共查询到19条相似文献，搜索用时 171 毫秒
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利用生物信息学方法,从玉米中鉴定到45个DUF581基因家族成员,与其他物种该家族基因的比较和系统发育分析表明,DUF581基因在物种间理化性质较保守;基于系统发育树,该家族基因可分为Ⅰ~Ⅵ 6个进化枝,进化枝Ⅱ~Ⅵ内的玉米DUF581基因结构保守,含有1~2个外显子,而进化枝Ⅰ内的家族成员平均含有5个外显子;玉米DUF581基因散布于10条染色体上;基因复制分析表明玉米的14个串联复制基因位于4个串联复制基因簇中,两对片段复制基因Zm00001d002530/Zm00001d017646和Zm00001d017646/Zm00001d051496同时又属于串联复制基因;在正常生长条件下,接近半数（22/45）的玉米DUF581基因在玉米的3种组织（叶、雌穗和雄穗）、4个生长发育时期（V12、V14、V18和R1期）内呈现组成型表达,并且在雌穗和雄穗两个生殖组织内有较高的表达水平;干旱胁迫下,26个DUF581呈现差异表达,V14和V18期的雌穗以及V12和V14期的雄穗中差异表达基因都被下调,而雌穗V12和R1期的大部分差异表达基因都被上调;此外,大部分复制基因对表现出差异的表达模式。 相似文献
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为明确三七Panax notoginseng NAC转录因子基因家族的分布、功能和结构,通过生物信息学分析法进行鉴定,对其理化特性、染色体位置和进化特征进行分析,并根据RNA-seq数据分析其家族成员的时空表达模式和受黑斑病菌Alternaria panax诱导后的表达情况。结果显示,三七中共有98个NAC基因家族成员,其编码蛋白质长度介于104～882个氨基酸之间,分子量在11.78～100.20 kD之间,等电点在4.12～9.75之间。这98个NAC基因家族不均匀地分布在三七的12条染色体上,其中1号染色体分布最多（16个）,而11号染色体上分布最少（1个）。三七NAC基因启动子区域存在与光响应、生长素响应、赤霉素响应及茉莉酸甲酯响应等相关的多种顺式作用元件。NAC基因在三七不同组织及根部不同发育时期均有表达,在受到黑斑病菌侵染的叶片中NAC部分基因家族成员显著上调表达。表明NAC基因家族在三七的生长发育和响应黑斑病菌侵染过程中具有重要作用。 相似文献
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利用生物信息学方法,从玉米中鉴定到45个DUF581基因家族成员,与其他物种该家族基因的比较和系统发育分析表明,DUF581基因在物种间理化性质较保守;基于系统发育树,该家族基因可分为Ⅰ～Ⅵ6个进化枝,进化枝Ⅱ～Ⅵ内的玉米DUF581基因结构保守,含有1～2个外显子,而进化枝Ⅰ内的家族成员平均含有5个外显子;玉米DUF... 相似文献
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利用生物信息学方法从50个物种内鉴定出283个蔗糖合酶(SUS)家族成员,对鉴定出的SUS家族成员进行系统发育分析、共线性分析、蛋白理化性质和亚细胞定位分析,以及干旱胁迫下玉米SUS基因在不同组织的表达模式分析,综合全面地分析了SUS基因家族的进化规律。系统发育树分析表明：SUS家族可划分为SUSⅠ、SUSⅡ、SUSⅢ三个亚家族,SUSⅢ内部双子叶植物进化枝明显分为两个拓扑结构相似的进化枝;亚细胞定位结果显示SUS蛋白主要在细胞质和细胞核中发挥作用,且SUSⅢ成员的理化性质与SUSⅠ、Ⅱ之间差异明显;共线性结果表明：SUSⅠ、Ⅱ中的共线性基因分别聚成一个独立的亚群,SUSⅢ的共线性基因聚成两个亚群;RNA-seq数据表明：玉米SUS基因Zm00001d045042、Zm00001d029087、Zm00001d029091、Zm00001d014876在干旱胁迫下呈现差异表达,该表达模式分别与各亚家族的基因结构模式较为一致。综合上述研究,推测出植物SUS基因的进化轨迹,即在蕨类植物到种子植物进化过程中分化出SUSⅢ,在被子植物分化以前出现SUSⅠ和SUSⅡ,且SUSⅢ在双子叶植物中具有... 相似文献
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动物和植物Argonaute蛋白在RNA诱导的基因沉默中发挥重要作用。本研究采用生物信息学方法在全基因组水平鉴定短管赤眼蜂Argonaute蛋白基因家族,鉴定并命名6个TpAGO蛋白。蛋白结构及系统进化分析将TpAGO家族蛋白分为PIWI和Ago两个亚家族。TpAGO蛋白二级结构的数量比例差异不大,分布却存在一定差异,其中α-螺旋分布差异尤为显著。TpAGO蛋白基因结构表现明显的多样性,基因外显子数量差异明显,从1到20个数量不等;Ka/Ks分析表明TpAGO2和TpAGO5,TpAGO3和TpAGO4两对基因间进化动力为正选择作用,其他组合间表现为纯化选择。EST表达分析发现TpAGO基因在昆虫的卵期、幼虫期、蛹期和成虫期均有不同程度的表达,而且靶向EST在同一物种中具有单一性别(雌性或雄性)表达特性,表明短管赤眼蜂TpAGO蛋白基因可参与赤眼蜂性别及发育调控。该研究不仅有助于揭示赤眼蜂产雌孤雌生殖的表观遗传机理,也有助于推动赤眼蜂等天敌的生防应用。 相似文献
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抗坏血酸过氧化物酶（Ascorbate peroxidase, APX）是植物活性氧代谢中重要的抗氧化酶之一,在植物抵抗氧化胁迫方面发挥重要作用。利用生物信息学方法对芹菜基因组中的APX基因家族成员进行鉴定和分析,并通过实时荧光定量PCR（quantitative real\|time PCR, qRT-PCR）验证分析AgAPXs在高温胁迫下的表达情况,为开展芹菜APX基因参与高温胁迫调控机制提供依据。结果表明：芹菜基因组中共有9个APX基因,随机分布在5个染色体上,并出现了基因片段复制现象;大多数基因被定位在细胞质中。系统发育分析表明,AgAPX基因家族可分为3个亚族,同一亚族中的成员具有相似的基因结构和基序。启动子顺式元件分析表明,大多数AgAPX基因含有多种与生长发育、植物激素和逆境胁迫相关的顺式元件。高温胁迫下,芹菜APX活性提高。qRT-PCR分析表明,AgAPXs在不同时间的高温处理下表达具有显著差异,并与转录组表达丰度相一致,AgAPX2、AgAPX3、AgAPX4、AgAPX5、AgAPX7的表达量和APX活性具有显著相关性,推测AgAPXs可能参与了芹菜抵御高温的调控过程。本研究初步鉴定并提供了芹菜APX基因家族成员信息,为今后进一步探索芹菜APX基因功能提供了重要的研究基础。 相似文献
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为研究高粱转录因子BZR1基因家族的表达特征,以高粱BTx623为材料,通过生物信息学及实时荧光定量PCR (quantitative real-time PCR,qPCR)技术对高粱BZR1基因家族进行鉴定和激素应答分析。结果表明,在高粱基因组中共鉴定到9个BZR1基因家族成员,根据染色体位置命名为SbBZR1-1~SbBZR1-9,其氨基酸序列长度在191~716 aa之间,理论分子量大小在20.99~80.41 kD之间,理论等电点在4.75~10.62之间;系统进化树分析显示,高粱BZR1基因家族与单子叶水稻和玉米的同源性为67%~100%;该家族各个成员之间外显子和内含子的数量差异较大。SbBZR1-3、Sb-BZR1-4和SbBZR1-9基因在高粱不同器官中的表达具有组织特异性;经200 μmol/L脱落酸处理后,SbBZR1-3基因的相对表达量逐渐升高,在9 h时达到最大,而高粱SbBZR1-4和SbBZR1-9基因的表达受到显著抑制;SbBZR1-3和SbBZR1-4基因在1 μmol/L油菜素内酯诱导下呈降低-升高-降低的表达趋势,但SbBZR1-9基因的表达受到显著抑制;在1 mmol/L γ-氨基丁酸和100 μmol/L褪黑素处理下,SbBZR1-3、SbBZR1-4及SbBZR1-9基因均显著上调表达;经10 μmol/L吲哚乙酸处理后,Sb-BZR1-3基因呈先升高后降低的表达趋势,SbBZR1-9基因的表达受到显著抑制,SbBZR1-4基因呈升高-降低-升高-降低的表达趋势。表明高粱BZR1基因家族在激素应答过程中具有重要作用。 相似文献
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Ht2背景下玉米对大斑病菌1号小种抗性基因的表达差异研究 总被引：3，自引：0，他引：3
以玉米自交系黄早四和黄早四Ht2近等基因型系为材料,利用cDNA-AFLP差异显示方法,分析玉米抗大斑病Ht2相关基因受大斑病菌1号小种胁迫后的差异表达情况。用筛选的70对引物在黄早四Ht2中扩增出76个差异显示片段,对差异条带回收、克隆和测序,并在NCBI上进行BLAST分析,有52个在GenBank中发现相似性较高、功能已知的EST序列,按其功能分为以下8类:基础能量代谢、跨膜运输蛋白、抗逆或抗病相关蛋白、蛋白质代谢、染色体组成蛋白及DNA复制和转录中的蛋白、信号传导、生长发育调控因子和转录因子,而其中以参与基础能量代谢的基因和抗逆或抗病相关基因所占比例较大。功能已知的52个差异表达片段在玉米1～9号染色体上均有分布,且在非亲和互作前期(6h)主要是一些信号相关基因的表达,12h表达的基因多属于抗病反应初期阶段的相关基因,与防卫有关的基因主要在48～72h表达,生长发育类基因在所检测的非亲和互作的不同阶段均表现作用,在非亲和互作后期主要是蛋白质代谢基因的表达。 相似文献
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通过克隆十字花科蔬菜重要害虫菜青虫Pieris rapae瞬时感受器电位通道中的Painless（Pain）基因,实现它的体外功能性表达,为进一步研究其在鳞翅目昆虫中的生理功能提供重要依据。根据菜青虫的转录组数据,采用RT-PCR克隆菜青虫Pain基因得到完整开放阅读框;利用哺乳动物表达系统在体外表达菜青虫Pain离子通道。鉴定出菜青虫Pain基因是GenBank登录号为NW_019093434.1的序列。其完成开放阅读框由2850个核苷酸组成,编码949个氨基酸。预测蛋白分子量为108.3 kDa,理论等电点pI为5.37。预测该基因所编码蛋白序列有2个结构域,分别是包含8个锚蛋白重复序列的锚蛋白结构域和6个跨膜区的跨膜结构域。氨基酸序列比对结果显示菜青虫Pain和家蚕、帝王蝶、小菜蛾以及烟草天蛾Pain的序列相似度都高达70%以上,但与黑腹果蝇Pain的序列相似度仅有31%。进化分析结果显示菜青虫Pain离子通道和小菜蛾以及帝王蝶的Pain离子通道的亲缘关系最近。体外钙流检测结果表明,菜青虫Pain离子通道可被43℃缓冲液激活,这说明菜青虫Pain离子通道可以感受高温。 相似文献
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Argonaute蛋白广泛存在于真核生物与原核生物中,可在非编码小RNA或DNA的引导下,对完全匹配或部分匹配的靶标进行切割、翻译抑制或染色体修饰。本研究利用生物信息学对127种卵菌与真菌的基因组进行分析,旨在了解各个物种中AGO家族基因的数量、蛋白结构域、进化关系及转录模式等。结果发现,大部分卵菌与真菌的基因组中(51%)含有2个AGO基因,而疫霉菌和壶菌等平均含有4个以上。卵菌与真菌的AGO基因在进化上相互独立,多拷贝AGO基因可能是通过基因复制形成;大部分AGO基因具有6个可预测的功能域(即:N端、Linker 1、PAZ、Linker 2、MID和PIWI),并且在PAZ和PIWI功能域上,与核酸5'和3'端结合及与催化活性相关的氨基酸位点整体相对保守,仅个别位点存在一定的差异。侵染大豆过程中,大豆疫霉和终极腐霉的两对同源AGO基因具有保守的表达模式,且基因表达水平相对较高,可能具有相似的生物学功能。上述结果将为深入解析AGO介导的RNA干扰机制及生物学功能奠定基础。 相似文献
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Leaf blotch and fruit spot of apple caused by Alternaria species occur in apple orchards in Australia. However, there is no information on the identity of the pathogens and whether one or more Alternaria species cause both diseases in Australia. Using DNA sequencing and morphological and cultural characteristics of 51 isolates obtained from apple leaves and fruit with symptoms in Australia, Alternaria species groups associated with leaf blotch and fruit spot of apples were identified. Sequences of Alternaria allergen a1 and endopolygalacturonase gene regions revealed that multiple Alternaria species groups are associated with both diseases. Phylogenetic analysis of concatenated sequences of the two genes resulted in four clades representing A. arborescens and A. arborescens‐like isolates in clade 1, A. tenuissima/A. mali isolates in clade 2, A. alternata/A. tenuissima intermediate isolates in clade 3 and A. longipes and A. longipes‐like isolates in clade 4. The clades formed using sequence information were supported by colony characteristics and sporulation patterns. The source of the isolates in each clade included both the leaf blotch variant and the fruit spot variant of the disease. Alternaria arborescens‐like isolates were the most prevalent (47%) and occurred in all six states of Australia, while A. alternata/A. tenuissima intermediate isolates (14%) and A. tenuissima/A. mali isolates (6%) occurred mostly in Queensland and New South Wales, respectively. Implications of multiple Alternaria species groups on apples in Australia are discussed. 相似文献
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Jonathan Scauflaire Olivier Mahieu Julien Louvieaux Guy Foucart Fabien Renard Fran?oise Munaut 《European journal of plant pathology / European Foundation for Plant Pathology》2011,131(1):59-66
In order to investigate the pre-harvest contamination of maize plants by Fusarium species in Belgium, a three-year survey has been performed in five fields in which three hybrids differing in susceptibility
to maize stalk rot were sampled at four different physiological stages. An extensive collection of 5,659 Fusarium isolates characterized at the species level was established during the 2005, 2006, and 2007 growing seasons, with a total
of 23 different Fusarium species identified to occur on ears and stalks. A high number of plants was already contaminated by Fusarium spp. at the anthesis stage, although no symptoms were visible on ears or on stalks. As the season progressed, the incidence
of Fusarium-infected maize plants reached 100% in several fields. At the end of the growing season, the most frequently isolated species
in maize ears were F. graminearum, sometimes associated with F. avenaceum, F. crookwellense, F. culmorum, F. poae, and F. temperatum, a new species recently described on maize. The predominant Fusarium species detected in stalks at the end of the growing season were F. graminearum and F. crookwellense, often associated with F. culmorum and F. temperatum. Year-to-year variability observed for the incidence of F. graminearum can most likely be associated with differences in climatic conditions among the three years. 相似文献
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草地贪夜蛾取食诱导玉米叶片转录组分析 总被引：2，自引：2，他引：0
为阐明玉米响应草地贪夜蛾Spodoptera frugiperda取食胁迫防御反应的分子机制,利用RNAseq技术对草地贪夜蛾取食的玉米叶片进行转录组测序分析,并对抗虫代谢产物生物合成途径中的基因进行筛选鉴定。结果显示,与未接虫对照相比,草地贪夜蛾取食18 h导致玉米叶片中有1 645个基因差异表达(log2|处理/对照|1且FDR0.05),其中上调表达基因有1 352个,下调表达基因有293个。茉莉酸、水杨酸、乙烯等植物激素生物合成与信号转导途径相关基因大多上调表达,其中44个茉莉酸途径相关基因全部上调表达,说明该途径在玉米响应草地贪夜蛾取食诱导的防御反应中发挥着核心作用,其它激素生物合成与信号转导途径发挥协同作用。玉米重要抗虫次生代谢物苯并噁唑嗪酮类生物合成相关基因中有9个基因上调表达;15个萜烯挥发物生物合成相关差异表达基因中有14个上调表达,包括8个萜烯合成酶基因和1个CYP基因CYP92C5。表明草地贪夜蛾取食会诱导玉米复杂的植物激素途径和基因调控机制,激活以次级抗虫代谢物合成为主的防御反应。 相似文献
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Anne-Laure Boutigny Jonathan Scauflaire Nicolas Ballois Renaud Ioos 《European journal of plant pathology / European Foundation for Plant Pathology》2017,148(4):997-1001
The presence of Fusarium temperatum in France was investigated by analyzing 40 Fusarium strains, previously isolated from infected maize ears in 2011 and formerly identified as Fusarium subglutinans based on morphological characteristics. In this study, 26 strains out of the 40 were identified as F. temperatum and 14 as F. subglutinans based on sequencing of the translation elongation factor 1α gene. The phylogenetic analysis showed that the two species represented two clades strongly supported by bootstrap values. The pathogenicity of F. temperatum strains was confirmed on maize ears. This study provides new information about F. temperatum isolated from maize in France. 相似文献
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Characterization and taxonomic reassessment of the box blight pathogen Calonectria pseudonaviculata,introducing Calonectria henricotiae sp. nov. 
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下载免费PDF全文 B. Gehesquière J. A. Crouch R. E. Marra K. Van Poucke F. Rys M. Maes B. Gobin M. Höfte K. Heungens 《Plant pathology》2016,65(1):37-52
Calonectria pseudonaviculata, the causal agent of the disease of Buxus spp. known as ‘box blight’, was first detected in the mid‐1990s in the UK and New Zealand. Since then, the geographic range of box blight has rapidly expanded to at least 21 countries throughout temperate regions of the world, causing significant losses in nurseries, gardens and wild boxwood populations. This study determined the genetic diversity in a collection of 234 Calonectria isolates from diseased Buxus plants, originating from 15 countries and four continents. Two genetic clades, G1 and G2, were identified within this sample using multilocus phylogenetic analysis. The application of genealogical concordance phylogenetic species recognition criteria using four independent nuclear loci determined that the Calonectria isolates in these two clades are separate phylogenetic species. The isolates in the G1 clade were upheld as C. pseudonaviculata sensu stricto. Based on phylogenetic distinctiveness and the lack of mating, a new species is proposed, Calonectria henricotiae sp. nov., for the Calonectria isolates in the G2 clade. A PCR‐RFLP assay and real‐time PCR assays were developed to easily and reproducibly differentiate these species. To assess the practical implications of the identification of the two species, their physiology, fungicide susceptibility and pathogenicity were compared. No differences in pathogenicity were observed. However, C. henricotiae isolates exhibited greater thermotolerance and reduced sensitivity to specific triazole as well as strobilurin fungicides. The identification of a second phylogenetic species causing box blight may have a substantial impact on the epidemiology and control of this destructive disease. 相似文献
18.
基于已发表的灭字脊虎天牛Xylotrechus quadripes的触角转录组数据,采用BLAST同源搜索的方法从转录组中一共鉴定到14个CSP基因,所有CSP均具有全长序列、信号肽序列和4个保守的半胱氨酸。序列比对结果表明,灭字脊虎天牛CSP间氨基酸一致性差异较大(12%~73%),平均值为34%;具有C1-X6-C2-X18-C3-X2-C4的半胱氨酸保守模式。进化分析表明,除XquaCSP8和XquaCSP12外,其余XquaCSPs聚类到不同分支。表达谱分析表明,XquaCSP7基因在触角特异表达;XquaCSP4、CSP5、CSP12和CSP14基因在触角高表达;XquaCSP13基因在足特异表达;其余XquaCSPs基因在多个组织中有表达。结合测定结果发现,XquaCSP7与测试的21种寄主气味结合能力均较弱,荧光取代率在4.5%~13.5%之间,其中与苯乙酮的结合能力最强,荧光取代率为13.5%。研究结果可为后续灭字脊虎天牛CSP基因的功能研究奠定基础。 相似文献
19.
A total of 57 Ilyonectria liriodendri isolates were identified by a combination of species‐specific PCR and DNA sequencing from a collection of 174 Ilyonectria‐like isolates recovered from 101 diseased grapevine samples. These samples were representative of the national vineyard, comprising material contributed by 49 grape growers across seven grape growing areas. This species was predominant, representing 33% of the recovered isolates, and has been reported as a major pathogen of grapevines in other countries. The genetic diversity of the 57 New Zealand isolates was compared to that of isolates from Australia and South Africa using universally primed polymerase chain reaction (UP‐PCR). A total of 66 informative loci distinguished 52 genotypes, of which five contained up to four clonal isolates. Four main clades were identified in a neighbour‐joining (NJ) tree. The international isolates (Australia and South Africa) were placed in a clade that did not include New Zealand isolates. There was a high level of intra‐ and inter‐vineyard genetic variation indicating the free movement of isolates between regions. A subset of nine isolates from different branches of the NJ tree produced two vegetative compatibility groups and hyphal fusion was observed between non‐self pairings. Pathogenicity tests using isolates from different genetic groups inoculated onto either detached roots or 1‐year‐old potted vines showed variability in virulence; however, no correlations were detected. 相似文献