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1.
Large-scale reforestation programmes are a major source of unwarranted gene flow and can have profound consequences on local genetic diversity. Recently, ash has been introduced to Ireland from continental Europe to stock plantations but has often exhibited poor stem form. It was not known whether these trees were Fraxinus excelsior, Fraxinus angustifolia or interspecific hybrids that are known to occur in continental Europe. F. excelsior is the only native ash in Ireland, so the introduced populations represent a potential threat for the genetic diversity of native populations. We characterized the introduced trees within two plantations (Clonee and Kildalkey) using morphological characters and six microsatellite markers. Samples from continental Europe were included for comparison. Plantations exhibited higher genetic diversity than control populations because our data suggest they contain a mixture of several provenances. There was a small but significant differentiation between plantations and control populations (ФCT = 0.0211). Bayesian analysis to infer population structure and to assign introduced individuals to reference populations clearly demonstrated the presence of hybrid individuals within the plantations. The percentage of trees detected with potential hybrid origin ranged from 28 to 58 % depending on the plantation and the threshold data analysis level chosen. Most hybrids could be considered cryptic because there was a lack of intermediate morphology for hybrid individuals that mainly clustered with F. excelsior. The results indicated that the source of material at the two plantation sites differed. Management options to minimize the impact of these introduced populations are discussed.  相似文献   

2.
Taxus chinensis and T. wallichiana in have been threatened in their distribution areas in recent decades because of their over-exploitation and reduction and destruction of native habitats. Determining the genetic diversity in populations of the two species will provide guidelines for their protection and preservation. Two hundred and fifteen trees from six populations of T. chinensis and 150 sampled trees of T. wallichiana were sampled. Six microsatellite primer pairs selected from 16 primer pairs were used to investigate genetic variation at the population and species levels. Five yielded polymorphic alleles, and among the 13 putative alleles amplified, 11 were polymorphic (accounting for 76.33 %).Shannon’s information index (I) and percentage of polymorphic bands (PPB) (I = 0.202 and PPB = 67.22 % for T. chinensis; I = 0.217 and PPB = 65.03 % for T. wallichiana). Both species had low levels of genetic diversity (mean H o = 0.107, H e = 0.121 for T. chinensis; H o = 0.095, H e = 0.109 for T. wallichiana). Genetic differentiation among populations was higher (F ST = 0.189) for T. chinensis and lower (0.156) for T. wallichiana, indicating limited gene flow (Nm) among populations for T. chinensis (0.68) and T. wallichiana (0.65). Variation among individuals of T. chinensis was 63.59 and 73.12 % for T. wallichiana. Thus, the threatened status of the two conifers is related to a lack of genetic diversity. All populations are isolated in small forest remnants. An ex situ conservation site should be established with a new population for these species that comprises all the genetic groups for the best chance to improve their fitness under environmental stresses.  相似文献   

3.
The aim of this study was to elucidate the introduction history of P. mugo in the unique landscape of the Lithuanian seaside spit of Kursiu Nerija by assessing its genetic structure and the genetic diversity. The individuals were sampled in 12 populations within an area of 3 km × 50 km along the Lithuanian part of Kursiu Nerija. P. mugo was introduced over 200 years ago to prevent sand erosion by establishing a forest cover. Chloroplast DNA polymorphism of 220 individuals of P. mugo together with 18 P. sylvestris and 11 putative P. sylvestris × P. mugo hybrids was assessed by the aid of five microsatellite markers. The standard intra-population diversity indexes were calculated. The intra-specific variation between distinct morphotypes as well as the population differentiation within the most spread P. mugo ssp. rotundata morphotype was assessed based on the haplotype frequencies by hierarchical AMOVA, GST/RST test, UPGMA clustering and PCA methods. The genetic diversity of P. mugo in Kursiu Nerija was high (He = 0.95; 83 different haplotypes). All except one of the P. mugo populations sampled contained a notable share of private haplotypes. AMOVA revealed high intra-specific diversity but low differentiation between the P. mugo populations. Most of the haplotypic variance was within populations. The UPGMA clustering produced groups more corresponding to the sub-species morphotypes than the geography of the populations. There was no geographical pattern of reduction in genetic diversity towards the younger plantations. A strong candidate for a species-specific DNA marker was found. After several events of introduction, the genetic diversity of P. mugo in Kursiu Nerija is very high and is structured based on the sub-species morphotypes rather than geography. The high frequency of shared and notable frequency of private haplotypes in most of the populations indicate that the major part of the P. mugo material originates from a number of geographically and genetically related sources, which more likely are introductions from abroad that the local collections. The high frequency of private haplotypes in the northernmost populations leaves a possibility for minor introductions from other genetically distinct sources. The absence of private haplotypes in one of the sampled populations indicates the use of local seed collections. The large number of shared haplotypes provides a strong evidence for a geneflow among the P. mugo taxa.  相似文献   

4.
World hazelnut production is based on European hazelnut (Corylus avellana) and is limited by the narrow climatic requirements of this species. The cold hardiness and disease resistance of the American hazelnut (Corylus americana) offer opportunities to expand production to new areas including the Upper Midwest (USA). The American hazelnut is a phenotypically diverse species. This study used ten microsatellite marker loci to investigate genetic diversity in 1140 individuals sampled from 25 populations across Wisconsin, Iowa, Minnesota and North Dakota. Overall, the marker loci were highly polymorphic (Ho = 0.69, He = 0.78, PIC = 0.84) with 7–13 alleles per locus. There was very high genetic diversity within populations (90% of the total) and some tendency toward population differentiation. Mantel’s test showed that genetic distance among the populations was not correlated with geographic distance. We conclude that selection of individuals for use in breeding should be based primarily on phenotype (productivity, nut size, percent kernel, ease of harvest), with care to include representatives of genetically differentiated populations.  相似文献   

5.
Baobab (Adansonia digitata L) belonging to Bombacaceae family, is one of the most widely used indigenous priority tree species in sub-Saharan Africa, valued in the cosmetic industry for its seed oil, and powdery fruit pulp for juice making. Baobab has high potential for domestication in southern Africa, therefore understanding its genetic diversity and population structuring is warranted. The study investigated the level of genetic diversity and differentiation of five populations of A. digitata L. sampled from four diverse silvicultural zones in Malawi. Variation at nine microsatellite loci were examined in 150 individual trees. Low mean genetic diversity was expressed through genetic diversity indices: Nei’s genetic diversity (h, 0.18 ± 0.03), Shannon Information Index (I, 0.21 ± 0.07), observed number of alleles (na, 1.47 ± 0.10), effective number of alleles (ne, 1.23 ± 0.04) and percentage polymorphic loci (pp, 48 %). The low genetic variation found is attributed to the population growing in marginal areas of genetic centre of diversity of the species, anthropogenic factors and founder effects. Moderate genetic differentiation was observed among populations (Gst = 0.13) indicating the presence of a large number of common alleles resulting in a homogenisation effect. Clustering of individual trees by genetic similarity coefficients indicated that mainland trees were genetically closer than the trees on Likoma Island. Mantel’s test showed a weak positive insignificant correlation (Z = 0.12; P = 0.64) between genetic distance among populations and actual distance on the ground implying that geneflow was not directly influenced by isolation by distance. The results suggest that seed distribution and tree improvement should recognise the presence of ecotypes and conservation measures should protect all the populations due to existence of private alleles which are of adaptive importance.  相似文献   

6.
Gmelina arborea is a valuable plantation tree species that is native to South and Southeast Asia. In this study, 534 samples representing 19 natural populations in India, China, Thailand and Myanmar were analyzed with 10 polymorphic microsatellite markers. The genetic diversity analysis revealed highly polymorphic loci (Na?=?16.4), a good level of genetic diversity (Ho?=?0.56; He?=?0.83) and the deficiency of heterozygotes in G. arborea populations evidenced by positive fixation index and deviation from Hardy?CWeinberg Equilibrium in all loci and most populations. The Analysis of Molecular Variance attributed 21, 10 and 69% of total genetic diversity to among-region, among-population (within region) and within-population variation. Unweighted Pair Group Method with Arithmetic Mean dendrogram and Principle Coordinate Analysis revealed three separate clusters composed of China, India and Thailand/Myanmar that were consistent with geographical distance and the presence of natural barriers to gene flow. Populations from within India grouped together genetically consistent with geographical locations, with the exception of the Nowgong population (eastern India), that might have originated from the Kasa area (western India) with which it has high genetic similarity. Understanding genetic diversity and structure of G. arborea populations serve as an important reference for tree breeding programs and conservation strategy. Breeding populations of G. arborea should include selections from each of the major geographic regions to maximize genetic diversity and heterosis. Vegetative propagated clones of elite trees can be used for plantation to address the issue of high level of segregation among seed derived plants.  相似文献   

7.
Nineteen Chinese populations of Castanopsis hystrix were examined to quantify genetic diversity and genetic structure at chloroplast DNA. Microsatellites (SSR) were analyzed by PCR using conserved primers. The average within population gene diversity (HS), the total gene diversity (HT), and the differentiation for unordered alleles (GST) and for ordered alleles (NST) were measured. Fourteen different haplotypes were detected, two of them very common. The level of differentiation among populations (GST = 23.6%) indicates a highly efficient seed dispersal mechanism. In addition, the difference between GST and NST for the species is not significant, suggesting that the phylogeographic structure is weak or absent. The geographical pattern of C. hystrix haplotypes could be attributed to its migration from the numerous and scattered refugia, where the species confined during the last glacial period. These results provide an important insight into patterns of postglacial recolonization of this tree species.  相似文献   

8.
There is growing interest in using switchgrass (Panicum virgatum L.) as a biofuel intercrop in forestry systems. However, there are limited data on the longevity of intercropped bioenergy crops, particularly with respect to light availability as the overstory tree canopy matures. Therefore, we conducted a greenhouse study to determine the effects of shading on switchgrass growth. Four treatments, each with different photosynthetically active radiation (PAR) levels, were investigated inside the greenhouse: control (no shade cloth, 49 % of full sunlight), low (under 36 % shade cloth), medium (under 52 % shade cloth), and heavy shade (under 78 % shade cloth). We determined the effect of shading from March to October 2011 on individually potted, multi-tillered switchgrass transplants cut to a stubble height of 10 cm. In the greenhouse, there was a reduction in tiller number, tiller height, gas exchange rates (photosynthesis and stomatal conductance), leaf area, above- and belowground biomass and light-use efficiency with increasing shade. Total (above- and belowground) biomass in the control measured 374 ± 22 compared to 9 ± 2 g pot?1 under heavy shade (11 % of full sunlight). Corresponding light-use efficiencies were 3.7 ± 0.2 and 1.4 ± 0.2 g MJ?1, respectively. We also compared PAR levels and associated aboveground switchgrass biomass from inside the greenhouse to PAR levels in the inter-row regions of a range of loblolly pine (Pinus taeda L.) stands from across the southeastern United States (U.S.) to estimate when light may limit the growth of intercropped species under field conditions. Results from the light environment of loblolly pine plantations in the field suggest that switchgrass biomass will be significantly reduced at a loblolly pine leaf area index between 1.95 and 2.25, which occurs on average between ages 6 and 8 years across the U.S. Southeast in intensively managed pine plantations. These leaf area indices correspond to a 60–65 % reduction in PAR from open sky.  相似文献   

9.
  • ? Genetic structures of five population pairs each consisting of one natural population and one neighbouring plantation of Pinus roxburghii Sarg. in Nepal were assessed using nuclear (nSSRs) and chloroplast microsatellite loci (cpSSRs).
  • ? The mean number of alleles at nSSRs loci in natural populations was 5.0 compared to 4.93 in plantations while the average observed heterozygosities were the same in both groups (H 0 = 0.50). Most of the alleles were common to all the populations, indicating that the populations correspond to a single genetic entity. Similarly forty-seven haplotypes were observed in natural populations compared to fifty haplotypes in plantations. Mean haplotype diversities of natural populations (0.953) and plantations (0.955) were very similar. Genetic diversity of Pinus roxburghii was relatively high with low or no evidence of inbreeding while genetic differentiation among all populations was very low (about 1%).
  • ? The very low differentiation among natural populations indicates efficient long-distance gene flow among populations resulting in homogeneous genetic structures at least at selectively neutral loci. Even though the harvest and production of seeds and seedlings was largely uncontrolled, genetic structures of most plantations show no signs of reduced variation, inbreeding or other negative effects compromising the adaptedness or adaptability of planted forests.
    •   相似文献   

    10.
    Yellowhorn (Xanthoceras sorbifolium Bunge) is a drought-tolerant tree in the family Sapindaceae that is native to northeastern China. Its remarkably oil-rich seeds are a reliable biodiesel source. An inter simple sequence repeat (ISSR) analysis showed genetic variation among four artificial populations in China: two in Inner Mongolia (IM), one in Liaoning (LN), and one in Shandong (SD). The average percentage of polymorphic loci was 81.25 % for these four populations. The Forest Farm in SD showed the highest number of effective alleles (Ne), Shannon index (I), and expected heterozygosity (He), i.e., 1.598, 0.470, and 0.325, respectively, but the lowest number of alleles (Na) as 1.600. Based on an analysis of molecular variance, 23 % of the total genetic variation was found among populations, and 77 % within populations. A principal coordinate analysis revealed two groups (Group 1: Lindonglinchang, Jianping Agriculture Research Station and Forest Farm; Group 2: Jinjilinchang). Understanding the genetic diversity among artificial yellowhorn populations in China, detected using ISSRs, will be useful for yellowhorn conservation and improvement. Additional artificial and natural populations need to be included in the future for a country-wide perspective.  相似文献   

    11.
    The Portuguese Landrace of Eucalyptus globulus is of unknown origin, with the earliest plantings of this tree species dating back to the early 19th century. In Portugal it is currently a major seed source for plantations and is also used in breeding programs. Eucalyptus globulus is native to south-eastern Australia. The substantial genetic differentiation of chloroplast and nuclear DNA markers between different native geographic races of this species allowed us to uncover the Australian origins of the Portuguese Landrace and to study its genetic diversity. To achieve this, we sequenced a highly polymorphic region of chloroplast DNA from 47 Portuguese Landrace individuals, and genotyped 34 of these using seven nuclear microsatellites. We compared these individuals to those in a database comprising chloroplast DNA sequence profiles from 292 native trees and seven nuclear microsatellites from 372 native trees. The majority of the Portuguese Landrace samples had closest affinities, in both marker systems, to native trees from south-eastern Tasmania, but some had affinities to trees from south-eastern Victoria. The discrepancies in the affinities indicated by chloroplast versus nuclear DNA markers could be explained by inter-race hybridisation after introduction. The genetic diversity in the Portuguese Landrace was less than that found in native E. globulus at the species level, but was similar to the average diversity found in native races of the species. This study demonstrates the power of using independent marker systems to identify the origins and diversity of domesticated populations, by comparison with variation in native stands.  相似文献   

    12.
    Abies nephrolepis Max. is a fir species occurring in Northeast China, the extreme southeast of Russia and Korea. In Korea, A. nephrolepis is one of only three native fir species growing in high, mountainous areas with a disjunct distribution. We investigated genetic variation in A. nephrolepis by examining 24 ISSR polymorphic loci in 248 individuals representing eight natural populations in Korea. The level of intra-population genetic diversity (H e = 0.240) was similar to or slightly lower than that of plants with similar ecological traits and life history. Most of the genetic diversity was allocated among individuals within populations (G ST = 0.082, ΦST = 0.041) and the number of migrants per generation (N m ) was 5.56. Nei’s genetic distances were small (D = 0.027) and unrelated to geographic distances between populations. Implications for the conservation of genetic variation in A. nephrolepis in South Korea were discussed.  相似文献   

    13.
    Pieris japonica is a poisonous tree species that is rarely eaten by herbivorous animals, a fact that could enable the expansion of its distribution range and influence ecosystems into which it encroaches. In a regional-scale study, 300 P. japonica trees from 13 populations were sampled at the University of Tokyo Chichibu Forest, Japan, and were analyzed using 11 microsatellite markers. Genetic differentiation among the populations was low (F ST = 0.022 and G′ ST = 0.024). A plot (30 × 30 m) was established for a fine-scale study, in which all P. japonica trees and saplings were measured and genetically analyzed using the microsatellite markers. Using this approach, we detected 84 genotypes among the 121 P. japonica trees in the plot. A few genotypes had expanded by more than 5 m, indicating that the ability to reproduce asexually could facilitate P. japonica trees to remain in a given location. Autocorrelation analysis showed that the extent of nonrandom spatial genetic structure was approximately 7.0 m, suggesting that seed dispersal was limited. KINGROUP analyses showed that 44 genotype pairs were full siblings, 23 were half-siblings, and 40 were parent-offspring. Only 32 seedlings were observed, of which 15 had reproduced asexually. The number of P. japonica trees has been increasing gradually for more than half a century in our study areas.  相似文献   

    14.
    Big-leaf mahogany (Swietenia macrophylla King, Meliaceae) is the most valuable widely traded timber species from the Neotropics. Mahogany has been severely overexploited throughout its natural range, which stretches from southern Mexico through Central and South America as far south as the Bolivian Amazon. We investigated effects of selective logging on the genetic diversity of a mahogany population in eastern Amazonia. Using eight hypervariable microsatellite loci, we estimated the number of alleles per locus (A), mean expected and observed heterozygosity (He, Ho), the number of distinct multilocus genotypes (Go), and the inbreeding coefficient (f) for pre- and post-logging cohorts (adults and seedlings) collected over identical spatial scales. We found a significant reduction in the number of alleles, observed heterozygosity, and distinct multilocus genotype number in the post- compared to the pre-logging cohort. The loss of genetic diversity is likely to have occurred due to a reduction in the effective population size as a consequence of logging, which leads to the loss of alleles and limits mating possibilities. The results raise concerns about the conservation genetics of logged mahogany populations where a high proportion of adults are removed from the system. We suggest initiatives to promote the maintenance of genetic diversity as an integral part of the production system, allowing genetically sustainable use of this valuable timber resource.  相似文献   

    15.
    With growing concern about maintenance of genetic variation and conservation of gene resources, the question arises on the extent to which a planted population should be considered a resource able to preserve the gene pool of a species. In this study, levels of genetic diversity were assessed in natural and planted populations of Araucaria angustifolia using AFLPs and nuclear microsatellites, in order to assess the usefulness of planted forests in programs of species’ genetic resource conservation. In general, the genetic structure of the plantations was not strongly differentiated from the natural populations. For microsatellites, gene diversity (H) and allelic richness were significantly higher in plantations, while inbreeding was not different between planted and natural populations. For AFLPs, no significant difference was found between groups in the measures of genetic diversity. In the cluster analysis based on microsatellite data, plantations and natural populations from Santa Catarina State were grouped together, suggesting that plantations preserved genetic information very similar to natural populations. The cluster analysis of populations based on AFLP data differentiated plantations from natural populations. This pattern may be a result of genetic hitchhiking of AFLP fragments with genes under selective pressure due to plantations establishment and management. We suggest that the moderate to high level of genetic diversity retained in A. angustifolia populations after the intense fragmentation of the natural forest has the potential to supply plant material with sufficient genetic diversity for the species conservation through the establishment of planted forests. A sustainable management of the extant forest remnants and forestation/reforestation enterprises should additionally attend to trends revealed in previous studies concerning population structure and gene flow.  相似文献   

    16.
    Assessment of genetic variation within and among populations is an essential parameter for the effective conservation of forest genetic resources. In this work, the genetic diversity within and among natural populations of the forest tree species Fraxinus angustifolia Vahl in Greece was studied using selected nuclear and chloroplast microsatellite DNA loci. Eight natural populations of F. angustifolia were identified in different locations of the mainland of Greece, and a total of 230 individuals were studied. High polymorphism was observed within populations, while the genetic differentiation among populations was moderate. Intra-population diversity was correlated with geographical coordinates, but no isolation by distance was observed. Of the three haplotypes identified, only one was dominant. Putative ancestral haplotypes were found at small spatial scales suggesting that population expansions could have originated in the region. This study located in sympatry haplotypes that in other parts of Europe are in allopatry, reinforcing the notion of population expansions from the south of Balkans including Greece. Suggestions for conservation and management of F. angustifolia are also reported.  相似文献   

    17.
  • ? The genetic diversity of nine wild Tunisian Crataegus azarolus var. aronia L. populations from different bioclimates was assessed using RAPD markers.
  • ? Eight selected primers generated a total of 105 bands, 81 of which were polymorphic. Shannon’s index (H′) ranged from 0.222 to 0.278 according to a population with an average of 0.245. The genetic variation within the species (H SP = 0.423) was relatively low. A high differentiation (G ST = 0.421) among populations coupled with a low level of gene flow (N m = 0.472) were observed. The analysis of molecular variance (AMOVA) revealed also significant differentiation among populations (ΦST = 0.371), even at a low scale space. The majority of variation occurred within populations (63.31%). The Mantel test performed on genetic (ΦST) and geographic distance matrices among population pairs did not reveal an isolation by distance.
  • ? Interpretation of Neighbour-joining tree based on Nei’s and Li’s genetic distance among individuals showed distinct population groupings. The UPGMA dendrogram based on ΦST values revealed two population sub-clusters, each including populations from different bioclimates and/or geographic regions.
  • ? The low level of genetic diversity and the high genetic structure of populations resulted from genetic drift caused both by habitat fragmentation and the low size of populations.
  • ? The high differentiation among populations and the similar low level of diversity within populations suggest that in situ conservation should interest all populations. The ex situ conservation should be based on the collection of seeds rather within than among populations because of the maximum of variation was revealed within populations.
    •   相似文献   

    18.
    The most widely distributed tree in North America, quaking aspen (Populus tremuloides, Michx.), reproduces sexually via seed and clonally via suckers. The size of aspen clones varies geographically, generally smaller in the east and large in the arid Intermountain West. In order to describe clone size and genetic structure of aspen in the southern Cascade Mountains, 864 stems from six sites were assayed at 15 isozyme and 6 microsatellite loci. Although isozymes reveal significantly lower levels of allelic richness (P < 0.001) and expected heterozygosity (P < 0.01), differences in genet diversity (isozyme G/N = 0.45, microsatellite G/N = 0.47) and allele frequency variation (isozyme FST = 0.02, microsatellite FST = 0.03) were nonsignificant. While a majority of stands were monoclonal, such stands were small, and the number of clones per stand was positively correlated with stand size (P < 0.0001). High genetic diversity, low genetic differentiation, and a rapid decay of spatial genetic structure consistent with long distance gene flow during seedling recruitment indicate that sexual reproduction is a significant factor contributing to the genetic structure of these populations. These findings further resolve the geographic variation in clonal structure observed in aspen across North America, providing novel information for land management and conservation efforts.  相似文献   

    19.
    应用SSR标记技术,对新疆额尔齐斯河流域河谷分布的苦杨(Populus laurifoli)和欧洲黑杨(Populus nigra)天然居群的遗传多样性和遗传分化进行了研究。结果显示:苦杨和欧洲黑杨的天然居群具有较高的遗传多样性,且苦杨明显高于欧洲黑杨。与苦杨居群相比,欧洲黑杨居群间基因流较高,居群间的遗传分化程度较小,变异主要源于居群内。苦杨和欧洲黑杨居群内的杂合度较高,各个居群的各项遗传参数都要小于物种水平。苦杨和欧洲黑杨均偏离Hardy-Weinberg平衡,表现为杂合子过量的现象。  相似文献   

    20.
    We attempted to evaluate the genetic diversity of long-distance transported pollen flowing over fragmented Pinus densiflora populations during a mating season. A P.?densiflora clonal seed orchard, which was located in a rural area where many fragmented populations exist, was selected for pollen capture. Immigrant pollen captured by three clones having different flowering times was regarded as the pollen flowing over fragmented populations during a mating season. The genetic diversity (H e) values of the immigrant pollen captured by the three clones were high (H e?>?0.894). The correlation of paternity (r p) values of the seeds having immigrant parent generated from the three clones were calculated to be negative. From these parameters, the pollen cloud is considered to have maintained high genetic diversity during the mating season. The genetic composition of the pollen cloud showed slight variation. The pollen captured by different trees (i.e., clonal ramets of the three clones) was significantly different based on analysis of molecular variance. Especially, the pollen pools captured by trees planted in the western side of the orchard were significantly different from the gene pool of the surrounding populations. Factors affecting this differentiation could be that the donors of the pollen transported to the orchard vary with time, as well as nonuniform dispersal of the pollen. From these results, the pollen flowing over fragmented P.?densiflora populations is considered to have high genetic diversity, compensating to some extent for fragmentation.  相似文献   

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