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黄萎病是棉花生产的主要病害,克隆抗病基因是培育棉花抗黄萎病品种的关键。本文根据前期的定位结果,结合棉花基因组测序信息,提取定位区段内基因组序列,预测获得63个基因。Gene Ontology分析表明63个基因参加多种生物进程,其中6个基因参与植物抗逆进程。根据Gene Ontology分析和前人研究结果,选择15个基因进行序列分析。启动子序列分析表明启动子区域包含各种抗逆的调控元件,其中6个基因包含了W-box元件。对海7124和苏棉8号棉花幼苗进行黄萎病菌处理,取病菌处理后不同时期的根,选择14个基因进行表达分析,结果表明在黄萎病菌处理后,有8个基因表达出现变化,其中在海7124和苏棉8号之间表达差异最大的基因是跨膜蛋白(Transmembrane protein 214-a isoform 1)、细胞色素P450(Cytochrome p450)和Udp-糖基转移酶UGT89A2(Udp-glycosyl transferase 89a2-like)基因。本研究为抗病基因克隆提供了候选基因。 相似文献
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棉花黄萎病是制约棉花产业健康发展的一种重要病害,在生产上未发现有效的根治办法,使用现代基因工程技术,从基因库中挖掘抗黄萎病相关基因,为棉花抗黄萎病育种工作的提供理论基础。本研究根据在GenBank中检索到抗黄萎病基因SDAHP(GU479467,1,3-脱氧-阿拉伯庚酮糖-7-磷酸合成酶),从陆地棉基因组数据库中检索到3个同源基因(NM_016893351.1,XM_016849738.1和XM_0168151150.1),根据3个同源基因核苷酸序列设计引物,以陆地棉cDNA为模板进行克隆,获得3个目的基因,依次命名为GhDAHP-1、GhDAHP-2和GhDAHP-3。利用ProtParam和Prot Scale等在线软件对目的基因进行生物信息学分析;RT-PCR分析黄萎病菌诱导后目的基因在陆地棉叶片中的表达量。结果表明:GhDAHP-1序列全长1983 bp,氨基酸总数为539,分子质量约59.45378 kD,理论等电点pI为8.7;GhDAHP-2序列全长1832 bp,氨基酸总数516,分子质量约57.02998 kD,理论等电点pI为7.68;GhDAHP-3序列全长1652 bp,氨基酸总数517,分子质量约56.95491 kD,理论等电点pI为8.52。系统进化树分析,GhDAHP与雷蒙德氏棉(Gossypium raimindii)、木本棉(Gossypium arboreum)的亲缘关系最近。棉花叶片在黄萎病菌的处理下,GhDAHP基因表达量呈现先升高后降低的趋势,推测受到黄萎病诱导后,GhDAHP基因可能参与了黄萎病菌侵染的防卫过程。 相似文献
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棉花RAV基因家族的全基因组分析 总被引：1，自引：1，他引：0
在二倍体棉花D5基因组(Gossypium raimondii Ulb.)数据库中鉴定出10个RAV基因,分布于4、5、8、9、13号染色体;在二倍体棉花A2基因组(Gossypium arboreum L.)数据库中鉴定出10个RAV基因,与棉花D5基因组的R AV成员的数量和序列具有一一对应的同源关系,推测棉花A、D组的祖先种中可能存在10个RAV基因。对植物R AV蛋白序列做系统发育分析,将R AV成员分为4个组;发现棉花R AV基因可能参与了棉属所特有的基因组多倍化事件的证据。对N CBI中陆地棉(Gssypium hirsutum L.)EST、Unigene数据库做比对统计,得到陆地棉不同组织中R AV基因表达情况;对陆地棉受黄萎病菌胁迫后的荧光定量检测,发现棉花RAV基因与棉花响应黄萎病菌的胁迫相关。 相似文献
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Creation of a New Resistant Germplasm to Verticillium Wilt by Distant Hybridization in Upland Cotton 总被引：1，自引：1，他引：0
To create new germplasm lines resistant to Verticillium wilt in upland cotton, 65 distant hybridization germplasm lines (DHGLs) in upland cotton genetic background were cultivated by interspecific hybridization between Gossypium hirsutum and wild species including G. anomalum, G. armourianum, G. aridum, G. raimondii, G. mustelinum, interspecific F1 backcrossing with G. hirsutum for four generations, and selfing for four generations, followed by a conventional breeding program. The results of agronomic trait identification during 2011-2012 indicated that average plant heights of DHGLs were closely similar to commercial cultivars of upland cotton, while average fruit branches, fruit nodes, bolls of DHGLs individual plant were lower than those in commercial cultivars of upland cotton. Average single boll weight and lint percentage of DHGLs were lower than commercial cultivars of upland cotton. Fiber length, strength, fineness and maturity of DHGLs were reasonably collocated. Fiber of most lines was suitable for spinning extra high count yarn, but the main fiber quality indices of commercial cultivars of upland cotton were not well coordinated. Identification of resistance to Verticillium wilt in defoliation disease nursery during 2012-2013 indicated that five DHGLs resistant to Verticillium wilt . Suyuan 040, Suyuan 045 and Suyuan 061 were highly resistant to Verticillium wilt with a disease index of 8.33, 4.35 and 7.79, respectively. Suyuan 030 and Suyuan 034 were resistant to Verticillium wilt with a disease index of 12.35 and 13.70, respectively. The genetic relationship of new germplasm lines resistant to Verticillium wilt were traced and showed that Suyuan 040 and Suyuan 045 were DHGLs of G. raimondii, Suyuan 061 was DHGL of G.mustelinum, Suyuan 030 and Suyuan 034 were DHGLs of G. aridum. 相似文献
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利用染色体片段代换系定位棉花抗黄萎病QTL 总被引：3，自引：3，他引：0
通过陆地棉与海岛棉杂交并与陆地棉回交,获得1个染色体片段代换系苏VR043,抗江苏非落叶型黄萎病菌系BP2。分子检测表明,苏VR043兼有陆地棉苏棉8号的遗传背景和海7124的D4染色体片段。以苏VR043和苏棉8号为亲本构建包含176个单株的F2群体,通过标记分析和F2:3家系抗病鉴定,发现抗病性状与标记NAU3392连锁,p值为2.3×10-12。根据棉花D组染色体测序结果,参照置换区段的基因组序列,合成92对SSR引物;PCR扩增分析发现,有5对引物在苏棉8号和苏VR043之间表现多态性,并将抗病主效QTL定位在标记ZHX32和NAU3392之间,标记间遗传距离为3.2 c M,QTL解释表型变异64.8%。同时参照棉花D组测序结果,提取对应的置换区段序列,预测包含63个基因,基因聚类分析表明7个基因参与抗逆反应,其中1个基因与抗病相关。 相似文献
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黄萎病是一种土传真菌维管束病害,严重影响棉花产量和品质。挖掘抗黄萎病相关基因对于棉花抗黄萎病遗传改良具有重要意义。本研究通过筛选黄萎病菌胁迫下的海岛棉全长cDNA文库和陆地棉SSH文库,获得一个与黄萎病菌胁迫相关的基因,命名为GbVWR。生物信息学特征和基因表达分析表明,GbVWR基因全长520 bp,开放读码框198 bp,编码65个氨基酸残基组成的蛋白,理论等电点为5.32,包含一个信号肽和一个跨膜区,是一种分泌蛋白。GbVWR基因可以诱导表达7 kD的蛋白。在GbVWR基因起始密码子上游1500 bp的核苷酸序列区间预测到真菌激发子响应、激素响应、伤口响应及黄酮生物合成基因调节等应答元件。GbVWR基因在海岛棉根中表达最高,茎中其次,叶中最低。受黄萎病菌诱导后,GbVWR基因在接菌后2 h可对黄萎病菌作出应答反应。此外SA、ET和GA均可显著诱导GbVWR基因的表达。初步推断GbVWR是海岛棉抵御黄萎病菌过程中一个新的功能基因,通过参与多种激素信号途径发挥功能 相似文献
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Zhang Chuanyi Xu Yanchao Cai Xiaoyan Wang Xingxing Hou Yuqing Wang Yuhong Wang Kunbo Liu Fang Zhou Zhongli 《棉花学报》2019,31(6):482-492
[Objective] Glutathione reductase (GR) gene family is involved in biological processes such as plant growth and abiotic stress response, but its characteristics and functions in cotton have not been known yet. This study aims to explore the role of GR genes in cotton genome evolution and abiotic stress response through the whole genome identification and characterization of GR genes, thus providing a theoretical basis for future studies on the roles of the GR genes in enhancing abiotic stress tolerance in cotton. [Method] The GR genes in Gossypium hirsutum, G. barbadense, G. raimondii and G. arboreum were all identified using bioinformatics software. The physicochemical properties, sequence characteristics, chromosomal location, phylogeny and expression patterns were analyzed. [Result] A total of 18 GR genes were identified. The number of GR genes in G. hirsutum, G. barbadense, G. raimondii and G. arboreum was 6, 6, 3 and 3, respectively. Phylogenetic analysis revealed that GR genes were divided into two sub-groups. The genes in the same subgroup exhibited similar gene structure in relation to exon-intron ratios. The ratios of the non-synonymous mutations (Ka) and homologous mutations (Ks) were all less than 1, indicating that the GR genes underwent strong purification selection during their evolution process. The analysis of the expression patterns of GR genes in upland cotton indicated that all the GR genes responded actively to the stress environment; but under different abiotic stresses, the gene expression patterns were significantly different. [Conclusion] The study explored the evolution and function of the GR gene family in the four cotton genomes, providing a theoretical basis for future studies of cotton GR genes. 相似文献
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用相互嫁接和定量PCR分析棉花对棉花黄萎病的抗性 总被引：2，自引：0，他引：2
为了研究棉花对棉花黄萎病的抗性机制, 本文选用对棉花黄萎病表现抗病的海岛棉(Gossypium barbadense)材料海7124和Pima 90及感病的陆地棉(G. hirsutum)材料冀棉11, 通过相互嫁接的方法构建试验系统, 用棉花黄萎菌对其人工接种, 利用Real-time quantitative PCR (qPCR)技术分析其在感病和抗病棉花中侵染的差别。相互嫁接试验中感/抗和抗/感组合的病情指数介于感/感和抗/抗对照之间, 且相互嫁接棉株各个部位的IC值(侵染系数)也多介于其对照相应部位之间; 并且病情指数与不同部位IC值显著相关, 说明棉花黄萎菌可以通过接口在抗-感之间扩展。感/抗嫁接组合试验说明抗病材料的茎基部在抑制病原菌扩展中起重要的作用, 而抗/感类型试验说明抗病材料接口以上部分也具有抑制病原菌增殖的作用。总之, 抗病海岛棉无论作为砧木还是接穗, 都能有效抑制病原菌的扩展, 说明抗病海岛棉对棉花黄萎菌具全株抗性, 但茎基部在抑制病原菌扩展中起重要的作用; 同样, 感/抗和抗/感组合试验也说明感病材料的各个部位均不能抑制病原菌的定殖和扩展。 相似文献
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不同抗性品种对棉花黄萎病菌致病力的影响 总被引：1，自引：0，他引：1
以1个海岛棉品种和15个陆地棉品种为分离寄主,采取单孢分离,共分离出67个黄萎病菌系。以抗性差异较大的海岛棉品种Pima90-53和陆地棉品种冀棉20、邯208和中棉所8号为鉴别寄主,采用苗期营养钵定量注菌液法对分离菌系进行了致病力鉴定。结果表明,同一地块田间不同品种所分离菌系的致病力类型并非单一类型,而是由致病力连续变化的多种致病力菌系类型组成;由不同品种分离出的菌系致病力存在差异,寄主品种的抗性与分离的黄萎病菌系的致病力无关,但不同基因型品种可能会影响不同致病力菌落的消长。 相似文献
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Screening and Positioning of Three Chromosome-specific BAC Clones in Gossypium raimondii 总被引：1，自引：1，他引：0
QIN Qin LIU Fang GAN Yi-Mei WANG Chun-Ying WANG Yu-Hong CAI Xiao-Yan WANG Kun-Bo 《棉花学报》2013,25(4):323-328
We screened a bacterial artificial chromosome(BAC) library of Gossypium barbadense acc. Pima 90-53 to identify chromosome-specific BAC clones. Using BAC-fluorescence in situ hybridization technology, we obtained three BAC clones specific to chromosome D501, D502, and D510 of Gossypium raimondii, which could be used as cytological markers for those three chromosomes. Comparative mapping of these three BACs between G. barbadense and in G. raimondii showed that these three BAC clones could also be used to identify chromosomes Db01, Db02, and Db10 in G. barbadense. The position of the BAC clone 280G06 on chromosome 10 did not show colinearity between G. barbadense and G. raimondii, possibly because of chromosomal rearrangement. 相似文献
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[Objective] Thaumatin-like proteins (TLPs) are important pathogenesis-related proteins that function during disease defense-related responses, participating in the defense reactions triggered by several kinds of pathogen infections. A genome-wide analysis of TLP genes could help increase our understanding of their molecular mechanism in response to Verticillium dahliae infections in cotton (Gossypium hirsutum L.). [Method] The TLP family members in the genomes of the G. hirsutum L. were identified and expression analyses of TLP genes in response to Verticillium dahliae inoculation were conducted using bioinformatics and real-time fluorescent quantitative PCR methods, respectively. [Result] In total, 88 TLP genes were identified in G. hirsutum. These TLPs were classified into 10 groups based on their amino acid sequences and a phylogenetic analysis. A gene structure analysis revealed that the number of exons ranges from 1 to 5, and the number of introns ranges from 0 to 4. TLP genes in the same group shared similar structures. Additionally, most TLP proteins contain five motifs that are arranged in the following order: 5, 4, 2, 3 and 1. In total, 87 TLP genes are distributed on 20 of the 26 chromosomes, and 42 and 45 TLP genes are distributed in the A and D subgroups, respectively. The real-time fluorescent quantitative PCR analysis showed that the expression levels of six candidate TLP genes were induced in both tolerant cotton cultivar GZ-1 and susceptible cotton cultivar 86-1, and showed a higher expression in the former. [Conclusion] These results provide a foundation for future studies of the functions and regulatory mechanisms of TLP family genes. 相似文献
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棉花黄萎病(Verticillium dahliae)是一种土传性真菌维管束病害,严重影响棉花的生产。本研究通过转录组数据分析筛选出一个与棉花黄萎病相关的氨基酸转运蛋白GhAAT基因,该基因在棉花根部响应黄萎病菌诱导表达。利用病毒诱导的基因沉默(virus-induced gene silencing, VIGS)技术研究其在棉花抗黄萎病中的功能。结果显示将该基因在棉花TM-1的叶片和根部沉默后,棉花对黄萎病抗性减弱,证明GhAAT基因参与调控了棉花抗黄萎病功能。发掘棉花抗黄萎病菌重要调控基因并揭示其分子机制对培育棉花抗病品种具有重要意义。 相似文献
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陆地棉抗黄萎病种质创新与抗病基因挖掘 总被引：3，自引：1，他引：2
抗病种质在抗病育种中的地位不可替代。远缘杂交材料创新是陆地棉黄萎病抗性种质创制的重要基础;基因工程提供了创造变异的新技术,但由于抗病机制复杂,导入一、两个主基因的效果还不明显;采用分子生物学技术揭示棉花对黄萎病的抗性机制,发掘棉花抗病基因和病程相关基因,有助于剖析棉花-黄萎病菌互作机制。本文概述了陆地棉抗黄萎病种质创制、抗病品种选育的成就,介绍了棉花黄萎病抗性机理与功能基因发掘等方面的最新进展,为抗病分子设计育种提供理论支持。 相似文献
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[Objective] The MAPKKK gene family plays an important regulating role in response to multiple abiotic stresses and the development of plant. This study aims to identify MAPKKK genes of Gossypium raimondii and analyze their functions. [Method] In this study, based on G. raimondii genome database and bioinformatics method, G. raimondii MAPKKK family genes were identified and analyzed. Using the MEGA5, GSDS and Mapchart program, the phylogenetic tree, gene structure and chromosomes location analyses were accomplished. Based on the existing microarray data in cotton and comparative profiles of these MAPKKK genes, different expression of them in multiple abiotic stresses and the expression at different cotton fiber developmental stages were analyzed. [Result] A sum of 114 MAPKKK genes were identified systematically in G. raimondii and classified into 3 subfamilies (Raf, ZIK and MEKK) according to the gene stucture and phylogenetic tree analyses. They were distributed on all the 13 chromosomes of G. raimondii, and segmental duplication and tandem duplication events may have occurred. Compared with the recently released 78 genes of G. raimondii MAPKKK family genes, 47 sequences are exactly the same ones. [Conclusion] The results are helpful to understand the evolution and function of MAPKKK gene family. Our results provide a foundation for future functional characterizations of MAPKKK genes in cotton and probably other Gossypium plants. 相似文献
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棉花黄萎病菌与抗黄萎病遗传育种研究进展 总被引：21，自引：1，他引：21
简要综述了棉花黄萎病菌及抗黄萎病遗传育种的研究进展。研究表明 ,各地的棉花黄萎病菌均存在致病力的分化 ,其致病机理是病菌侵入棉花后菌丝及孢子在导管内大量繁殖 ,同时刺激邻近的薄壁细胞产生胶状物质及侵填体而堵塞导管 ,使水分和养分运输发生困难 ,更重要的是病菌在棉株体内产生的糖蛋白毒素作用的结果。棉花抗黄萎病的遗传方式争论较大 ,但一般在温室由单一菌系接种鉴定时棉花黄萎病抗性表现为单基因遗传 ,而在田间病圃或用多菌系混合鉴定时 ,棉花黄萎病抗性表现为多基因遗传。由于陆地棉内缺乏高抗黄萎病资源 ,给棉花抗黄萎病育种带来一定困难 ,但 90年代以来 ,已育成 86 - 6、川 73 7、川 2 80 2、豫棉 1 9号、豫棉 2 1号等一些抗黄萎病的新品种。上述抗黄萎病品种在棉花黄萎病综合防治中起了重要作用 相似文献