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1.
J. Lee    J. B. Yoon    J.-H. Han    W. P. Lee    J. W. Do    H. Ryu    S. H. Kim    H. G. Park 《Plant Breeding》2010,129(1):35-38
As one of the genic male sterility (GMS) materials in chili pepper ( Capsicum annuum L.), GMS1 has been used for commercial F1 hybrid seed production. The male sterility of GMS1 is controlled by a recessive nuclear gene, named ms 1 . In this study, we developed DNA markers linked to the ms 1 locus using a combination of bulked segregant analysis and amplified fragment length polymorphism (AFLP) in a segregating sibling population. From the screening of 1024 AFLP primer combinations, the AFLP marker E-AGC/M-GTG (514 bp) was identified as being linked to the ms 1 locus at a distance of about 3 cM. Based on internal sequencing analysis of the E-AGC/M-GTG marker between male fertile and sterile plants, we identified three small deletions with a size of altogether 42 bp in the male-fertile plant and developed a codominant sequence characterized amplified region (SCAR) marker. This SCAR marker may be valuable for marker-assisted breeding in the hybrid seed production system of chili pepper using the GMS1 line.  相似文献   

2.
The green peach aphid, here abbreviated as green peach aphid (GPA), is a significant global pest of pepper. Conventional insecticide use risks the development of resistance and harms beneficial insects, whereas the deployment of resistant pepper cultivars offers an effective, economical and eco-friendly management strategy. However, no GPA resistance gene has yet been identified in pepper. In this study, greenhouse and field screening for resistance to GPA in 24 pepper cultivars identified 'ZDC' as highly resistant and 'DYJJ' as highly susceptible. Subsequent inheritance analysis using these cultivars as parents showed that the segregation ratio of resistant and susceptible offspring was 1:1 for F1 plants and 3:1 for F2 plants. This indicated that pepper resistance to GPA was controlled by a single dominant gene. The highly resistant cultivar 'ZDC' may enable incorporation of resistance in future breeding programmes following further investigations to establish a fuller understanding of the genetics of GPA resistance in this species.  相似文献   

3.
利用显性标记ST10对96份江苏省杂草稻基因型的分析   总被引：1，自引：0，他引：1  
本研究利用显性标记ST10对96份江苏省部分地区杂草稻抗条纹叶枯病基因进行检测,同时对供试材料进行了田间抗性调查。研究结果表明,在96份杂草稻材料中,有5份材料能够扩增出727bp的ST10特异条带,91份材料没有获得PCR产物,说明其中5份材料可能携带Stv-bi基因,而其它91份材料不携带该基因。根据田间调查结果显示96份杂草稻均抗条纹叶枯病,推测91份不携带Stv-bi基因的杂草稻材料中含有其它抗病基因。本研究结果为开发杂草稻抗病基因提供参考。  相似文献   

4.
Genic male sterility (GMS) has long been used as a tool for hybrid seed production in chili pepper (Capsicum annuum L.). We developed DNA markers linked to the GMS ms 3 gene in a segregating population using bulked segregant analysis (BSA) and amplified fragment length polymorphism (AFLP) techniques. The segregating population was subjected to BSA-AFLP with 512 primer combinations. Three AFLP markers (Eagg/Mccc276, Eagc/Mctt178, and Ecag/Mtgc204) were identified as tightly linked to the ms 3 locus. Among them, we converted the AFLP marker Ecag/Mtgc204 to the cleavage amplified polymorphic sequence (CAPS) marker, named GMS3-CAPS, based on sequencing analysis of internal and flanking regions for the markers between male-fertile and sterile plants. This marker will be useful for pepper breeding using the GMS system.  相似文献   

5.
We recently mapped the Pp523 locus that includes a single, dominant gene conferring resistance to downy mildew expressed in adult plants to a 75.1 cm long linkage group on a genetic linkage map of Brassica oleracea L. More recently, we identified a new AFLP marker 2.8 cm downstream from the resistance gene. The five DNA markers within an 8.5 cm region encompassing the Pp523 gene were cloned and sequenced. Three of these markers were transformed into SCARs (sequence characterised amplified regions), however, two among them were monomorphic and were analysed as CAPS (cleaved amplified polymorphic sequence) markers among the mapping population. Searched against genomic databases, the five B. oleracea DNA-marker sequences matched Arabidopsis thaliana L. gene sequences that delimit a conserved syntenic region in the top arm end of chromosome 1 of this last species. Considering the close genetic relatedness between both species, the information on this specific genomic region in A. thaliana is particularly useful for the construction of a fine-scale map of the corresponding genomic region in B. oleracea. The identified SCAR and CAPS markers can be used for marker assisted selection (MAS) in breeding programs aimed at the introgression of the Pp523 resistance locus, allowing the reliable indirect identification of plants harbouring the resistance gene with a margin of error of approximately six in ten-thousand selected plants.  相似文献   

6.
豌豆品系X9002抗白粉病基因鉴定   总被引：6，自引：0，他引：6  
白粉病是豌豆的主要病害之一,在全球范围内引起严重经济损失。防治豌豆白粉病最有效、经济和环境友好的方法是利用抗病品种。迄今,2个隐性抗白粉病基因er1、er2和一个显性抗白粉病基因Er3已在豌豆中被鉴定,其中er1基因在世界上被广泛应用于抗病品种培育。er1基因隶属MLO基因家族,其抗性由豌豆Ps MLO1基因座位功能丧失产生。X9002是甘肃省农业科学院培育的一个半无叶(afila)抗白粉病豌豆品系。本研究对X9002抗白粉病基因进行鉴定,开发用于抗白粉病基因选择的分子标记。遗传分析表明X9002对白粉病抗性由1个隐性单基因控制,SSR标记将该基因定位到豌豆第VI连锁群er1座位区域,标记AD60和c5DNAmet与其连锁。Ps MLO1基因序列分析发现,X9002存在一个未知大小和身份的片段插入,该类型突变也发生在含有er1-2等位基因的豌豆品种Stratagem和Franklin,表明X9002抗白粉病基因为er1-2。一个鉴定er1-2等位基因的功能标记Ps MLO1-650被开发,该标记为互引相标记,仅在感病植株中扩增,可以有效用于分子辅助选择。  相似文献   

7.
小麦合成种M53抗白粉病基因的RAPD和SSR标记   总被引：12，自引：2，他引：12  
胡英考  辛志勇 《作物学报》2001,27(4):415-419
运用RAPD和SSR技术，采用分离群体分组分析法(BSA)进行了小麦合成种M53抗白粉病基因连锁的分子标记研究。结果表明，M53的抗白粉病基因由显性单基因控制，RAPD标记OPL09-1700与抗病基因连锁，遗传距离为16.8cM。SSR标记Xgwm205也与抗白粉病基因连锁，遗传距离为9.3cM，通过SSR标记将该基因定位于5DS，标记与基因间的排列顺序  相似文献   

8.
G. Chen    J. Chong    S. Prashar    J. D. Procunier 《Plant Breeding》2007,126(4):379-384
Crown rust caused by Puccinia coronata f. sp. avenae Eriks is a serious problem for oat production worldwide and pyramiding multiple resistance genes into new cultivars is a key objective of breeders. Many race specific resistance genes have been mapped and markers that are closely linked to them have been identified. However, the use of these markers in oat breeding practice has been limited due to the economics of marker assisted selection (MAS) deployment. Single nucleotide polymorphism (SNP) markers have been demonstrated to have a high-throughput capability with relatively low cost and numerous semi-automated SNP scoring platforms exist. Gene Pc94 has remained highly effective since it was first tested on the Canadian crown rust populations in 1993 and is one of the few effective genes available in Western Canada. In the present study, PCR products were amplified using primers derived from sequences of amplified fragment length polymorphism bands which have been shown to be linked to Pc94 . Genomic DNA from genotypes, with and without the Pc94 gene, were used as the PCR templates. By comparative sequence alignment amongst the PCR fragments, many putative SNP sites were identified. From these sites, four SNP sites were selected and validated by the single base extension method. One SNP site, Pc94 -SNP1a, was tested on two F2:3 populations segregating for the resistance gene. The map distances between the SNP marker and Pc94 were 2.1 and 5.4 cM in the two different populations. Various oat cultivars and germplasm lines were also tested for a wider application of the SNP marker. Fluorescent technology and capillary electrophoresis allowed for the semi-automated, fairly high-throughput scoring of the SNP markers.  相似文献   

9.
Application of the thermo-sensitive genic male sterile (TGMS) system has a great potential to increase the efficiency of hybrid rice breeding. An indica rice TGMS mutant, 0A15-1, was crossed with a fertile indica line Guisi-8 to map the gene responsible to the TGMS. A RAPD (random amplified polymorphic DNA) maker, S187-770, linked to the TGMS gene at a distance of 1.3 cM in coupling phase was identified. The S187-770 was then cloned and sequenced to develop a dominant SCAR (sequence characterized amplified region) marker. Homology search against rice genome DNA sequence database indicated that S187-770 located on the short arm of chromosome 3 and close to centromere as a single copy sequence. This SCAR marker can be used in the marker-assisted transfer of this gene to different genetic background. As no other TGMS gene has been mapped on rice chromosome 3, the gene from 0A15-1 is a new TGMS gene and tentatively designated tms6(t).  相似文献   

10.
A simple sequence repeat (SSR) marker composed of a tetra nucleotide repeat is tightly linked to a major gene of common bean (Phaseolus vulgaris L.) conferring resistance to common bacterial blight (CBB) incited by Xanthomonas axonopodis pv. phasoli (Xap). This SSR is located in the third intron region of the common bean nitrate reductase (NR) gene, which is mapped to linkage group (LG) H7, corresponding to LG B7 of the bean Core map. Co-segregation analysis between the SSR marker and CBB resistance in a recombinant inbred line (RIL) population demonstrated a tight linkage between the NR gene-specific marker and the major gene for CBB resistance. In total, the marker explained approximately 70% of the phenotypic variation in the population. Because it is co-dominant, this SSR marker should be more efficient for marker-assisted selection (MAS) than dominant/recessive random amplified polymorphic DNA (RAPD) or sequence characterized amplified region (SCAR) markers that have been developed, especially for early generation selection. This revised version was published online in August 2006 with corrections to the Cover Date.  相似文献   

11.
Y. Minamiyama    S. Kinoshita    K. Inaba  M. Inoue 《Plant Breeding》2005,124(3):288-291
The complete tack of pungency in pepper (Capsicum annuum L.) is controlled by a single recessive gene (c). To develop a molecular marker linked to the C locus, two segregating F2 populations (TM2 and TF2) derived from crosses between occasionally pungent and non‐pungent peppers in C. annuum were used. Using the RAPD (random amplified polymorphic DNA) technique in combination with a bulked segregation analysis, two RAPD markers, OPD20‐800 and OPY09‐800, were obtained. Of the two markers, the more closely linked marker. OPY09‐800, was converted into a codominant CAPS (cleaved amplified polymorphic sequence) marker using data from the alignment of the two allelic sequences. This CAPS marker was linked to the C locus (3.6 cM in the TF2 population), and polymorphism was detected among accessions within C. annuum. This marker might be helpful for the selection of a c gene in backcross and progeny tests in a conventional breeding system.  相似文献   

12.
Fusarium wilt is one of the most widespread diseases of pea. Resistance to Fusarium wilt race 1 was reported as a single gene, Fw, located on linkage group III. The previously reported AFLP and RAPD markers linked to Fw have limited usage in marker‐assisted selection due to their map distance and linkage phase. Using 80 F8 recombinant inbred lines (RILs) derived from the cross of Green Arrow × PI 179449, we amplified 72 polymorphic markers between resistant and susceptible lines with the target region amplified polymorphism (TRAP) technique. Marker–trait association analysis revealed a significant association. Five candidate markers were identified and three were converted into user‐friendly dominant SCAR markers. Forty‐eight pea cultivars with known resistant or susceptible phenotypes to Fusarium wilt race 1 verified the marker–trait association. These three markers, Fw_Trap_480, Fw_Trap_340 and Fw_Trap_220, are tightly linked to and only 1.2 cM away from the Fw locus and are therefore ideal for marker‐assisted selection. These newly identified markers are useful to assist in the isolation of the Fusarium wilt race 1 resistance gene in pea.  相似文献   

13.
Rs1046AB is a line which is true breeding for a dominant genetic male sterility gene (Ms) but which is a mixture of male fertile and sterile individuals (a two-type line) because it is segregating for a dominant suppressor gene (Rf). This system provides a promising alternative to the CMS system for hybrid breeding in Brassica napus. In order to identify molecular markers linked to the rf gene, a near-isogenic line (NIL) population from the cross between a sterile individual (MsMsrfrf) and a fertile individual (MsMsRfrf) in Rs1046AB was subjected to amplified fragment length polymorphism (AFLP) analysis, with a combination of comparing near isogenic lines (NILs) and bulked segregant analysis (BSA). From 2,816 pairs of AFLP primers, six fragments showing polymorphism between the fertile and sterile bulks as well as the individuals of the bulks were identified. Linkage analysis indicated that the six AFLP markers are tightly linked to the Rf gene and all are distributed on the same side. The minimum genetic distance between the Rf gene and a marker was 0.7 cM. Since the AFLP markers are not suitable for large-scale application in MAS (marker-assisted selection), our objective was to develop a fast, cheap and reliable PCR-based assay. Consequently, three of the four closest AFLP markers were converted directly to sequence characterized amplified region (SCAR) markers. For the other marker a corresponding SCAR marker was successfully obtained after isolating the adjacent sequences by PCR Walking. The available SCAR markers of the Rf gene will greatly facilitate future breeding programs using dominant GMS to produce hybrid varieties.  相似文献   

14.
Early selection of scab-resistant apple seedlings can be enhanced by the use of markers tightly linked to the Vf resistance gene. Two sequence characterized amplified regions (SCAR) markers have been obtained from previously described random amplified polymorphic DNA (RAPD) markers. AM19-SCAR is a codominant marker, while AM19-SCAR is dominant, as is the RAPD from which it was derived. A highly detailed map in the vicinity of the Vf gene was built through the cumulative analysis of about 600 seedlings from six different controlled crosses. The usefulness of these and other SCAR markers will be discussed in relation to combining the traditional phenotypic selection with MAS. The availability of two codominant, tightly linked markers flanking both sides of the resistance gene (AL07-SCAR and M18-CAPS) also makes it easy to identify the seedlings homozygous for the resistance gene.  相似文献   

15.
D. F. Hong    J. Liu    G. S. Yang    Q. B. He 《Plant Breeding》2008,127(1):69-73
Rs1046AB is a dominant genic male sterility (DGMS) line in rapeseed, in which the sterility has always been thought to be conditioned by the interaction of a male sterility gene ( Ms ) and its non-allelic restorer gene ( Rf ). This system provides not only a tool for assisting in recurrent selection but also a promising system for hybrid production. Based on previous studies, two amplified fragment length polymorphism markers linked with the Ms gene were converted into a dominant and a co-dominant sequence characterized amplified region (SCAR) marker, respectively. The putative linear order relationship of three dominant SCAR markers with the same genetic distance from the Rf gene, was also determined by an examination of whether the homologues of these markers are present or not in different lines carrying Rf . A bigger fragment generated by the closest marker linked to the Rf gene was observed in all lines carrying the recessive allele rf , suggesting that this marker is a co-dominant marker, which was further confirmed by nucleotide sequence comparison of these fragments. SCAR markers specific for Ms and Rf will be especially valuable in marker-assisted DGMS three-line breeding.  相似文献   

16.
小麦抗条锈病基因YrZH84的RGAP标记及其应用   总被引：4，自引：0，他引：4  
利用RGAP标记及基于标记基因型和表型选择的分离群体分组分析法,对小麦抗条锈病骨干亲本周8425B和感病品种中国春及其F2分离群体进行分析,获得了与抗条锈基因YrZH84紧密连锁的RGAP标记Xrga-1,连锁距离为0.8 cM。其RGA片段长度为343 bp,BLAST分析结果表明,该RGA序列与已克隆的大麦抗秆锈病基因Rpg1核苷酸序列同源性为93%,与大麦抗白粉病基因Mla家族的核苷酸序列同源性为92%。用标记Xrga-1对黄淮麦区58个小麦品种(系)进行了检测,结合系谱分析和抗病性鉴定结果,发现周8425B的衍生品种周麦11、周麦17、周麦20、周麦22、矮抗58、04中36、源育3号、05中37、宛抗18、豫展10号携带抗条锈病基因YrZH84。这些研究结果对小麦抗条锈病分子育种和YrZH84基因克隆有重要作用。  相似文献   

17.
Beet mosaic virus (BtMV) is an aphid transmitted, viral disease of beet found worldwide. The Bm gene, a resistance gene effective against BtMV, was identified in the sugar beet line 8500 and backcrossed into a C37 background to produce line C719. Three populations were developed from the cross of line C719 with the susceptible line C37 with the intent of developing markers for use in marker‐assisted selection. The F2 progeny of three crosses were scored for resistance. Two of the three populations conformed to a 3 : 1 ratio, indicating a single gene trait. Sequence characterized amplified region (SCAR) markers were developed by using bulked segregant analysis combined with random amplified polymorphic DNA type markers. The markers showed close association to the Bm resistance gene and were effective in all three populations. The A1 allele for genetic male sterility also was found to be associated with Bm and the SCAR marker. Development of a single‐nucleotide polymorphism marker from the SCAR sequence was used to validate linkage to chromosome 1 using separate mapping populations. This marker will be useful for the introgression of the Bm gene into germplasm.  相似文献   

18.
分子标记ST10对水稻条纹叶枯病抗性基因Stv-b~i的检测   总被引：2，自引：0，他引：2  
近年来,利用与抗病基因紧密连锁的分子标记进行辅助选择已经成为抗病育种的重要手段。本研究利用显性标记ST10对24个水稻品种以及24个水稻品种中的镇稻88/武育粳3号和武运粳7号/徐稻3号的2个F2群体进行检测。PCR结果显示,17个抗病品种有8个能扩增出约727bp的目标片段;在镇稻88/武育粳3号杂交组合中,感病亲本武育粳3号和F2群体中的8个感病单株均不能扩增出目标片段,抗病亲本镇稻88、F1和13个不感病单株中的11株都能够扩增出目标片段;用于检测的武运粳7号/徐稻3号的F2群体中,8株感病单株没有检测出目标片段,而13株不感病的单株有9株扩增出目标片段。结果表明,ST10与条纹叶枯病抗性基因Stv-b^i紧密连锁,表现为共分离。  相似文献   

19.
M. C. Zhang    D. M. Wang    Z. Zheng    M. Humphry    C. J. Liu 《Plant Breeding》2008,127(4):429-432
Powdery mildew (PM) can cause significant yield loss in mungbean and several loci conferring resistance to this disease have been identified. A restriction fragment length polymorphism (RFLP) marker (VrCS65) linked closely to one of these loci was used to screen a mungbean bacterial artificial chromosome (BAC) library and positive BAC clones identified were used to develop simple sequence repeat (SSR or microsatellite) and sequence tagged site (STS) markers. Four of the new PCR markers (including two SSRs and two STSs) co-segregated with the original RFLP marker VrCS65, and another SSR marker (VrCS SSR2) was located 0.5 cM away from it. These PCR-based and locus-specific markers could be useful in breeding cultivars with enhanced resistance to PM and in the further characterization of the locus including the isolation of gene(s) responsible for the resistance.  相似文献   

20.
源于叙利亚小麦ICA31抗条锈病基因分析及分子标记研究   总被引：1，自引：0，他引：1  
遗传分析表明,小麦材料ICA31携带一个显性抗条锈病基因,对流行的优势条锈菌小种条中30,31,32免疫;据等位性测定,ICA31抗条锈基因与已知抗锈基因Yr5、Yr10、Yr15不等位;从抗源的系谱分析,该基因来源于叙利亚普通小麦品系叙18;利用微卫星标记和分组分析(BSA)法,筛选到与该抗条锈病基因（Yr-Syria）紧密连锁的SSR标记WMS11-193;对F2分离群体142个单株分析结果表明,该抗条锈病基因（Yr-Syria）与WMS11-193间遗传距离为2.1cM;将Yr-Syria定位于小麦1BS上;为该基因进行抗条锈小麦分子辅助育种打下基础。  相似文献   

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