminating power was very close to its actual discriminating power of each marker. The highest and the lowest values of effective number of patterns were obtained from the marker REMAP (5.94) and RAPD (4.48), respectively. Correlation between the genetic similarities matrices were estimated from all four markers using the Mantel matrix correspondence test, and results showed significant correlations among the RAPD, ISSR, IRAP and REMAP similarity matrices. The highest correlations were found comparing RAPD and ISSR markers, whereas RAPD and REMAP (r = 0.143) markers were poorly correlated. To assess the usefulness of the overall information provided by these marker data for establishing phylogenetic relationships and Citrus germplasm classification, cluster analysis was performed. All four techniques, solely or in combination, discriminated the genotypes very efficiently and generated a high similarity in dendrogram topologies, although some differences were observed. The linkage analysis was conducted based on the segregation of 38 RAPD, 13 ISSR, 19 IRAP and 9 REMAP loci in 96 progeny of an intergeneric cross Citrus sinensis and Poncirus trifoliata. Among the 81 studied loci 65 loci distributed on five linkage groups. Comparing the result obtained with RAPD, ISSR, IRAP and REMAP markers in this study, IRAP and REMAP proved to be as a reliable molecular marker for fingerprinting, mapping and diversity study of Citrus and its relatives. 相似文献
19.
Ozgun Kalkışım Melih Okcu Zuhal Okcu Besim Karabulut Nalan Yildirim Guleray Agar 《Erwerbs-Obstbau》2016,58(4):259-264
Thirty one pears genotypes from east blacksea region were evaluated for genetic relationships by using Randomly Amplified Polymorphic DNA (RAPD) and ISSR (Inter-Simple Sequence Repeats) markers from total 70 RAPD and ISSR primer investigated, 22 could amplify clearly and consistently. Cluster analysis of the pears genotypes was performed based on data from polymorphic bands RAPD and ISSR by using Jaccard’s similarity coefficient and the Unweighted pair-group method with arithmetic average (UPGMA) clustering method. The 31 pear genotypes were classified into two major groups. Cluster A was divided into 2 subclusters: Gumushane pears and Trabzon pears. Cluster B consisted of Artvin pears. The similarity matrix values ranged between 0.105 and 0.968. 相似文献
20.
A genetic analysis of 38 diverse Indian bitter gourd (Momordicacharantia var. charantia, and var. muricata) accessions was performed using 29 RAPD and 15 ISSR markers. RAPD primers yielded 208 amplicons of which 76 (36.5%) were polymorphic providing an average of 2.6 amplicons per primer. RAPD amplicons per primer ranged from 3 (OPE-19, OPW-09) to 15 (OPW-05), and varied in size from 200 bp to 3000 bp. Fifteen ISSR primers provided a total of 125 bands of which 94 (74.7%) were polymorphic. Polymorphic ISSR markers ranged from 0 (UBC-841) to 12 (UBC-890) providing a mean of 6.3 amplicons per primer that ranged in size from 150 bp to 2700 bp. Nevertheless, the concordance among bitter gourd accession groupings after cluster analysis was relatively high (r = 0.77), indicating that RAPD- and ISSR-based diversity assessments in this germplasm array were generally consistent. The M.charantia var. charantia (domesticated) and var. muricata (wild, free-living) accessions examined were genetically distinct, and these differences provided for the development of strategies for genetic analyses and crop improvement in this species. 相似文献