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1.
In the UK, Euphydryas aurinia exists in fragmented habitat patches, and undergoes population fluctuations as a result of a larval parasitoid. Its range is declining in the UK and conservation is thought to require a landscape approach since populations spread over large areas in some years and contract to core breeding patches in others. We examined populations at a range of geographic scales using allozyme electrophoresis to look for evidence of gene flow and differences in genetic diversity among populations. Nationally, our FST value was 0.1542 but between population groups within the suspected colonisation range of the butterfly (ca. 20 km), FST values were not significantly different from zero. Genetic diversity in terms of number of alleles and heterozygosity was reasonably high in natural populations (He=0.267) but low in an introduced, isolated population. We infer that migration between closely spaced subpopulations (in a metapopulation) maintains a high genetic effective population size (large number of individuals in a population that contribute genes to the next generation) which offsets any local reductions in population numbers due to stochastic extinctions or parasitoid effects. We therefore conclude that effective conservation of the species must seek to provide networks of suitable habitat for groups of subpopulations, rather than maintaining habitat for isolated populations.  相似文献   

2.
The endangered fish species Anaecypris hispanica is restricted to eight disjunct populations in the Portuguese Guadiana drainage. The genetic structure of these populations was studied in order to determine levels of genetic variation within and among populations and suggest implications for conservation of the species. Based on five microsatellite loci, the null hypothesis of population homogeneity was tested. Tests for genetic differentiation revealed highly significant differences for pairwise comparisons between all populations, and substantial overall population subdivision (FST=0.112). All sampled populations contained unique alleles. Our findings indicate marked genetic structuring and emphasise limited dispersal ability. The high levels of genetic diversity detected within and among A. hispanica populations suggest, however, that the observed fragmentation and reduction in population size of some populations during the last two decades, has impacted little on levels of genetic variability. Data imply that most A. hispanica populations should be managed as distinct units and that each has a high conservation value containing unique genetic variation. It is argued that geographic patterns of genetic structuring indicate the existence of eight management units.  相似文献   

3.
Trillium camschatcense, a long-lived common woodland herb, has been experiencing intensive habitat fragmentation over the last century in eastern Hokkaido, Japan. We examined the genetic diversity and population genetic structure of 12 fragmented populations with different population sizes using allozyme electrophoresis. The percentage of polymorphic loci and mean number of alleles per locus were positively related to population size, probably due to the stochastic loss of rare alleles (frequency of q<0.1) in small populations. Populations with 350 flowering plants or fewer had lost almost all of their rare alleles. While the heterozygosity and inbreeding coefficient were not related to population size, some small populations showed relatively high inbreeding coefficients. In spite of the low genetic differentiation among overall populations (FST=0.130), local population structuring was recognized between the two geographically discontinuous population groups. Within groups, sufficient historical gene flow was inferred, whereas a low dispersal ability of this species and geographical separation could produce apparent differentiation between groups.  相似文献   

4.
Knowledge of the genetic and demographic consequences of rarity is crucial when evaluating the effects of habitat loss and fragmentation on population viability, and for creating management plans in rare plant species. Reduction in population size and in the number of populations can lead to decreased genetic diversity and increased inbreeding. Genetic diversity is often correlated with fitness and is frequently used to identify populations of greatest conservation concern, or those that may be good candidates for ex situ conservation programs. However, an association between these factors is not always clear, and crossing studies evaluating whether there is phenotypic differentiation among populations in fitness related traits can inform managers of suffering populations or good sources for ex situ materials. Crossing studies can also evaluate the potential for genetic rescue to boost fitness in suffering populations. To address these questions, we conducted two generations of controlled crosses between populations of the extremely rare and fragmented sunflower, Helianthus verticillatus. We measured achene viability, germination, survival, and pollen viability (F1 only) in 176 F1 and 159 F2 families. The populations were differentiated with respect to phenotypic fitness measures with one population having significantly lower achene viability and germination. Also, the potential for genetic rescue was observed as gene flow into the less fit population resulted in higher fitness measures in both the F1 and F2. Results are discussed with respect to the importance of combining genetic marker data with crosses and the implications for conservation in disjunct populations of rare species.  相似文献   

5.
Microsatellite DNA polymorphisms were screened in seven populations of the largest Neotropical predator, the Black caiman Melanosuchus niger (n = 169), originating from Brazil, French Guiana and Ecuador. Eight loci were used, for a total of 62 alleles. The Ecuadorian population had the lowest number of alleles, heterozygosity and gene diversity; populations of the Guianas region exhibited intermediate diversities; highest values were recorded in the two populations of the Amazon and Rio Negro. During the last century Melanosuchus populations have been reduced to 1-10% of their initial levels because of hunting pressure, but no strong loss of genetic diversity was observed. Both the inter-locus g-test and the Pk distribution suggested no recent important recovery and/or expansion of current populations. On a global scale, the inter-population variation of alleles indicated strong differentiation (FST = 0.137).Populations were significantly isolated from each other, with rather limited gene flow; however, these gene flow levels are sufficiently high for recolonization processes to effectively act at regional scales. In French Guiana, genetic structuring is observed between populations of two geographically close but ecologically distinct habitats, an estuary and a swamp. Similar divergence is observed in Brazil between geographically proximate “black water” and “white water” populations. As a consequence, the conservation strategy of the Black caiman should include adequate ecosystem management, with strong attention to preservation of habitat integrity. Distribution of genetic diversity suggests that current populations originated from the central Amazonian region. Dispersal of the species may thus have been deeply influenced by major climatic changes during the Holocene/Pleistocene period, when the Amazonian hydrographic networks were altered. Major ecological changes such as glaciations, marine transgressions and a hypothesized presence of an Amazonian Lake could have resulted in extension of Black caiman habitats followed by isolation.  相似文献   

6.
Impatiens noli-tangere is scarce in the UK and probably only native to the Lake District and Wales. It is the sole food plant for the endangered moth Eustroma reticulatum. Significant annual fluctuations in the size of I. noli-tangere populations endanger the continued presence of E. reticulatum in the UK. In this study, variation in population size was monitored across native populations of I. noli-tangere in the English Lake District and Wales. In 1998, there was a crash in the population size of all metapopulations in the Lake District but not of those found in Wales. A molecular survey of the genetic affinities of samples in 1999 from both regions and a reference population from Switzerland was performed using AFLP and ISSR analyses. The consensus UPGMA dendrogram and a PCO scatter plot revealed clear differentiation between the populations of I. noli-tangere in Wales and those in the Lake District. Most of the genetic variation in the UK (HT=0.064) was partitioned between (GST=0.455) rather than within (HS=0.034) regions, inferring little gene flow occurs between regions. There was similar bias towards differentiation between metapopulations in Wales, again consistent with low levels of interpopulation gene flow. This contrasts with far lower levels of differentiation in the Lake District which suggests modest rates of gene flow may occur between populations. It is concluded that in the event of local extinction of sites or populations, reintroductions should be restricted to samples collected from the same region. We then surveyed climatic variables to identify those most likely to cause local extinctions. Climatic correlates of population size were sought from two Lake District metapopulations situated close to a meteorological station. A combination of three climatic variables common to both sites explained 81-84% of the variation in plant number between 1990 and 2001. Projected trends for these climatic variables were used in a Monte Carlo simulation which suggested an increased risk of I. noli-tangere population crashes by 2050 at Coniston Water, but not at Derwentwater. Implications of these findings for practical conservation strategies are explored.  相似文献   

7.
This study investigates the contribution of the traditional land-use system “sheep herding” (transhumance) to the gene flow among populations. Three sheep trails with altogether 12 calcareous grassland sites were chosen for the analysis of the tussock grass Bromus erectus, which is known to be the species with the highest rate of dispersal via sheep fleece. Each trail links two to four isolated populations. Allozymes were chosen as genetic markers. Six loci were used, five of which were polymorphic. While genetic variability within populations was found to be quite high (averaged h=0.352), only little between-population differentiation was measured (GST=5.5%). Despite this, the UPGMA-dendrogram of Nei's genetic distance shows genetic similarity relations largely congruent with the sheep herding trails. However, a (more) detailed comparison reveals several differences between genetic patterns and trail system. Hence, additional factors other than dispersal by sheep are regarded as being responsible for exchange of genes, and sheep herding is considered to have only minor importance for the genetic patterns of the investigated species. The comparison of Bromus erectus to species with the same life history traits (i.e. pollination by wind, a perennial life cycle, and autopolyploid constitution) shows similar values, thus providing further evidence for the relatively small contribution of dispersal via sheep fleece.  相似文献   

8.
Populations of many orchids, especially terrestrial species, have been rapidly decreasing due to mass collection by plant sellers and enthusiasts. Given the presumably negative demographic and genetic consequences, such anthropogenic activity should be taken into consideration for predicting ecological and evolutionary dynamics and for planning conservation strategies. To determine how recent human disturbance alters spatial demographic and population genetic processes, populations of the terrestrial orchid Cymbidium goeringii located in South Korea were examined to quantify the spatial distributions of individuals and genotypes with respect to three levels of disturbance: “disturbed” (four populations), “putatively disturbed” (two), and “undisturbed” (two). Undisturbed and putatively disturbed populations were found to possess significantly positive spatial clustering of individuals over a range of spatial scales. In contrast, disturbed populations exhibited little or no spatial aggregation, consistent with the selective removal of plants by collectors from higher density areas within these populations. Although overall genetic differentiation among populations was moderate and significant (FST = 0.082), levels of genetic diversity within populations were similar despite the different disturbance histories (mean He = 0.257-0.324). Spatial genetic autocorrelation analyses revealed that the undisturbed populations exhibited significant declines in kinship (Fij) with distance, that mean kinship at interplant distances of ?4-6 m was significantly greater than zero and between plants ?0.5 m apart was in the range expected for first cousins to half-sibs. In contrast, only one putatively disturbed and one disturbed population exhibited significant declines in kinship with distance. These differences between disturbed versus putatively disturbed and undisturbed populations in the spatial distribution of individuals and genetic variation likely reflect the consequences of mass collections. Since these differences (and reduced population density) have important implications for future ecological and evolutionary trajectories, conservation managers of endangered terrestrial orchids may want to analyze the spatial distribution of individuals and their genotypes to infer whether a population with few individuals represents a natural state or the likely outcome of mass collection.  相似文献   

9.
Tropical rainforests are becoming increasingly fragmented and understanding the genetic consequences of fragmentation is crucial for conservation of their flora and fauna. We examined populations of the toad Rhinella ornata, a species endemic to Atlantic Coastal Forest in Brazil, and compared genetic diversity among small and medium forest fragments that were either isolated or connected to large forest areas by corridors. Genetic differentiation, as measured by FST, was not related to geographic distance among study sites and the size of the fragments did not significantly alter patterns of genetic connectivity. However, population genetic diversity was positively related to fragment size, thus haplotype diversity was lowest in the smallest fragments, likely due to decreases in population sizes. Spatial analyses of genetic discontinuities among groups of populations showed a higher proportion of barriers to gene flow among small and medium fragments than between populations in continuous forest. Our results underscore that even species with relatively high dispersal capacities may, over time, suffer the negative genetic effects of fragmentation, possibly leading to reduced fitness of population and cases of localized extinction.  相似文献   

10.
Species that are rare when first described present a practical management problem because it may be unclear whether the taxon is in the final stages of an anthropogenic decline, or is naturally uncommon, and each scenario dictates a distinct approach to management. We analysed mitochondrial and microsatellite DNA data with population genetic and phylogeographic tools to distinguish between these possibilities in a rare lizard from southern New Zealand. Grand skinks, Oligosoma grande, are large rock-dwelling lizards that have a fragmented distribution consisting of a western and eastern cluster of populations separated by ca. 120 km. This distribution could result from human disturbance, pre-human climatic and vegetation changes, or both. All populations were highly genetically structured (overall FST 0.171, RST 0.235), indicating that populations were demographically independent and skinks are unlikely to expand their range without human intervention. In addition, the current fragmented distribution is likely to have both historical and recent anthropogenic elements. Two eastern populations showed evidence of being historically large (high θ mtDNA genetic diversity), although they are now small, supporting anecdotal data that grand skinks have declined in historical times. However, eastern and western populations were reciprocally monophyletic for mtDNA lineages, suggesting long independent evolutionary histories that predate the arrival of humans in New Zealand. Eastern and western populations fulfil many criteria to be considered as evolutionarily significant units, but such a classification must be balanced against addressing more immediate threats to the species’ survival, such as introduced predators.  相似文献   

11.
Levels of genetic variation and intrapopulation genetic structures of Leontice microrhyncha S. Moore (Berberidaceae) were assessed for six populations in South Korea, representing the southern most range of a species found in Northeast China and the Korean peninsula. Detected genetic diversity (Hes) was very low (0.024) and FIS values showed large heterozygote deficiencies. The small percentage of polymorphic loci and numbers of alleles per locus suggest that L. microrhyncha has a history of severe or long-lasting population bottlenecks that have eroded genetic diversity. This study suggests that the Korean population appears to consist of two historically isolated and independently evolving populations. It seems likely that these groups have been isolated and unstable for a significant period of time. However, the effects of recent habitat fragmentation on the historically disjunct and fragmented population system found in L. microrhyncha were not those predicted from the lack of significant relationships between population-level patterns of genetic variation and population sizes. Most non-unique genotypes were shared by most individuals and the lower level of diversity, high levels of inbreeding and population differentiation as well as high rate of seed production indicated that this species is autogamous and self-compatible and probably largely selfing. Therefore, to preserve extant genetic variation, all populations must be protected across the small geographic range of the species to retain both allelic and genotypic diversity.  相似文献   

12.
The red kite (Milvus milvus) occurs in a relatively small area in the southwestern Palearctic region, with population strongholds in Central Europe. Following strong human persecutions at the beginning of the 20th century, populations have receded, particularly in peripheral areas and islands. In order to describe and compare levels of genetic diversity and phylogeographic patterns throughout its entire distribution in Europe, sequence variation of a 357 bps part of the mitochondrial DNA control region was assessed in eight populations and 105 individuals. Overall, results indicate that population declines have affected red kite mtDNA variation. We found low levels of genetic diversity (values of nucleotide diversity ranging from 0 in Majorca island to 0.0062 in Central Europe), with only 10 distinct haplotypes, separated by low levels of genetic divergence (mean sequence divergence = 0.75%). Highest haplotype and nucleotide diversities match with demographic expectations, and were found in Central European and Central Spanish samples, where present strongholds occur, and lowest values in the declining southern Spanish and insular samples. Φst estimates indicated moderate gene flow between populations. Phylogeographic patterns and mismatch distributions analyses suggest central European regions may have been colonized from southern glacial refugia (in the Italian or Iberian peninsulas). Interspecific phylogenetic comparisons and divergence date estimates indicated the genetic split between the red kite and its closely related species, the black kite (Milvus migrans), might be relatively recent. The low level of genetic variation found in the red kite mitochondrial control region, compared to the black kite, is likely the result of relatively recent divergence (associated with founder events), successive bottlenecks and small population sizes. As there are several ongoing projects aimed at reinforcing populations in countries such as the United Kingdom, Italy or Spain, our results may prove useful for the genetic management of the species.  相似文献   

13.
Genetic diversity of 70 populations of niger (Guizotia abyssinica) representing all its growing regions in Ethiopia was investigated using random amplified polymorphic DNA (RAPD) to reveal the extent of its populations genetic diversity. Ninety-seven percent of the loci studied was revealed to be polymorphic for the whole data set. The within population diversity estimated by Shannon diversity index and Nei gene diversity estimates was revealed to be 0.395 and 0.158, respectively. The extent of genetic variation of populations from major niger producing regions was significantly lower than that of populations from other regions; however, it is distributed regardless of altitude of growth. Genetic differentiation between populations was estimated with Shannon index as G′ ST (0.432), Nei’s G ST (0.242) and AMOVA based F ST (0.350) and appears to be equivalent to the average values calculated from various RAPD based studies on outcrossing species. Higher proportion of the variation detected by AMOVA resided within populations (64.58%) relative to the amount of variation among populations (35.42%). UPGMA cluster analysis showed that most of the populations were clustered according to their region of origin. However, some populations were genetically distant from the majority and seem to have unique genetic properties. It is concluded that the crop has a wide genetic basis that may be used for the improvement of the species through conventional breeding and/or marker assisted selection. Collection of germplasm from areas not yet covered and/or underrepresented is the opportunity to broaden the genetic basis of genebank collection.  相似文献   

14.
Tetraena mongolica Maxim, is a critically endangered and endemic species of westem Inner Mongolia in China. Genetic variability within and among eight extant populations of this species was assessed using ISSR PCR (13 primers). We expected a low genetic diversity level, but our results revealed an intermediate level of intraspecific genetic diversity, probably resulting from this species being in a refuge during the last glaciation (at population level: P=48.1%, Ae=1.305, HE=0.177 and Hpop=0.264; at species level: P=63.3%, A=1.368, HT=0.213 and Hsp=0.324). A low level of genetic differentiation among populations was detected based on Nei's genetic diversity analysis (16.91%), Shannon's diversity index (18.83%) and AMOVA (15.2%). Populations shared high levels of genetic identity (I=0.9516±0.013). The extensive gene flow was a plausible reason for the low genetic differentiation.  相似文献   

15.
Clianthus is an acutely threatened, bird-pollinated genus endemic to New Zealand, represented in the wild by only one population of C. puniceus and 11 populations of C. maximus, each with very few individuals (typically <10 per population). A limited number of named Clianthus cultivars of indeterminate origin are commonly grown as ornamentals. Genomic DNA from individual Clianthus plants was extracted for genetic diversity analysis using a range of molecular markers, including amplified fragment length polymorphism (AFLP). Data were analysed by the unweighted pair-group method with arithmetic averaging (UPGMA), the generation of Neighbor-Joining trees, and analyses of molecular variance (AMOVA). Genetic distance between wild populations of C. maximus was highly correlated with geographical distance between populations. Sequencing of intron 2 of a putative partial homologue of the floral meristem identity gene LEAFY (CmLFY) revealed a 7 bp deletion that was exhibited homozygously in the more northern populations of C. maximus, and in all individuals tested from the sole population of C. puniceus. This deletion was not exhibited in more southern populations of C. maximus. Further, one geographically intermediate population contained some plants that were heterozygous for the deletion. Parallel analyses of cultivated Clianthus genotypes, more than half of which were also homozygous for the 7 bp deletion, showed that these were not representative of the broad, but threatened, diversity remaining in the wild. It is argued that wild populations of C. maximus are unlikely to have arisen from the escape of plants from cultivation. Conservation effort should focus on the protection and study of the extant plants in these wild populations, rather than on the introduction of disturbance regimes to uncover potential seed banks.  相似文献   

16.
Angiopteris chauliodonta, endemic to remote Pitcairn Island, was until recently thought to occur in only two small populations. Survey work carried out on the island in 1997 increased the number of populations to six, but as the total number of plants found was 774 (of which only 147 were mature adults) the species should be regarded as critically endangered. The species occurred in native fern-rich Homalium taypau and Metrosideros collina forest that was in many areas heavily invaded by Syzygium jambos and Lantana camara. RAPD analysis identified related populations but there was no correlation between genetic and geographical distance. The highest levels of genetic diversity was partitioned within populations (HS=0.154; DST=0.116), although the larger populations were not necessarily the most diverse. Threats are primarily due to forest clearance, invasive species and erosion. Conservation management for this species will be through reinforcement of existing populations to maximise their genetic diversity and translocation of new populations to suitable habitats.  相似文献   

17.
Randomized lysimeters in an oil-contaminated field contained the following treatments: (1) Galega orientalis seeds inoculated with Rhizobium galegae HAMBI 540, (2) bioaugmentation with Pseudomonas putida PaW85, and (3) R. galegae -inoculated G. orientalis seeds plus bioaugmentation with P. putida PaW85. The bacterial abundance and diversity were analysed in composite samples after one growing season. A total of 208 m-toluate tolerating bacteria were isolated and screened with m-toluate tolerance and utilization tests, and the catechol test. Seventy-nine isolates were characterized with (GTG)5-PCR genomic fingerprinting and 16S rRNA gene PCR-RFLP ribotyping. Only 10% of the isolated strains were able to degrade m-toluate. Most of the m-toluate utilizing bacteria were catechol positive indicating the existence of a TOL plasmid. Rhizosphere effect of G. orientalis was manifested in oil-contaminated soil. G. orientalis and Pseudomonas bioaugmentation increased the amount of bacteria in oil-contaminated soil. G. orientalis especially together with Pseudomonas bioaugmentation increased the numbers of m-toluate utilizing and catechol positive bacteria in the soil samples indicating an increase in degradation potential. The rhizosphere of G. orientalis increased also the diversity of bacteria. More ribotypes were found in soils treated with G. orientalis and P. putida PaW85 compared to the untreated soil, but the diversity of the m-toluate utilizing bacteria did not significantly increase.  相似文献   

18.
The ability of a taxon to maintain adaptive flexibility in a stochastic environment is a function of the genetic diversity within the population. In small, fragmented populations, genetic variation can become depleted more quickly than in larger, more contiguous populations. Characterizing the patterns of genetic variation and differentiation associated with these processes is an important step in establishing conservation priorities. The Amargosa vole, Microtus californicus scirpensis, is an endangered rodent persisting in the small, fragmented marsh complex surrounding the Amargosa River near Death Valley, California. This naturally patchy system has existed since the end of the Pleistocene (approximately 10,000 y.b.p.), however, fragmentation has been exacerbated by recent anthropogenic changes. For this study, I used five nuclear microsatellite loci and the cytochrome-b region of the mitochondrial genome to quantify levels of genetic variation, population substructure, and patterns of gene flow in M.c. scirpensis. These data were compared to a broadly distributed subspecies, Microtus californicus sanctidiegi. Overall levels of nuclear genetic variation were significantly lower in M.c. scirpensis, whether measured in terms of diversity or heterozygosity, compared to more broadly distributed conspecifics. Moreover, only two haplotypes were recovered from the mitochondrial data with over 90% of the observed haplotypes being identical. Despite low genetic diversity, significant genetic subdivision among M.c. scirpensis populations was detected using both pairwise FST and Bayesian clustering methods. Furthermore, isolation by distance analyses reveal that an important landscape feature, ephemeral tributaries, is critical for dispersal among population clusters. Recommendations for conservation management are presented.  相似文献   

19.
Microsatellites are one of the preferred marker types to estimate the level of genetic diversity and subdivision in natural populations of endangered species. Many studies thereby attempted to identify genetically defined management units for conservation by applying a variety of genetic clustering methods. It is not clear, however, whether genetic clusters inferred from neutral molecular markers reflect differences in fitness or adaptation. In this study, I conducted a common garden experiment on the endangered European tree frog (Hyla arborea) to clarify whether fitness-related traits of larval development differed between three genetic groups defined by Bayesian clustering analysis. I reared larvae under semi-natural conditions and measured growth and developmental rates as well as survival at five larval stages from eclosion to completion of metamorphosis. Nested general and generalized linear models showed significant cluster differences for several variables in terms of smaller growth rates and body sizes at early larval stages. These differences were, however, probably not linked to adaptive divergence among clusters but rather to neutral genetic processes in the breeding sites of one cluster, which were spatially isolated and subject of recent bottlenecks. Hence, a genetic load effect (e.g. inbreeding depression) may have acted on the populations of this particular cluster. I advise studies aiming to define management units for conservation to not only use genetic clustering methods but to complement their findings with experimental approaches on fitness-related traits.  相似文献   

20.
In parasite-host dynamics, parasites exert frequency-dependent selection on their hosts by favouring rare alleles that may confer resistance against infection. Therefore host populations that suffer strong parasite stress should maintain higher levels of genetic variability. We studied the Lumbricus terrestris-Monocystis sp. host-parasite system at a microgeographical scale. Using three polymorphic microsatellite loci on one large earthworm population sampled at 26 different sites (281 genotypes), we tested the relationship between parasite load and genetic variation in natural samples of the common earthworm L. terrestris. Our analysis yielded the following: (1) parasite load varied significantly across sites in this population; (2) there was no consistent evidence for heterozygote deficiency (observed heterozygosities ranged between 0.74 and 0.87), indicating a low level of inbreeding; (3) there was no significant genetic structuring among sample sites; (4) we could not identify a significant association between parasite load and population genetic diversity; (5) there was considerable population differentiation (15.17%) between our German samples and a Canadian L. terrestris reference population. Our study provides insight into the population genetics of one of the most economically important soil organisms on a microgeographic scale.  相似文献   

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