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1.
对9株鸡杆菌进行了血清分型,并应用8条随机引物对该9株鸡杆菌和3个参考菌株(1株巴氏杆菌、1株大肠杆菌和1株链球菌)共12株细菌做随机扩增多态性DNA(RAPD)分型研究。结果显示,9株鸡杆菌分别属于血清Ⅰ型(1/9)、血清Ⅱ型(3/9)和血清Ⅳ型(5/9)。所用8条随机引物中有3条呈现良好的多态性和稳定性,可产生差异显著的指纹图谱。采用SPSS13.0软件分析了不同菌株间的遗传距离,并依此绘制出菌株间的亲缘关系树状图。12株细菌共分为4个聚类群,其中9株鸡杆菌位于同一聚类群中,且又可分为4个聚类亚群。3个参考菌株各自形成一个独立的聚类群。不同血清型的鸡杆菌菌株具有相似的指纹图,同一血清型的菌株指纹图存在差异。结果表明,RAPD基因分型是目前鸡杆菌分子流行病学调查及病原分离鉴定比较理想的方法之一。  相似文献   

2.
为了解大雁、斑头雁及天鹅源沙门氏菌流行特征和脉冲场凝胶电泳（PFGE）分型,本研究对33株沙门氏菌进行血清型鉴定,采用PFGE对其进行基因分型,并用BioNumerics 6.6软件进行聚类分析。鉴定出丙型副伤寒沙门氏菌6株、汤卜逊沙门氏菌19株、乙型副伤寒沙门氏菌1株、伊鲁木沙门氏菌1株、奥斯陆沙门氏菌1株、5株未定型。PFGE聚类分型共分为16个型别,其相似度为53.7%~100.0%,且大多数菌株与人源菌株相似度超过80%。结果表明,大雁、斑头雁及天鹅源沙门氏菌相同血清型PFGE带型高度相似,可能来自同一克隆株,不同血清型PFGE带型差别较大。  相似文献   

3.
从石河子及附近地区规模化牛场死于肺炎的犊牛肺脏中共分离8株多杀性巴氏杆菌(Pasteurella multocida,Pm),为了确定分离菌株的血清型和基因型,分别进行了多重荚膜特异基因PCR检测、脂多糖多重PCR(LPS-m PCR)分型和多位点序列分型(MLST)鉴定和分析。结果显示8株分离菌中,7株为荚膜A型,1株为荚膜B型;LPS-m PCR结果显示其中7株菌为L2,1株为L3基因型;MLST技术将8株细菌中的7株分为ST1型,1株分为ST44型,且两者亲缘关系较近。结果表明8株Pm以荚膜血清A型为主,根据LPS基因特异性将其分为2个基因型,基于管家基因的MLST将8株Pm分为两种ST型。  相似文献   

4.
为了解人源、牛源及兔源无乳链球菌(S.agalactiae)的基因型差异及分子分型的总体结构特征,本实验对30株2012年~2015年分离于人、牛及兔的S.agalactiae在cfb基因鉴定的基础上,通过荚膜多糖分子血清分型(CPS)、多位点序列分型(MLST)和脉冲场凝胶电泳(PFGE)进行基因型的确定和分子特征差异性比较。CPS结果显示,牛源和兔源S.agalactiae均为Ia血清型,而人源无乳链球菌包括Ia和III型两种血清型,以Ia血清型为主要血清类型;MLST分型获得8个STs序列型(ST7、ST10、ST19、ST61、ST103、ST199、ST486、ST651)和6个克隆群(CC7、CC10、CC19、CC23、CC61、CC103),其中人源S.agalactiae拥有最多的STs和克隆群分型;PFGE聚类分析可以将其分为18个PFGE带型,且不同动物源性S.agalactiae之间基因分型差异性较大。血清分型、STs序列型、PFGE带型与宿主的来源之间无明显的相关性。不同来源菌株可以同属于血清型Ia,且所有Ia血清型菌株可以分布于不同的STs序列型和PFGE带型中。但分型为Ia/ST651的人源S.agalactiae在MLST的克隆分群中是分型为Ia/ST103牛源S.agalactiae的克隆衍生物,同属克隆群CC103,Ia/ST651只是Ia/ST103单一位点变化的产物,从分子水平的相似性推测二者存在交叉感染的可能性。本研究为奶牛乳房炎的有效预防和治疗提供依据。  相似文献   

5.
为了解我国鸡源致病性大肠杆菌的分子流行病学状况,利用PFGE分子分型方法,对2017年分离自山东、吉林、新疆、西藏等7个代表性区域的130株大肠杆菌分离株进行了分子分型研究。结果显示:130株大肠杆菌共分为105个带型,其中33株菌株的图谱相似度在90%以上;不同来源菌株的PFGE带型差别较明显,即使是相同来源菌株,PFGE带型差异同样显著,显示了分离株菌株的遗传多样性。本研究为指导我国鸡群大肠杆菌病防控以及鸡源致病性大肠杆菌引发疾病或食品安全突发事件的追踪溯源提供了依据。  相似文献   

6.
选取来自山东等10省698株鸡源大肠杆菌为研究对象,分别利用PCR、微量肉汤稀释法、MLST技术方法进行系统进化群分群、耐药表型检测、分子分型,并采用Bio Numerics v4.0软件和SPSS20.0软件进行数据处理分析。结果显示,低致病群B_1群为48.85%(341/698)和非致病群A群24.64%(172/698)分布较多,高致病群D群20.20%(141/698)和B_2群为6.31%(44/698)。鸡源大肠杆菌耐药严重,12种药物的耐药率约在50%以上。B_2和D群菌株对8种抗菌药的耐药率高于A和B_1群菌株,其中对庆大霉素、大观霉素、头孢噻呋、氨苄西林和奥格门丁5种药物极显著性差异(P<0.01),对氟苯尼考和复方新诺明显著性差异(P<0.05)。135株高致病菌株经MLST分型得到48个ST型,ST117(12株)和ST354(12株)最多,其次是ST115(8株),ST2309(8株),ST10型(7株),ST69(6株),ST1011(5株),ST1158(5株)。有29个ST型各1株,18株菌株未分出序列型。不同地区大肠杆菌ST型分布存在差异,ST69和ST354型分布最为广泛(4个省),其次是ST115、ST117和ST2309型(3个省),ST10、ST48、ST57、ST362、ST371、ST1011和ST1158(2个省),其余36个ST型菌株仅在1个省市有检出。135株菌株分为35个聚类簇,其中23个聚类簇的遗传相似性在40%以下,但有6个聚类簇菌株间的遗传相似性均在80%以上。48个ST型菌株共获得了76种耐药谱。我国各地健康鸡群隐性携带相对较高比例的高致病菌株,且耐药程度相对严重,耐药谱较广。鸡源大肠杆菌菌株分布具有多态性和地域性,ST型与耐药谱之间无相关性。  相似文献   

7.
嗜水气单胞菌分离株ERIC-PCR及RAPD分型比较   总被引：1，自引：0，他引：1  
采用ERIC-PCR和RAPD 2种方法对嗜水气单胞菌2009年分离菌株及实验室保存菌株共83株进行分子分型。参考相关文献设计并合成引物,分别进行PCR扩增及琼脂糖凝胶电泳,电泳结果经Quantity One软件数值化后利用SPSS软件进行聚类分析。结果显示,除少数分离株外,使用2种方法对大多数菌株分型,均能得到多态性较好的指纹图谱。RAPD的AP12H引物能扩增出1～12个200～4 500bp之间的条带,可将嗜水气单胞菌分离株分为4群、12类。ERIC-PCR能扩增出4～16个100～5 800bp之间的条带,将嗜水气单胞菌分离株分为4群、17类,同一年代、同一地域分离株分别有聚成一类的趋势。2种分型方法均体现很好的分型能力。但ERIC-PCR分型与RAPD分型相比,重复性和稳定性更好,分辨力更高,且具备RAPD不要求模板序列已知而直接进行扩增的优点,更适合嗜水气单胞菌的分型研究。  相似文献   

8.
为了明确目前广东省水禽源沙门菌的优势血清型及其分子流行病学动态,采用细菌分离纯化、生化特性鉴定和PCR扩增从316份样品中分离鉴定出188株水禽源沙门菌;采用玻片凝集法将分离株分为4(B、D、C1、E1)个群别8种血清型;采用脉冲场凝胶电泳(PFGE)分型法对分离株进行分子分型,得到PFGE-XbaⅠ带型62种,菌株间相似度为54.1%~100.0%,分为A^I共9个聚类簇与11个单一基因型。结果表明,广东水禽源沙门菌优势血清型为鼠伤寒沙门菌,PFGE-XbaⅠ带型具多样化,其中11种PFGE-XbaⅠ带型在区域和年份小范围集中流行,32种带型跨区域与跨时间交叉分布呈散在"流行暴发",不同血清型分离株的PFGE-XbaⅠ带型差异较大,相同血清型的分离株PFGE-XbaⅠ带型一般具有相同图谱型或聚类在一起。本研究采用PFGE法进行分子分型分析具有流行病学意义,并探明了本地沙门菌分离株血清型与分子分型的关系。  相似文献   

9.
为明确国内鸡滑液支原体（Mycoplasma synoviae,MS）的流行情况,本研究在2016~2021年间,从山东、四川、河北等10省份共计分离到54株MS,通过多位点序列分型（multilocus sequence typing,MLST）方法对分离株进行基因分型,同时结合国内外的分离株信息,进一步分析了不同菌株间的进化关系。结果表明,54株MS分离株可分为9种ST型,分别是34、44、93、95、96、102、103、148、153,主要流行的ST型为ST34和ST93;按照进化关系可分为A-I 共9类,其中最主要的流行株为A类和E类。通过对国内外MS流行株进行遗传进化分析,可依据地域将其分为亚洲株、欧洲株、北美株和其他株,其中,中国分离株有独特的地域进化关系。本研究结果丰富了国内的MS流行病学数据,对防控与净化MS具有重要意义。  相似文献   

10.
为了解中国牛支原体的流行趋势,本试验应用已经建立的牛支原体分型方法,将中国的15株牛支原体进行MLST分型,同时结合数据库中已有的11株中国株的ST型,分析牛支原体中国株的种群结构及进化关系。分型结果显示,15株分离株均获得一样的等位基因号及ST型;共计26株中国株分属于3个ST型,即R-ST10(16/26),RST33(9/26),R-ST34(1/26),而且彼此之间只有1个等位基因的差异,10型和33型之间的差异是rpoD基因,33型和34型之间的差异是danA基因;说明目前牛支原体中国株的种群结构相对单一,流行菌株相对稳定。  相似文献   

11.
The aim of this study was to characterize oxacillin-resistant Staphylococcus aureus (ORSA) isolates from livestock environments and meat market workers by molecular epidemiological analysis. Staphylococcal enterotoxin reversed passive latex agglutination (RPLA) and multiplex polymerase chain reactions (PCR) were used to detect enterotoxin-producing S. aureus. The molecular genetic similarity of ORSA was also compared by pulse-field gel electrophoresis (PFGE) and multi-locus sequence typing (MLST). A total of 30 ORSA isolates were identified and 27 of these strains were from human sources-a higher contamination potential from human origin in the animal raising and handling field was suspected. The most common type of enterotoxin detected in this study was type B. Regarding the bacterial phylogenetic analysis of ORSA isolates, five major clusters of PFGE patterns were suggested with >80% similarity in cluster I. Seven MLST patterns were identified with the most prevalent types being ST338/ST338(slv) and ST59. Population genetic studies based on MLST have shown that major ORSA clones have emerged from six clonal complexes (CCs), with CC59 being the dominant one. In conclusion, a high prevalence of ORSA with enterotoxin type B as well as ST59 and ST338/ST338(slv) colonization was observed among livestock with human origins in this study. We suggest further tracking and comparing of the epidemiological evidence of community-acquired and hospital-acquired ORSA in human living environments and livestock-producing environments.  相似文献   

12.
The purpose of this study was to develop and apply a multilocus sequence typing (MLST) scheme to study the molecular epidemiology of Brachyspira hyodysenteriae, the aetiological agent of swine dysentery. Sequences of seven conserved genomic loci were examined in 111 B. hyodysenteriae strains. Fifty-eight of these previously had been analysed by multilocus enzyme electrophoresis (MLEE), and for some the results of pulsed field gel electrophoresis (PFGE), restriction endonuclease analysis (REA) and/or serotyping also were available. The discriminatory power of these methods was compared. The strains were divided into 67 sequence types (STs) and 46 amino acid types (AATs) by MLST. The Index of Association value was significantly different from zero, indication that the population was clonal. Eleven clonal complexes (Cc) comprising between 2 and 10 STs were recognised. A population snapshot based on AATs placed 77.5% of the isolates from 30 of the AATs into one major cluster. The founder type AAT9 included 13 strains from nine STs that were isolated in Australia, Sweden, Germany and Belgium, including one from a mallard. The MLST results were generally comparable to those produced by MLEE. The MLST system had a similar discriminatory power to PFGE, but was more discriminatory than REA, MLEE or serotyping. MLST data provided evidence for likely transmission of strains between farms, but also for the occurrence of temporal “micro-evolution” of strains on individual farms. Overall, the MLST system proved to be a useful new tool for investigating the molecular epidemiology and diversity of B. hyodysenteriae.  相似文献   

13.
Using different typing methods (MLST, spa‐, SCCmec‐ and agr‐typing), PFGE and DNA microarray‐based chip analysis, we characterized 20 MRSA strains isolated from livestock and veterinarians. PFGE analysis after macrorestriction with EagI provided seven different band patterns, which could be grouped into four clusters. One cluster consisted of all MRSA ST398 strains isolated from pigs, calves, mastitis milk and two veterinarians. One strain of ST398 from a veterinarian and the two strains of ST1 and ST8 formed the three other clusters. Antimicrobial susceptibility testing showed that 15 of 20 strains were resistant to ampicillin, cefoxitin, clindamycin, erythromycin, oxacillin, penicillin and tetracycline. All strains were susceptible to rifampin and vancomycin, 19 were susceptible to ciprofloxacin and 18 were susceptible to sulphamethoxazole/trimethoprim. Genes encoding different enterotoxins, leukotoxins and haemolysins were found in certain strains.  相似文献   

14.
The aim of the study was to evaluate the clonality of 21 strains of Enterococcus faecalis associated with arthritis and amyloid arthropathy by multilocus sequence typing (MLST). The strains originated from five countries. Fifteen of the 21 strains demonstrated the same sequence type, ST82, including a reference amyloid arthropathy strain from the Netherlands. Some of the demonstrated sequence types (ST36, ST59 and ST82) have also been described from human clinical samples while other types are reported for the first time. The results confirm previous observations that outbreaks of amyloid arthropathy seem to be clonally related and indicate a wide distribution of the predominant sequence type which was demonstrated in four countries in Europe and in the USA.  相似文献   

15.
牛源多杀性巴氏杆菌血清分型及毒力相关基因的检测研究   总被引：1，自引：0，他引：1  
为确定新疆北疆部分地区疑似病例中分离的牛源多杀性巴氏杆菌（Pasteurella multocida,Pm）流行的血清型、ST型及毒力相关基因的分布情况,本研究以分离的17株牛源Pm为研究对象,采用荚膜多重PCR分型法、脂多糖多重PCR分型法（LPS-mPCR）、多位点序列分型法（MLST）及PCR方法检测17株Pm分离株的荚膜型、脂多糖型、MLST型及7类共25个毒力相关基因的分布情况。结果显示,13株Pm的荚膜脂多糖型为A：L3型,ST型均为ST1型,4株Pm荚膜脂多糖型为B：L2型,ST型均为ST44;17株Pm毒力相关基因（exbB、exbD、fimA、fur、hgbA、hsf2、nanB、oma87、ompA、ompH、plpB、psl、ptfA、sodA、sodC、tonB和tbpA）的检出率高达100%,toxA基因的检出率为0。结果表明,从新疆北疆部分地区规模化牛场疑似病例中分离的Pm主要血清型为A：L3：ST1型。  相似文献   

16.
The molecular epidemiology of Pasteurella multocida has rarely been studied at the farm level in cattle. The aim of this study was to determine whether single or multiple strains of P. multocida tend to exist within farms. Molecular characterisation was carried out on isolates obtained from nasal swabs from 105 calves from 32 randomly selected beef and dairy farms located throughout Scotland, and from 131 calves from 20 farms in the Mayenne region of France, where sampling occurred in response to respiratory disease outbreaks. P. multocida isolates were characterised by random-amplified polymorphic DNA (RAPD) typing and pulsed-field gel electrophoresis (PFGE) using restriction enzyme ApaI. In addition, isolates representative of each farm/RAPD profile combination were typed by multilocus sequence typing (MLST). Among 105 Scottish isolates, 15 RAPD profiles were distinguished. The majority of farms (27/32) had indistinguishable profiles in all positive animals. Five farms had two profiles. Among 140 French isolates, 23 RAPD profiles were distinguished. More within-farm heterogeneity was observed although 10/20 farms had just one profile (E4) in sampled calves. Profile E4 accounted for 60% (84/140) of French isolates. PFGE was more discriminatory than RAPD but confirmed results with respect to within farm homogeneity or heterogeneity of strains, whereas MLST was not discriminatory enough for farm level epidemiology. As in other host species, either several strains or one dominant strain of P. multocida may exist within farms, with evidence for a role of management factors such as movements onto the farm in the number of strains detected.  相似文献   

17.
Pulsed-field gel electrophoresis (PFGE) analysis was developed and compared with random amplified polymorphic DNA (RAPD) method to type 18 Mycoplasma synoviae (MS) strains. All analysed strains were typeable by RAPD but only 89% of MS strains were typeable by PFGE because of DNA degradation. The discriminatory power of RAPD was greater than that of PFGE but the two techniques had a discriminatory index superior to 0.95, the threshold value for interpreting typing results with confidence. The in vitro, in ovo and in vivo reproducibility of both typing techniques was 100%. However, the interpretation of RAPD patterns was complicated because of inconsistent band intensity. Thus, these molecular typing techniques should be helpful for epidemiological studies of avian mycoplasma infections.  相似文献   

18.
Clinical specimens of small animals (n=869) were screened for the occurrence of methicillin-sensitive and methicillin-resistant Staphylococcus aureus (MSSA; MRSA) during routine microbiological examinations, and results were confirmed by a multiplex PCR strategy. The genetic relatedness of all mecA-positive S. aureus isolates was further investigated by pulsed-field gel electrophoresis (PFGE), multilocus sequence typing (MLST), PCR for Panton-Valentine leukocidine genes (PVL) and staphylococcal cassette chromosome mec-typing (SCCmec). A total of 61 S. aureus isolates were found during a 20-month period of investigation, 27 (44.3%) of them harbouring the mecA gene for methicillin-resistance. The majority of MRSA were isolated in specimens from dogs (n=18) and cats (n=4). One guinea pig and one rabbit were found to be positive for an MRSA infected site. Similarly, three exotic animals, a turtle, a bat and a parrot, were found to be infected with MRSA. PFGE and MLST analysis revealed a certain genotype ("A" and "A-1") dominating the isolate collection (23 of 27). Furthermore, one isolate showed homologous PFGE pattern to the German epidemic strain Barnim ("BE") and another one ("BE-1") was considered to be closely related. A third genotype ("B") was detected in two cases. Two different sequence types (ST) were identified among the 27 MRSA isolates. PFGE type "A" and both strains related to the Barnim epidemic strain were assigned to ST22, whereas ST239 was associated to PFGE profile "B". The present data show that certain MRSA genotypes are capable of infecting a wide spectrum of small and exotic animals, especially in clinical facilities.  相似文献   

19.
副溶血弧菌海产品分离株及临床分离株的多位点序列分型   总被引：1，自引：1，他引：0  
选取毒力调控基因toxRS和看家基因gyrB、recA作为靶基因,对浙江沿海地区40株副溶血弧菌海产品分离株与8株临床分离株进行多位点序列分型。toxRS的多态性位点比例(10.2%)虽低于gyrB(12.0%)与recA(25.4%),但与gyrB均可分辨出最多的序列型(38),具有最强的分辨力(0.986)。3个基因串联后可分出44个序列型,分辨力达0.994。副溶血弧菌分离株呈现出较大的多样性。各地的海产品分离株分布于A群、B群,而临床分离株则主要集中于A群;C群仅包括1个临床分离株。其中临床分离株C2、C5、C7与海产品分离株F24属于同一个序列型,由此可推测该序列型在地域上分布较为广泛并可引起人发生胃肠炎等。因而副溶血弧菌所引起的对公共卫生的潜在风险性不容忽视。  相似文献   

20.
Staphylococcus aureus is an important pathogen in humans and many animal species. The prevalence of different clonal types in animal species remains largely unknown. We analyzed 267 S. aureus from intramammary infections in goats (47) and sheep (220) by spa typing, multi-locus sequence typing (MLST) and antimicrobial susceptibility. The most frequent spa types in goats were t337 (N=9), t759 (N=6) and t1534 (N=5). Sheep isolates mainly belonged to spa types t1534 (N=72), t2678 (N=29) and t3576 (N=20). Eighteen novel spa-types were observed; two from goat strains, 13 from sheep and three in both species. The majority of the goat strains grouped in MLST CC133 (N=10) and ST522 (N=10), followed by CC9 (N=9), while the majority of the sheep strains were of ST522 (N=108) followed by CC133 (N=86) and CC130 (N=11). Nine new MLST types were detected; three in goat and sheep isolates (ST1739, ST1758 and ST1780), two identified in goats only (ST1740 and ST2061) and four in sheep only (ST1742, ST1743, ST1781 and ST2011). Strains showed resistance below 20% against penicillin and tetracycline; a strong association between CC-types and penicillin resistance was observed. No resistance was detected to cefoxitin, quinupristin-dalfopristin, rifampicin and vancomycin. This study suggests that ST522 is the most common S. aureus clone associated with small ruminants followed by CC133.  相似文献   

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