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1.
狂犬病毒(RV)糖蛋白(G)、尾随序列、聚合酶、G-L间隔区决定了其神经侵袭力,并且G基因、G-L间隔区携带病毒遗传差异性及流行病学信息.为研究云南省RV的分子差异和进化关系、探索同一毒株不同基因片段是否发生重组,本研究选择云南省2006年～2011年来自不同地州的18份RV阳性样品,对G基因、G-L间隔区进行克隆、测序,并与参考序列进行比对及系统发育分析.实验表明云南RV血清Ⅰ型和基因Ⅰ型病毒株存在2个遗传谱系(China-Ⅰ和Thailand),其中China-Ⅰ可进一步划分为3个遗传亚谱系(China Ⅰ-1～China Ⅰ-3).3个病毒样品(YNYL2010、YNQJ07、YNRL022011)G基因、G-L间隔区分析结果存在差异,在G基因系统发育分析中,YNYL2010、YNQJ07、YNRL022011分别属于遗传亚谱系China Ⅰ-1、China Ⅰ-2、Thailand,而在G-L间隔区分析中,则分别位于China Ⅰ-2、China Ⅰ-3、China Ⅰ-1.结果表明云南省RV G基因和G-L间隔区基因序列具有遗传差异,相同遗传(亚)谱系的病毒株间可能存在不同的来源.  相似文献   

2.
猪瘟野毒不同代次E2基因主要抗原编码区序列差异分析   总被引：1，自引：0，他引：1  
利用RT－PCR及序列测定对5株猪瘟野毒14个不同代次毒株E2基因主要抗原编码区序列进行了分析。结果表明每个野毒的不同代次毒株核苷酸及氨基酸序列均呈现较高的保守性，核苷酸及氨基酸序列均无变化，核苷及氨基酸同源性均为100%。与02号野毒相比，其他4株野毒核苷酸及氨基酸同源性分别为82.0%-99.5%、84.1%-98.6%。遗传衍化分析结果表明所有毒株被分成2个基因组，每个基因组又分成2个基因亚组。03、05和22号毒株位于第一基因组，02、06号毒株位于第二基因组。每一个毒株的不同代次毒株均位于同一基因组、同一基因亚组。证实了猪瘟病毒分子结构的遗传稳定性。  相似文献   

3.
为鉴别我国山羊痘病毒（GTPV）弱毒疫苗AV41株与牛结节性皮肤病病毒（LSDV）野毒株，运用生物信息学方法将AV41株基因组全序列与GenBank中已发表的LSDV、GTPV和绵羊痘病毒（SPPV）基因组进行比较，筛选AV41株基因组分子标记。采用我国不同厂家来源的AV41株疫苗测序验证分子标记相关序列，并与我国LSDV野毒株相应位置序列比较。结果显示，通过基因组比较分析共筛选获得分子标记19 个，经测序确认其中7 个为AV41株基因组独特分子标记，包括DNA ligase基因2433A2434、Kelch-like protein基因1831A1832、GTPV_gp020基因G203A、GTPV_gp021基因C681T、DNA-binding viron core protein基因C47T、RNA polymerase subunit 基因T64C和Myristylated protein基因C746A，而我国LSDV野毒株相应位置序列未见上述变化。本研究揭示了AV41株基因组独特分子标记分布情况，可用于我国牛结节性皮肤病疫情防控中与LSDV野毒株的分子鉴别。  相似文献   

4.
对水貂犬瘟热CDV3疫苗株基因组进行全序列测定与分析,以阐明该疫苗株的来源亲本毒株,基因特征及H基因遗传稳定性。将CDV3疫苗株基因组cDNA分9个重叠片段进行RT-PCR并克隆入pMD 18-T载体中,测定全长cDNA序列。并与CDV野毒参考株和疫苗株N、F和H基因氨基酸序列比对分析其基因变异情况。通过对CDV3疫苗株6个不同生产批次(Vero细胞培养代次)H基因序列测定以分析毒株的分子遗传稳定性。基因序列分析结果表明:CDV3疫苗株基因组全长15 690 bp,与CDV野毒株基因组同源性较低(93.0%~95.3%)。H基因核苷酸和氨基酸序列与Lederle疫苗株(EF418783)同源性最高,分别为99.6%和98.7%。而6个不同培养代次CDV3疫苗株H基因氨基酸序列无任何差异。由此证实CDV3疫苗株的亲本毒株与Lederle疫苗株有着最密切关系,不同培养代次的CDV3疫苗株H基因具有较高的遗传稳定性。  相似文献   

5.
为阐明狂犬病病毒（RV）不同毒力株感染鼠脑后基因表达的差异,进一步揭示RV感染和机体抗感染应答的分子机制。本试验应用差异显示技术分析了正常鼠脑悬液、狂犬病病毒SRV9弱毒株及BD06街毒株感染鼠脑48h的基因水平变化。结果显示,与对照组相比,SRV9与BD06组有4对共同上调表达差异片段;与其它两组比较,SRV9组有2个基因上调表达,BD06组存在1个上调表达基因。这些差异基因体现了宿主细胞对RV感染的应答模式以及不同毒株感染间的差异,为深入研究RV致病机理奠定了基础。  相似文献   

6.
根据GenBank中已发表的狂犬病病毒G基因序列,设计合成了1对特异性引物,对RV ERA株G基因进行了RT-PCR扩增。将PCR产物纯化后与pMD18-T连接得到重组质粒pMD-G,并进行核苷酸序列测定。结果该基因全长1 575bp,编码524个氨基酸。与GenBank中已发表的其他RV标准毒株(CVS,PV,SRV9,SAD-B19)相比,G基因核苷酸的同源性为89.1%～99.1%,推导的氨基酸序列的同源性为89.7%～99.3%。对推导的RV ERA株G蛋白氨基酸序列分析表明,该蛋白含有3个潜在的N-联糖基化位点。用DNAStar软件对RV ERA株与CVS、SRV9、PV、SAD-B19等G蛋白疏水性、Jame-son-Wolf抗原表位和表面极性分析表明,它们之间非常相似。  相似文献   

7.
试验旨在比较分析羊口疮病毒（orf virus,ORFV）VIL-10基因在疫苗株和野毒株之间的差异特征。参照GenBank中公布的ORFV NZ2株的VIL-10基因序列设计并合成1对特异性引物,分别以疫苗株和野毒株提取的基因组DNA为模板,采用PCR方法扩增ORFV的VIL-10基因全序列并进行测序,应用生物信息学相关软件分析基因的核苷酸、氨基酸变异情况及蛋白结构。结果显示,本试验测定的疫苗株和野毒株VIL-10基因核苷酸序列同源性为94.4%,差异主要是单个碱基的突变,其中疫苗株在132~134 bp核苷酸序列出现缺失;氨基酸序列同源性为92.5%,出现了15个氨基酸位点的突变,其中疫苗株第42位氨基酸天冬酰胺出现缺失;蛋白质在一级结构及理化性质、二级结构、三级结构、抗原表位参数及有无信号肽之间均存在一定程度的差异,而疫苗株和野毒株编码的蛋白质均无跨膜结构域。系统进化树分析结果表明,本试验测定的野毒株与疫苗株属于不同分支,遗传关系较远。研究结果提示,野毒株与疫苗株的VIL-10基因发生较明显的变异,这些变异可能与ORFV疫苗株的毒力致弱有关。  相似文献   

8.
羊口疮病毒疫苗株与野毒株VIL-10基因的比较分析   总被引：1，自引：0，他引：1  
试验旨在比较分析羊口疮病毒(orf virus,ORFV)VIL-10基因在疫苗株和野毒株之间的差异特征。参照GenBank中公布的ORFV NZ2株的VIL-10基因序列设计并合成1对特异性引物,分别以疫苗株和野毒株提取的基因组DNA为模板,采用PCR方法扩增ORFV的VIL-10基因全序列并进行测序,应用生物信息学相关软件分析基因的核苷酸、氨基酸变异情况及蛋白结构。结果显示,本试验测定的疫苗株和野毒株VIL-10基因核苷酸序列同源性为94.4%,差异主要是单个碱基的突变,其中疫苗株在132~134bp核苷酸序列出现缺失;氨基酸序列同源性为92.5%,出现了15个氨基酸位点的突变,其中疫苗株第42位氨基酸天冬酰胺出现缺失;蛋白质在一级结构及理化性质、二级结构、三级结构、抗原表位参数及有无信号肽之间均存在一定程度的差异,而疫苗株和野毒株编码的蛋白质均无跨膜结构域。系统进化树分析结果表明,本试验测定的野毒株与疫苗株属于不同分支,遗传关系较远。研究结果提示,野毒株与疫苗株的VIL-10基因发生较明显的变异,这些变异可能与ORFV疫苗株的毒力致弱有关。  相似文献   

9.
首次对犬冠状病毒(CCV)V1株和DXMV株小膜蛋白(SM)基因进行了克隆和序列测定.用RT-PCR对分离的CCV V1和DXMV野毒株SM基因进行了扩增,并将其克隆到pMD18-T中进行核苷酸序列测定.结果两毒株SM基因ORF全长均为246bp,编码82个氨基酸;与GenBank中CCV标准毒株Insavc-1 SM基因相比,核苷酸和推导的氨基酸序列同源性分别为100%、92.1%和100%、90.9%.DXMV株与Insavc-1株SM基因相比有9个碱基发生了改变,导致4个氨基酸发生变化.对冠状病毒科中不同的冠状病毒SM基因及其推导的氨基酸序列聚类分析表明,冠状病毒可分为4个群,群内不同冠状病毒SM基因及其蛋白显示出很高的同源性,而不同群之间的同源性却较低.  相似文献   

10.
本文通过反转录—聚合酶链反应 (RT- PCR)扩增并克隆了我国狂犬病病毒 (RV)鹿源野毒株 (82 0 2 )糖蛋白 (G)基因膜外主要功能区的两个片段 ,共 742个 bp(40 5～ 1 1 46) ,含有可以诱导中和抗体的多个抗原决定簇和决定毒力及与神经细胞受体结合部位的基因片段。采用 Sanger双脱氧终止法测定了克隆 c DNA片段的核苷酸序列并推导出了氨基酸序列。将82 0 2株与已发表的人疫苗株 (3a G)的相应序列输入计算机进行比较分析。结果表明两者在这一基因片段核苷酸序列和氨基酸序列分子差异很小 ,同源性极高 ,分别为 97%和 95.5% ,抗原决定簇内的氨基酸均未发生改变 ,只是 82 0 2株在 N2 4 7位缺少一糖基化位点。结合流行病学调查可推断 82 0 2株与中国疫苗株属于同源毒株 ,本研究结果提示应用人狂犬病疫苗预防鹿狂犬病将具有很好效果。  相似文献   

11.
In Latin America, rabies cases related to frugivorous bats have been reported since 1930's. Recently, two viruses isolated from Artibeus lituratus were proved to be vampire bat variants by monoclonal antibodies panels [2], but their genetic information is not well known. In this report, four rabies viruses were isolated from frugivorous bats (Artibeus spp.) in Brazil and their nucleoprotein gene sequences were determined. These isolates were found to be genotype 1 of lyssavirus and showed the maximum nucleotide sequence homology of 97.6-99.4% with vampire bat-related viruses in Brazil [6]. These results indicate that the Brazilian frugivorous bat rabies viruses in this study are closely related to vampire bat-related viruses that play a main role in rabies virus transmission to livestock in Brazil.  相似文献   

12.
三株广西狂犬病病毒NS基因和M基因的克隆与序列分析   总被引：1，自引：0，他引：1  
本研究设计了一对特异性引物NSM1/NSM2,对三株广西狂犬病病毒NS和M基因同时进行了RT_PCR扩增、克隆和测序。同源性分析表明,三株广西野毒NS基因核苷酸同源性为87.2%~98.4%,M基因核苷酸同源性为90.1%~99.7%;与固定毒和狂犬病相关病毒比较,NS基因分别为79.9%~82.8%和69.7%~71.0%;M基因的分别为82.8%~87.8%和75.0%~77.8%。三株野毒NS基因氨基酸同源性为93.3%~98.7%,M基因氨基酸同源性分别为97.5%~100%。表明广西各地毒株之间亲缘关系不同,但最为相近;与狂犬病固定毒株亲缘关系较远;与狂犬病相关病毒亲缘关系最远。  相似文献   

13.
通过RT-PCR分别获得了狂犬病病毒强毒CVS株、DRV82株糖蛋白基因,进行克隆及测序,并推导出氨基酸序列,与犬用疫苗弱毒株ERA、SRV9、犬源性街毒株CGX及人用疫苗株PG的糖蛋白序列进行比较。结果表明,以上狂犬病病毒毒株间的核苷酸同源性为83.1%～99.2%,氨基酸序列同源性为87.0%～98.5%。经Jameson-Wolf抗原表位优势图分析,CVS株与其他各株相比发现在304位、372位抗原表位优势升高;而DRV82株与其它各株差异不明显。抗原优势变化可能导致狂犬病病毒糖蛋白出现新的潜在抗原位点,为下一步构建不同毒株的狂犬病病毒糖蛋白重组疫苗奠定了基础。  相似文献   

14.
The nucleoprotein (N) and glycoprotein (G) of 11 Korean rabies virus (RABV) isolates collected from animals diagnosed with rabies between 2008 and 2009 were subjected to molecular and phylogenetic analyses. Six isolates originated from domestic animals (cattle and dogs) and five were obtained from wild free-ranging raccoon dogs. The similarities in the nucleotide sequences of the N gene among all Korean isolates ranged from 98.1 to 99.8%, while those of the G gene ranged from 97.9 to 99.3%. Based on the nucleotide analysis of the N and G genes, the Korean RABV isolates were confirmed as genotype I of Lyssavirus and classified into four distinct subgroups with high similarity. Phylogenetic analysis showed that the Korean isolates were most closely related to the non-Korean NeiMeng1025B and 857r strains, which were isolated from rabid raccoon dogs in Eastern China and Russia, respectively. These findings suggest that the Korean RABV isolates originated from a rabid raccoon dog in Northeastern Asia. Genetic analysis of the Korean RABV isolates revealed no substitutions at several antigenic sites, indicating that the isolates circulating in Korea may be pathogenic in several hosts.  相似文献   

15.
以2006～2012年本实验室狂犬病病毒分离株核蛋白基因完整核苷酸序列和GenBank收录的主要数据为基础,通过构建系统发生树和比对病毒分离株相互间的同源性,对中国狂犬病流行特征进行分析.结果显示,目前涉及中国17个狂犬病主要流行省区的62个狂犬病病毒代表流行株,均为基因Ⅰ型,但在系统发生树上可分为i、ii、iii、iv、v共5个基因群,群内同源性91.4％～99.9％,群间同源性84.5％～90.1％.其中,i、ii群占国内新分离株的绝大多数,为2个主要流行基因群.i群遍布各主要流行省区,主要为来源于犬的分离株.ii群主要分布于南方省区,迄今分离到的多个鼬獾狂犬病病毒株在系统发生上也属于ii群.iii群仅见于广西壮族自治区、云南省两地,与东南亚国家狂犬病分离株同源性高达97.7％.iv群的地区分布不规律,在中国东北、中原、东南和西部地区均有零星报道,分离株较少.v群近年来仅偶见于内蒙东北部及黑龙江省与俄接壤地区,与俄罗斯远东及韩国流行株同源性高达98.5％.综上,中国狂犬病流行以犬间传播为主,野生动物狂犬病的流行日益严重,东北和西南地区存在境外狂犬病传入.犬等动物种群免疫覆盖率低应是狂犬病持续传播的主因.  相似文献   

16.
The incidence of canine rabies has been widely reported in Brazil, and new rabies virus (RV) variants, genetically similar to canine RV, have recently been isolated from foxes. In order to derive the epidemiological characteristics of Brazilian Carnivora RV, Brazilian RVs isolated from dogs, cats, and foxes were genetically analyzed. Brazilian Carnivora RV isolates were divided into 2 main lineages. The predominant lineage was found in dogs and cats, which included the Argentinean and Bolivian Carnivora RV isolates, and was extensively distributed throughout Brazil and surrounding countries. The other lineage consisted of three sublineages containing Brazilian dog and fox RV isolates, with the dog sublineages located on an internal branch of 2 fox sublineages, suggesting that RV transmission events might have occurred between foxes and dogs in the past. These results suggest that contact between dogs and wildlife has the potential to generate new rabies variants and that it is important to control RV infection cycles in both dogs and wildlife to prevent spread of rabies infection.  相似文献   

17.
Genetic and phylogenetic analyses of the region containing the glycoprotein (G) gene, which is related to pathogenicity and antigenicity, and the G-L intergenic region were carried out in 14 Brazilian rabies virus isolates. The isolates were classified as dog-related rabies virus (DRRV) or vampire bat-related rabies virus (VRRV), by nucleoprotein (N) analysis. The nucleotide and amino acid (AA) homologies of the area containing the G protein gene and G-L intergenic region were generally lower than those of the ectodomain. In both regions, nucleotide and deduced AA homologies were lower among VRRVs than among DRRVs. There were AA differences between DRRV and VRRV at 3 antigenic sites and epitopes (IIa, WB+ and III), suggesting that DRRV and VRRV can be distinguished by differences of antigenicity. In a comparison of phylogenetic trees between the ectodomain and the area containing the G protein gene and G-L intergenic region, the branching patterns of the chiropteran and carnivoran rabies virus groups differed, whereas there were clear similarities in patterns within the DRRV and VRRV groups. Additionally, the VRRV isolates were more closely related to chiropteran strains isolated from Latin America than to Brazilian DRRV. These results indicate that Brazilian rabies virus isolates can be classified as DRRV or VRRV by analysis of the G gene and the G-L intergenic region, as well as by N gene analysis.  相似文献   

18.
We analyzed the nucleotide sequences of the G-L (glycoprotein-large protein) intergenic non-coding region of 33 strains of the rabies virus (RABV) isolated in South Korea in 1998-2010 and compared the sequences with those of previously reported non-Korean strains. The similarities of the nucleotide sequences of the G-L region among all Korean RABV isolates ranged from 97.1 to 100%. Based on the phylogenetic analysis of the G-L region, the Korean RABV isolates were classified into three distinct subgroups with high similarity and were most closely related to the non-Korean NeiMeng1025C isolate, which was isolated from a rabid raccoon dog in eastern China, suggesting that the Korean RABV isolates originate from a rabid raccoon dog in northeastern Asia. Our results indicated that G-L region, as a useful phylogenetic indicator, is equivalent to the nucleoprotein (N) or glycoprotein (G) gene for study of RABV molecular epidemiology and that the Korean RABV isolates showing a few substitutions in the G-L region are continuously circulating in South Korea.  相似文献   

19.
The field distribution of the oral rabies vaccine is effective in controlling the spread of rabies. The present study aimed to investigate efficient distribution locations based on the environment, contact rate, and consumption by target wildlife species in South Korea. The target species (Korean raccoon dogs, domestic dogs, and feral cats) accounted for 945 contacts (52.2%), in total 1,808 contacts. There were 863 (47.8%) contacts by non-target species. Raccoon dogs, a main reservoir of rabies in South Korea, had the highest contact rate (34.1%) among all species. The contact rate by target species was highest at riparian sites and bushy mountainous vegetation, where raccoon dogs are abundant. There was remarkable contact by raccoon dogs in mountainous areas below 150 m with bushy vegetation. Our results indicate that these locations are efficient areas for vaccine distribution, especially targeting the raccoon dog. Vaccines were continuously contacted with intervals ranging from one hour to one day. Vaccines at 94.4% of the distribution points were completely consumed within two weeks. The mean consumption rate was 95.2 ± 1.93% during the overall study period. These findings suggest that the oral rabies vaccine attracts wildlife including domestic dogs and feral cats. Our results suggest that low sections of mountainous areas with bushy vegetation and/or neighboring riparian areas are rich in target wildlife species (especially raccoon dogs) and are efficient locations for vaccine distribution to control rabies in South Korea.  相似文献   

20.
Sylvatic rabies has been present in Croatia for more than three decades, with the red fox (Vulpes vulpes) as the main reservoir. The present epidemic of sylvatic rabies in Croatia started already in 1977 and in the past ten years the disease has become enzootic in the entire country and thus represents a considerable veterinary and public health threat. A genetic characterization and phylogenetic analysis of rabies virus isolates (RABV) from Croatia was performed using panel of 32 selected rabies-positive brain samples from domestic and wild animals collected between 2008 and 2010. Based on the comparison of 367-nucleotide sequences of a conserved region of the nucleoprotein (N) gene (nucleotides 75-441), the phylogenetic analysis revealed a low genetic diversity of currently circulating RABV strains in Croatia. 18 RABV isolates mainly originating from Eastern Croatia clustered with the formerly established Eastern European (EE) lineage, and the rest (14) were identical with the West European (WE) group. Both phylogenetic groups seem to coincide in central regions on both sides along the Save River. A high sequence identity in the N gene of the RABV isolates from neighbouring countries was found.  相似文献   

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