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蛙虹彩病毒巢式 PCR检测方法的建立 总被引：2，自引：0，他引：2
蛙虹彩病毒属(Ranavirus)病毒宿主广泛,可以感染爬行类、鱼类和两栖类,大部分病毒对宿主都有较强的致病性和致死性.为建立一种快速高效的蛙虹彩病毒的检测方法,本研究利用中华鳖虹彩病毒(soft-shelled Turtle Iridovirus,STIV)核衣壳蛋白(Major Capsid Protein,MCP)基因保守区设计内引物和外引物,建立了特异性检测流行性造血器官坏死病毒(Epizootic Haematopoietic Necrosis Virus,EHNV)、中华鳖虹彩病毒和虎纹蛙虹彩病毒(Tiger Frog Virus,TFV)的巢式PCR(巢式PCR)检测方法,并制备了重组质粒pGem-T-S作为阳性对照标准品.检测限试验结果显示,该方法可以检测102拷贝的病毒粒子.而且与传染性造血器官坏死病毒、鲤春病毒、病毒性出血性败血症病毒、斑点叉尾(鱼回)病毒、传染性胰脏坏死病毒、真鲷虹彩病毒、牙鲆弹状病毒以及锦鲤疱疹病毒等其他非蛙虹彩病毒无交叉反应.该体系具有简便、快速、敏感、特异性高、低成本等特点,为诊断与预防蛙虹彩病毒提供了一项重要的技术手段. 相似文献
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以真鲷虹彩病毒(Red-sea bream iridovirus,RSIV)主要衣壳蛋白(Major capsid protein,MCP)的基因保守片段为靶序列,利用Primer Express 3.0软件设计定量PCR引物,建立了RSIV的SYBR Green I实时定量PCR检测方法.将RSIV MCP基因连接pMD18-T载体,构建重组质粒,经过梯度稀释后作为标准品,根据标准品拷贝数(X)与Ct值的关系绘制了标准曲线,为Ct=-3.184 1gX+40.270,相关系数R2=0.996 9.熔解曲线分析表明,定量PCR产物的Tm值为82.5℃.该方法的检测限为2.20×102拷贝/反应,对流行性造血器官坏死病毒、淋巴囊肿病毒、蛙病毒3、甲鱼虹彩病毒都没有扩增反应,具有特异性.利用该方法对84批海水鱼类(石鲽、大菱鲆、鲈鱼)进行检测,其中5批鱼样品感染RSIV,并利用标准曲线对病毒含量进行了定量分析. 相似文献
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根据GenBank中已有的鱼类病毒性神经坏死病毒(NNV)RNA2基因序列,设计引物,从福建厦门具有典型NNV发病症状的斜带石斑鱼中克隆了RNA2基因的全长序列,并将序列提交到GenBank获得登录号为MF510920,命名为XMNNV。系统进化树分析结果表明XMNNV与RGNNV聚类在一起,与SJNNV、BFNNV和TPNNV等其他鱼类神经坏死病毒亲缘关系较远,说明本研究分离得到的XMNNV属于RGNNV基因型。通过超速离心方法对病毒进行提纯,得到了纯化的NNV病毒。电镜观察结果表明,病毒粒子直径20～25 nm,结构为正二十面体,与已经报道的NNV结构一致。通过对XMNNV与其它RGNNV RNA2基因进行序列比对,在保守区设计引物,运用RT-PCR方法建立了RGNNV的PCR检测方法,该方法灵敏度高达67 copies/μL。纯化的病毒对E11(条纹月鳢细胞系)和大黄鱼肌肉细胞进行感染,结果表明该病毒可以感染这两种鱼类细胞。E11细胞被感染病毒后,细胞出现空泡化,并最终导致细胞分解死亡;大黄鱼肌肉细胞感染后,细胞变圆,慢慢从培养皿壁脱落,最终解体死亡。另外,对感染后细胞进行PCR检测,结果显示为阳性,进一步确定了分离的NNV具有感染这两种细胞的能力。本研究通过电镜观察和PCR检测两种方法确定了患病石斑鱼携带NNV,通过对两种鱼类细胞的感染实验,确定了该病毒具有一定的感染能力。综上,本研究为石斑鱼NNV疾病的诊断提供了有效的方法,对石斑鱼NNV疾病的预防具有一定的指导意义。 相似文献
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根据ISAV的基因保守序列,利用LAMP Designer软件设计了6条引物,采用新型的环介导等温扩增设备进行扩增和检测,优化了反应条件,分析了所建立方法的特异性和灵敏度,并与RT-PCR和实时荧光RT-PCR进行比较。研究表明,该方法最适反应温度为64℃,反应10 min就可以观察到明显的扩增。该方法灵敏度高,检测限为78.4 fg RNA,比常规RT-PCR灵敏度高100倍,与实时荧光定量RT-PCR灵敏度相当;特异性好,与传染性胰腺坏死病毒(IPNV)、鲤春病毒血症病毒(SVCV)、出血性败血症病毒(VHSV)、鱼类病毒性神经坏死病病毒(VNNV)、鱼腹水病毒(YAV)等14种主要鱼类病毒没有交叉反应。结果表明,本研究建立了ISAV的实时荧光环介导等温扩增检测方法,实验能对整个扩增过程进行实时监测,提高检测灵敏度的同时,防止由于开盖跑电泳或加染料而导致的污染。 相似文献
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正传染性造血器官坏死病(Infectious hematopoietic necrosis,IHN)是鲑科鱼类常见的急性病毒性传染病。病原是传染性造血器官坏死病毒(Infectious hematopoietic necrosis virus,IHNV),该病毒属弹状病毒科(Rhabdoviridae)、粒外弹状病毒属(Novirhabdovirus)。世界动物卫生组织(OIE)将IHN列为必须申报的鱼类疫病。2008年11月农业部发布的《一、二、三类动物疫病病种名录》中,IHN被 相似文献
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利用纯化后的传染性胰腺坏死病毒(IPNV VP3)重组蛋白免疫BALB/c小鼠,通过细胞融合技术,采用间接ELISA和有限稀释法筛选杂交瘤细胞,利用染色体鉴定、蛋白印迹和免疫荧光等方法对单克隆抗体进行鉴定,共得到2株能稳定分泌特异性抗体的阳性细胞株,分别命名为2F1、4A7,亚类鉴定2株单抗均为IgG1亚类。ELISA检测其腹水效价,蛋白印迹检测表明获得的2株单抗均能特异性识别IPNV VP3蛋白;间接免疫荧光鉴定表明2株单抗均与IPNV发生反应;间接ELISA检测结果表明2株单抗均不与HSV、SVCV、HRV等病毒反应,与IPNV具有较强的特异性反应。 相似文献
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2008年11月～2010年11月,采集山东海域大菱鲆、石鲽、鲈鱼各20批,按照世界动物卫生组织推荐的PCR检测方法对真鲷虹彩病毒病(Red Sea Bream Iridoviral Disease,RSIVD)进行初步调查.结果显示,共检出4例RSIVD感染样品.以真鲷虹彩病毒(Red Sea Bream Iridovirus,RSIV)和传染性脾肾坏死病毒(Infectious Spleen and Kidney Necrosis Virus,ISKNV)主要衣壳蛋白基因为基础,设计简并引物,PCR扩增本次检出阳性样品的RSIV/ISKNV MCP基因.将MCP基因PCR扩增产物测序,提交GenBank,并以MCP基因为基础,对被检出的阳性样品进行虹彩病毒属系统分类,绘制进化树.由进化树得出,4例阳性病毒株均属于虹彩病毒科细胞肿大病毒属. 相似文献
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本研究针对养殖对虾6种病毒,包括白斑综合征病毒(WSSV)、传染性皮下及造血组织坏死病毒(IHHNV)、肝胰腺细小病毒(HPV)、桃拉综合征病毒(TSV)、对虾杆状病毒(BP)和传染性肌肉坏死病毒(IMNV),选择各自的基因分别设计特异性引物和探针,首先进行了单一病毒的PCR验证,在此基础上建立了同时特异性检测6种对虾病毒的多重PCR检测体系。对反应条件进行优化并进行特异性和灵敏度的验证。50μl反应体系,Mg2+的最佳浓度为5mmol/L,ExTaq酶最佳用量为3.75U,反应程序中最佳退火温度为55.5℃。6种病毒之间以及与对虾基因组都存在很好的特异性。最终经试验验证,该系统的检测灵敏度对WSSV可达104拷贝,IHHNV可达102拷贝,HPV可达104拷贝,TSV可达103拷贝,BP可达105拷贝,IMNV可达105拷贝。虽然该多重PCR方法灵敏度不如单一的PCR检测高,但是通过实际样品检测验证了该方法省时、消耗较少,又不失准确性,在实际应用中具有可靠性和应用价值。 相似文献
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A flow cytometric virus-binding assay that directly visualizes the binding and entry of infectious pancreatic necrosis virus (IPNV), infectious haematopoietic necrosis virus (IHNV) and virus haemorrhagic septicaemia virus (VHSV) to several cell lines was established. The highest efficiency of binding was shown by the BF-2 cell line and this was used to study, at the attachment level, the interactions of these cells with salmonid fish viruses in coinfections, and to further determine if the earliest stage of the viral growth cycle could explain the previously described loss of infectivity of IHNV when IPNV is present. Our results demonstrated that IPNV binds to around 88% of cells either in single or dual infections, whereas IHNV attachment always decreased in the presence of any of the other viruses. VHSV binding was not affected by IPNV, but coinfection with IHNV reduced the percentage of virus-binding cells, which suggests competition for viral receptors or co-receptors. Internalization of the adsorbed IHNV was not decreased by coinfection with IPNV, so the hypothetical competence could be restricted to the binding step. Treatment of the cells with antiviral agents, such as amantadine or chloroquine, did not affect the binding of IPNV and VHSV, but reduced IHNV binding by more than 30%. Tributylamine affected viral binding of the three viruses to different degrees and inhibited IPNV or IHNV entry in a large percentage of cells treated for 30 min. Tributylamine also inhibited IHNV cytopathic effects in a dose-dependent manner, decreasing the virus yield by 4 log of the 50% endpoint titre, at 10 mm concentration. IPNV was also inhibited, but at a lower level. The results of this study support the hypothesis that IHNV, in contrast to VHSV or IPNV, is less efficient at completing its growth cycle in cells with a simultaneous infection with IPNV. It can be affected at several stages of viral infection and is more sensitive to the action of antiviral compounds. 相似文献
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O L M Haenen H Schuetze M Cieslak S Oldenburg M A H Spierenburg I Roozenburg‐Hengst M Voorbergen‐Laarman M Y Engelsma N J Olesen 《Journal of fish diseases》2016,39(8):971-979
In spring 2008, infectious hematopoietic necrosis virus (IHNV) was detected for the first time in the Netherlands. The virus was isolated from rainbow trout, Oncorhynchus mykiss (Walbaum), from a put‐and‐take fishery with angling ponds. IHNV is the causative agent of a serious fish disease, infectious hematopoietic necrosis (IHN). From 2008 to 2011, we diagnosed eight IHNV infections in rainbow trout originating from six put‐and‐take fisheries (symptomatic and asymptomatic fish), and four IHNV infections from three rainbow trout farms (of which two were co‐infected by infectious pancreatic necrosis virus, IPNV), at water temperatures between 5 and 15 °C. At least one farm delivered trout to four of these eight IHNV‐positive farms. Mortalities related to IHNV were mostly <40%, but increased to nearly 100% in case of IHNV and IPNV co‐infection. Subsequent phylogenetic analysis revealed that these 12 isolates clustered into two different monophyletic groups within the European IHNV genogroup E. One of these two groups indicates a virus‐introduction event by a German trout import, whereas the second group indicates that IHNV was already (several years) in the Netherlands before its discovery in 2008. 相似文献
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A field survey was carried out to study the occurrence and distribution of viruses causing diseases of major impact in fish farming, namely viral haemorrhagic septicaemia (VHS), infectious haematopoietic necrosis (IHN) and infectious pancreatic necrosis (IPN) in farmed and wild fish in Switzerland. The presence of VHS virus (VHSV), IHN virus (IHNV) and IPN virus (IPNV) in the tissue samples was tested by virus isolation in cell cultures, and subsequent virus identification by immunofluorescence. The sera were screened for anti-VHSV antibodies (VHSV-AB) using a serum plaque neutralization test with complement addition. These data were then compared with results of a similar survey performed in 1984/85, and with data from routine diagnostic work completed at the Centre for Fish and Wildlife Health (FIWI) of the University of Bern from 1978 to 2001. Sampling sites included private and government fish farms as well as natural habitats from all major river catchments in Switzerland. In 2000/01, 522 tissue samples and 1910 sera were collected from 3400 fish. In 1984/85 1239 tissue samples and 694 sera were collected from 1628 fish. During the last 24 years of routine diagnostics at the FIWI, 1776 tissue samples were examined for presence of viruses. The results of the tissue analysis from the surveys in 1984/85 and 2000/01 showed low numbers of sites with virus-positive fish (five VHSV, three IPNV and three VHSV, one IPNV, respectively) in Swiss fish farms and rivers. The sites with virus-positive fish were located throughout the country. The decline in virus-positive cases observed between the two surveys agrees with data from the routine diagnostic work of the FIWI which show a decrease in total virus isolations from approximately 35 cases per year in the late 1970s, to approximately 10 cases per year during the last 10 years. However, in 1984/85 8.3% (58 of 694 serum samples) and in 2000/01 6.3% (121 of 1910 serum samples) proved to be positive for VHSV-AB. The 58 positive samples in 1984/85 originated from 40 of 175 sites (23%) and the 121 positive samples in 2000/01 were from 84 of 217 (29%) sites. These results are indicative of a wider distribution of VHSV than expected from the results of the virus isolations. 相似文献
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Ana C. A. S. Pinheiro Enrico Volpe Donatella Principi Santino Prosperi Sara Ciulli 《Aquaculture International》2016,24(1):115-125
The major viral diseases that affect rainbow trout (Oncorhynchus mykiss) are viral haemorrhagic septicaemia, infectious haematopoietic necrosis, infectious pancreatic necrosis and sleeping disease. In the presented study, we developed a multiplex RT-PCR (mRT-PCR) assay for the simultaneous detection of these four rainbow trout viruses in a single assay. The choice of primers was carried out based on the expected size of the fragments, the temperature and time required for the amplification, and the specificity for the target sequence. Firstly, the method was optimised using reference strains of viral haemorrhagic septicaemia virus (VHSV), infectious haematopoietic necrosis virus (IHNV), infectious pancreatic necrosis virus (IPNV) and sleeping disease virus (SDV) cultivated with permissive cell culture lines; subsequently, the method was used for the identification of these viral infections in rainbow trout samples. Twenty-two samples of rainbow trout, clinically suspected of having viruses, were analysed by the developed method to detect the presence of the four viruses, by directly analysing the animal tissues. The mRT-PCR method was able to efficiently detect the viral RNA in infected cell culture supernatants and in tissue samples, highlighting the presence of single infections as well as co-infections in rainbow trout samples. VHSV/SDV and IHNV/SDV co-infections were demonstrated for the first time in rainbow trout. The mRT-PCR method was revealed to be an accurate and fast method to support traditional diagnostic techniques in the diagnosis of major viral diseases of rainbow trout. 相似文献
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M P Polinski T R Fehringer K A Johnson K R Snekvik S E LaPatra B R LaFrentz S C Ireland K D Cain 《Journal of fish diseases》2010,33(7):559-570
In this study, susceptibility and potential carrier status of burbot, Lota lota, were assessed for five important fish pathogens. Burbot demonstrated susceptibility and elevated mortality following challenge with infectious haematopoietic necrosis virus (IHNV) by immersion and to Aeromonas salmonicida by intraperitoneal (i.p.) injection. IHNV persisted in fish for at least 28 days, whereas A. salmonicida was not re-isolated beyond 17 days post-challenge. In contrast, burbot appeared refractory to Flavobacterium psychrophilum following intramuscular (i.m.) injection and to infectious pancreatic necrosis virus (IPNV) by immersion. However, i.p injection of IPNV resulted in re-isolation of virus from fish for the duration of the 28 day challenge. Renibacterium salmoninarum appeared to induce an asymptomatic carrier state in burbot following i.p. injection, but overt manifestation of disease was not apparent. Viable bacteria persisted in fish for at least 41 days, and bacterial DNA isolated by diagnostic polymerase chain reaction was detected from burbot kidney tissue 90 days after initial exposure. This study is the first to investigate susceptibility of burbot to selected fish pathogens, and this information will aid in efforts to culture and manage this species. 相似文献
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Yong Li Peng jia Fangzhao Yu Wangdong Li Can Mao Meisheng Yi Qunhong Gu Kuntong Jia 《Journal of fish diseases》2022,45(1):141-151
Yellowfin sea bream (Acanthopagrus latus) is an important economic fish, which is seriously threatened by various fish viruses. In this study, a cell line designated as ALL derived from the liver of yellowfin sea bream was developed and characterized. The cell line grew well in Dulbecco's modified Eagle's medium containing 10%–20% foetal bovine serum at 28°C. Amplification of the cytochrome B gene indicated that ALL cells originated from yellowfin sea bream. The modal chromosome number of ALL cells was 48. ALL cells were efficiently transfected with pEGFP-N3 plasmids, indicating the potential application of ALL cells in exogenous gene manipulation studies. ALL cells were susceptive to three main fish viruses, including viral haemorrhagic septicaemia virus (VHSV), red-spotted grouper nervous necrosis virus (RGNNV) and largemouth bass virus (LMBV). The replication of VHSV, RGNNV and LMBV in ALL cells was confirmed by quantitative real-time polymerase chain reaction, virus titre and transmission electron microscopy assays. Moreover, ALL cells could respond to VHSV, RGNNV and LMBV infections, as indicated by the differential expression of antiviral genes involving in the innate immune response. In conclusion, the newly established ALL cell line will be an excellent in vitro platform for the study of the virus–yellowfin sea bream interaction. 相似文献