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ABSTRACT Species-specific detection of Diaporthe phaseolorum and Phomopsis longicolla from soybean seeds was accomplished using polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) and TaqMan chemistry. To use these detection systems, fungal DNA was released from soybean seed coats using an ultrasonic processor to break the cells. DNA fragment lengths ranged from 200 to 1,200 base pairs (bp), with the majority of fragments <500 bp. Based on DNA sequences of the internal transcribed spacer (ITS) regions of ribosomal DNA, three TaqMan primer/probe sets were designed. Primer/probe set PL-5 amplified a 96-bp fragment within the ITS1 region of P. longicolla, D. phaseolorum var. caulivora, D. phaseolorum var. meridionalis, and D. phaseolorum var. sojae. Set PL-3 amplified a 86-bp DNA fragment within the ITS2 region of P. longicolla. Set DPC-3 amplified a 151-bp DNA fragment within the ITS2 region of D. phaseolorum var. caulivora. TaqMan primer/probe sets were able to detect as little as 0.15 fg (four copies) of plasmid DNA. When using PCR-RFLP for Diaporthe and Phomopsis detection, the sensitivity was as low as 100 pg of pure DNA. Among 13 soybean seed lots from Italy and the United States, the total Diaporthe and Phomopsis detected using a traditional seed-plating technique ranged from 0 to 32%. P. longicolla was most prevalent, followed by D. phaseolorum var. sojae. D. phaseolorum var. caulivora, which only occurred in 0.5% of the Italian seed lots, was not detected in the U.S. seed lots. D. phaseolorum var. meridionalis was not detected in either the U.S. or Italian seed lots. Using TaqMan primer/probe set PL-3, the frequency of P. longicolla was 18% in seed lot I3, similar to the frequency obtained from PCR-RFLP and potato dextrose agar plating detection. The frequencies of D. phaseolorum and P. longicolla in each seed lot obtained by the different detection methods were comparable with respect to total infection and individual species detection. However, TaqMan detection provided the fastest results of all the methods tested. 相似文献
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Pioli RN Morandi EN Martínez MC Lucca F Tozzini A Bisaro V Hopp HE 《Phytopathology》2003,93(2):136-146
ABSTRACT Isolates of the Diaporthe/Phomopsis (D/P) complex were collected in the main soybean producing area of Argentina during the 1996-97, 1997-98, and 1998-99 growing seasons. Twenty-three morphologic characters related to type of colonies, stroma, pycnidia and conidia, presence of perithecia, and asci length were studied by principal component analysis (PCA). Genomic DNA were analyzed by the random amplified polymorphic DNA (RAPD) technique. From both studies, 18 isolates were identified as D/P complex and grouped in four major taxa: (i) Diaporthe phaseolorum var. meridionalis, (ii) D. phaseolorum var. caulivora, (iii) D. phaseolorum var. sojae, and (iv) Phomopsis longicolla. In addition to distinguishing interspecific and intraspecific variability, molecular markers allowed the detection of differences among isolates within the same variety. Pathogenicity was assayed in the greenhouse, by the toothpick method, inoculating the D/P isolates to soybean genotypes carrying different resistance genes (Rdc1, Rdc2, Rdc3, and Rdc4) against soybean stem canker (SSC). Pathogenic analysis distinguished two main groups: (i) the SSC-producing isolates, including D. phaseolorum var. meridionalis and D. phaseolorum var. caulivora, and (ii) the non-SSC-producing isolates, including D. phaseolorum var. sojae and P. longicolla. Cultivar RA-702 (susceptible control) was compatible with both D. phaseolorum var. meridionalis and D. phaseolorum var. caulivora isolates; meanwhile, Tracy-M (Rdc1 and Rdc 2 genes) was incompatible with D. phaseolorum var. meridionalis but compatible with D. phaseolorum var. caulivora isolates. The fact that Rdc1 and Rdc2 together (as in Tracy-M) confer an almost immune reaction to all assayed isolates of D. phaseolorum var. meridionalis but were ineffective against the D. phaseolorum var. caulivora isolates evaluated suggests that the virulence or avirulence genes in D. phaseolorum var. meridionalis and D. phaseolorum var. caulivora are different. Moreover, physiological races of D. phaseolorum var. meridionalis were detected by using differential soybean genotypes carrying distinct single Rdc genes. As far as we know, this is the first report on the existence of physiological races of D. phaseolorum var. meridionalis in South America. Selective pressure due to deployment of resistant host cultivars may have changed the frequency of the virulence or avirulence genes within the population of D. phaseolorum var. meridionalis. On the whole, our results show that pathogenic variability of D. phaseolorum in the core soybean-producing area of Argentina is higher than previously recognized. 相似文献
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基于MAXENT的大豆南北方茎溃疡病菌在中国适生区的预测 总被引：4，自引：0，他引：4
利用MAXENT生态位模型和GIS系统,对大豆南北方茎溃疡病菌在我国的适生区进行预测.模型分析结果表明,这两种病菌在我国的潜在适生区域广泛.大豆北方茎溃疡病菌除了我国的宁夏、海南省外,其它省市均有该菌的适生分布区,其中适生等级高的地区主要在江苏、安徽、浙江、上海、江西和湖北6省.大豆南方茎溃疡病菌除了宁夏、青海、西藏外,我国的其它地区均为该菌的潜在适生区域,其中适生等级高的地区主要集中在江西、上海、江苏、安徽、浙江、河南以及陕西南部、四川东部和重庆的部分地区. 相似文献
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CLIMEX-GIS预测大豆北方茎溃疡病菌在中国的潜在分布 总被引：1，自引：0，他引：1
大豆北方茎溃疡病菌是大豆的重要病原菌,广泛分布于世界主要大豆产区,造成严重的产量和品质损失。本文应用生物模型CLIMEX结合GIS软件预测大豆北方茎溃疡病菌在中国的适生区,并根据EI值划分相应的适生等级。结果表明,大豆北方茎溃疡病菌在我国绝大部分地区适合生长,其中东北地区、华北地区和云贵高原地区处于中适生区或高适生区。该菌在我国还未报道,通过分析其在我国潜在分布区对于防止病菌的传入、传播和蔓延有重要的检疫意义。 相似文献
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噻唑膦在不同介质不同pH条件下热贮稳定性 总被引：1，自引：0，他引：1
噻唑膦加工后的稳定性是剂型选择的关键,为了提高其稳定性,延长其持效期,本研究通过噻唑膦在几种介质中的热贮稳定性试验,研究了酸碱度及介质对噻唑膦化学稳定性及稳定剂环氧大豆油对噻唑膦水乳剂热贮稳定性的影响,从而探索出噻唑膦在不同介质中稳定的最佳pH范围。研究结果发现,噻唑膦在同一pH下不同介质中的稳定性表现为硅藻土膨润土水乳剂,当pH为4.5时噻唑膦的稳定性最佳,而且加入0.2%的环氧大豆油做稳定剂可使噻唑膦在水乳剂中的分解率控制在10%以下。总之噻唑膦在酸性介质中较稳定,在硅藻土和膨润土中的稳定性要高于水乳剂中的稳定性。 相似文献
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Balesdent MH Jedryczka M Jain L Mendes-Pereira E Bertrandy J Rouxel T 《Phytopathology》1998,88(11):1210-1217
ABSTRACT The blackleg disease of oilseed rape is caused by an ascomycete species complex termed Leptosphaeria maculans (anamorph Phoma lingam). L. maculans isolates collected worldwide were gathered in the International Blackleg of Crucifers Network (IBCN) collection. Representative IBCN isolates, along with one P. nigrificans isolate, were further analyzed using polymerase chain reaction (PCR) amplification of the internal transcribed spacer (ITS) region. ITS size polymorphism discriminated three groups: (i) P. nigrificans, (ii) Tox(+) and 'Lepidium' isolates, and (iii) NA1, NA2, NA3, 'Thlaspi', and 'Erysimum' isolates. Digestion of the ITS region with 19 selected endonucleases showed restriction site polymorphism between the different subgroups: digestion with RsaI could discriminate Tox(+) from 'Lepidium' isolates, whereas digestion with four enzymes, i.e., HaeIII, EcoRII, RsaI, and AluI, was needed to discriminate between NA1, NA2, NA3, 'Thlaspi', and 'Erysimum' isolates. No restriction site polymorphism was observed between isolates within the 'Thlaspi', Tox(+), NA1, and NA2 subgroups. Direct amplification of the ITS region could be achieved using intact conidia, collected either in axenic cultures or on leaf lesions, with only a 4-min 95 degrees C denaturation step prior to PCR reaction. A routine identification protocol requiring no DNA extraction and a sequential use of a few restriction enzymes following PCR has been used successfully for large-scale identification of French field isolates. 相似文献
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ABSTRACT Root and stem rot caused by Phytophthora sojae is one of the most destructive diseases of soybean (Glycine max) worldwide. P. sojae can survive as oospores in soil for many years. In order to develop a rapid and accurate method for the specific detection of P. sojae in soil, the internal transcribed spacer (ITS) regions of eight P. sojae isolates were amplified using polymerase chain reaction (PCR) with the universal primers DC6 and ITS4. The sequences of PCR products were aligned with published sequences of 50 other Phytophthora species, and a region specific to P. sojae was used to design the specific PCR primers, PS1 and PS2. More than 245 isolates representing 25 species of Phytophthora and at least 35 other species of pathogens were used to test the specificity of the primers. PCR amplification with PS primers resulted in the amplification of a product of approximately 330 bp, exclusively from isolates of P. sojae. Tests with P. sojae genomic DNA determined that the sensitivity of the PS primer set is approximately 1 fg. This PCR assay, combined with a simple soil screening method developed in this work, allowed the detection of P. sojae from soil within 6 h, with a detection sensitivity of two oospores in 20 g of soil. PCR with the PS primers could also be used to detect P. sojae from diseased soybean tissue and residues. Real-time fluorescent quantitative PCR assays were also developed to detect the pathogen directly in soil samples. The PS primer-based PCR assay provides a rapid and sensitive tool for the detection of P. sojae in soil and infected soybean tissue. 相似文献
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Satoko KANEMATSU Nobuhiro MINAKA Takao KOBAYASHI Akira KUDO Yoshihiro OHTSU 《Journal of General Plant Pathology》2000,66(3):191-201
Sequences of the ribosomal DNA (rDNA) internal transcribed spacer (ITS) regions were examined to infer a molecular phylogeny
of small-spored Phomopsis isolates, designated W-type (mainly white colony, weakly virulent, bearing both alpha and beta conidia at 25°C on PDA) and
G-type (mainly gray colony, highly virulent, bearing only alpha conidia at 25°C on PDA), and P. amygdali from fruit trees. Phomopsis G-type and P. amygdali were a monophyletic group distinct from the W-type. The W-type isolates were divided into two monophyletic groups. Diaporthe citri, D. tanakae, P. asparagi, P. viticola, P. vitimegaspora and D. nomurai, which are morphologically distinguishable from W- and G-types, differed from the W- and G-types in molecular phylogenetic
analyses. PCR-RFLP analysis of rDNA ITS regions was useful to distinguish each of the Phomopsis species and groups using three restriction enzymes. In mating tests, W-type isolates from fruit trees were heterothallic and
inter-fertile even between isolates belonging to the different monophyletic groups. Isolates of the G-type and P. amygdali collected in Japan were cross-fertile. Some isolates from Lunaria annua, Ulmus glabra and Juglans regia belonged to one of the two monophyletic groups of the W-type and were cross-fertile with W-type isolates from Rosaceous fruit
trees.
Received 27 September 1999/ Accepted in revised form 27 January 2000 相似文献
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Inspection of 16 017 samples of soybean seeds imported into India from 1978 to 2004 resulted in the detection of 21 pathogens, including Peronospora manshurica which is not present in India. Seed-borne fungi of high economic significance included: Ascochyta sojicola , Botryotinia fuckeliana , Cercospora kikuchii , Colletotrichum dematium , Corynespora cassicola , Diaporthe phaseolorum var . sojae , Fusarium oxysporum, Glomerella cingulata , Glomerella glycines , Macrophomina phaseolina , Nectria haematococca , Passalora sojina , Thanatephorus cucumeris as well as other fungal pathogens for which soybean is not a host such as Alternaria padwickii , Cochliobolus sativus , Fusarium culmorum , Fusarium poae , Glomerella graminicola , Setosphaeria rostrata, Verticillium albo-atrum , etc. Some of the fungi detected have very wide host range. Details are presented on the fungi detected, the countries from which the imported consignments originated, and phytosanitary significance. 相似文献
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ABSTRACT Seven hundred forty-nine isolates of Phytophthora spp. were obtained from irrigation canals in eastern Washington State during the 1992 to 1995 and 1999 growing seasons. Isolates were retrieved using pear baiting techniques. All isolates were pathogenic to pear and were present in irrigation water beginning early in fruit development. Over the course of the 5 year study, 10 and 5% of isolates were identified as P. cactorum and P. citricola, respectively, using morphological criteria. The remaining isolates could not be identified using morphological criteria. Colony morphology of these isolates was characterized during all years of the study. In 1999, more detailed studies utilizing polymerase chain reaction restriction fragment length polymorphism (PCR-RFLP) analysis of entire internal transcribed spacer (ITS) regions (ITS1, 5.8S, and ITS2) of ribosomal DNA for 180 isolates, and sequence analysis of ITS2 for 50 isolates, were used to investigate genetic variation and phylogenetic relationships among isolates. Isolates were divided into 12 groups based on their growth type on corn meal agar. Restriction digestion of the entire ITS region with three enzymes revealed 11 restriction digestion patterns among 180 isolates. PCR-RFLP and sequence data were obtained for 12 reference Phytophthora spp. (two species in each of Waterhouse's six morphological groups). Phylogenetic analysis of ITS2 regions revealed nine clades, each with strong bootstrap support. Molecular analyses revealed 23 isolates that were in the P. gonapodyides clade, 9 in the P. parasitica clade, 1 in the P. cactorum clade, 7 in the P. citricola/capsici clade, and 4 in the P. cambivora/pseudotsugae clade. The three isolates comprising clade 5 were significantly distinct from all other Phytophthora spp. in the databases and may represent a new Phytophthora sp. Colony morphology was not consistently correlated to PCR-RFLP pattern or ITS2 phylogeny, suggesting that the former criterion is insufficient for species identification. The results of this study indicate that at least nine phylogenetically distinct taxa of Phytophthora pathogenic to pear are present in irrigation water in North Central Washington. 相似文献
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The Rdm4 gene from soybean cv. Hutcheson has been extensively used to incorporate resistance to soybean stem canker (SSC), caused by Diaporthe phaseolorum var . meridionalis (Dpm), into soybean commercial cultivars. The objective of this work was to characterize the inheritance of the Rdm4 locus in different populations derived from the cross: J77-339 ( rdm / rdm , susceptible) × Hutcheson ( Rdm4 / Rdm4 , resistant) in independent interactions with two local isolates of Dpm. Four F2 populations were obtained and two were advanced to the F3 generation as separate F2:3 families to perform progeny tests. Each population was inoculated with the CE109 and/or CE112 isolates of Dpm. Within each plant–pathogen interaction, the resistance gene segregated as completely dominant. However, cross resistance, or opposite disease reactions, to CE109 and CE112 isolates of Dpm were observed in four F2:3 families, indicating an intergenic recombination event between two nonallelic genes interacting specifically with each isolate of Dpm. The distance between them, estimated as the recombination fraction, was 29%, suggesting that both genes were not tightly linked, but close enough to segregate together in most crosses. Results indicated the existence of a genomic region in cv. Hutcheson composed of race-specific resistance loci with at least two Rdm genes: the previously recognized Rdm4 and a novel gene, tentatively named Rdm5 , conferring specific resistance to Dpm isolates CE109 and CE112. 相似文献
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Anne Viguié Felicity Vear Denis Tourvieille de Labrouhe 《European journal of plant pathology / European Foundation for Plant Pathology》1999,105(7):693-702
Three artificial infection tests measuring the rate of mycelial growth of 7 Phomopsis/Diaporthe helianthi isolates were used on leaves, stems and capitula of 6 sunflower hybrids. Isolates and hybrids were chosen to cover the range of variability and resistance levels known at the present time. Significant genotype and isolate effects and isolate×genotype interactions were shown in all the tests, with some changes in order of hybrids according to the isolate used for infection. Consequences of interactions in breeding for stable resistance to P./D. helianthi are discussed. 相似文献
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引起大豆疫霉根腐病的大豆疫霉菌(Phytophthora sojae)是危害大豆的破坏性病原菌之一,也是我国重要的检疫性植物病原菌。简单、快速、准确的鉴定和检测技术是阻止大豆疫霉菌传入和病害早期诊断的有效工具。本研究从大豆疫霉菌细胞色素氧化酶基因Ⅱ(coxⅡ)序列和两个激发素(elicitin)家族基因EST序列中开发了3对大豆疫霉菌特异引物:Cox3-F/Cox3-R、PSEL1-F/PSEL1-R和PSEL2-F/PSEL2-R。这3对引物在大豆疫霉菌中分别扩增出450、289bp和370bp的特异性片段,其检测大豆疫霉菌基因组DNA的灵敏度分别为20、2pg/μL和2pg/μL。3对引物能够有效检测大豆疫霉菌侵染的大豆病株,可以用于病害诊断和鉴别。 相似文献
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G.J. McKay Averil E. Brown A.J. Bjourson P.C. Mercer 《European journal of plant pathology / European Foundation for Plant Pathology》1999,105(2):157-166
Nucleotide sequences of the ribosomal DNA (rDNA) internal transcribed spacers (ITS) 1 and 2 and a 1068bp section of the beta-tubulin gene divided seven designated species of Alternaria into five taxa. Stemphylium botryosum formed a sixth closely related taxon. Isolates of A. linicola possessed an identical ITS sequence to one group of A. solani isolates, and two clusters of A. linicola isolates, revealed from beta-tubulin gene data to show minor variation, were as genetically similar to isolates of A. solani as they were to each other. We suggest, therefore, that A. linicola falls within the species A. solani. Similar results suggest that A. lini falls within the species A. alternata. RAPD analysis of the total genomic DNA from the Alternaria spp. concurred with the nucleotide sequence analyses. An oligonucleotide primer (ALP) was selected from the rDNA ITS1 region of A. linicola/A. solani. PCR with primers ALP and ITS4 (from a conserved region of the rDNA) amplified a c. 536bp fragment from isolates of A. linicola and A. solani but not from other Alternaria spp. nor from other fungi which may be associated with linseed. These primers amplified an identical fragment, confirmed by Southern hybridization, from DNA released from infected linseed seed and leaf tissues. These primers have the potential to be used also for the detection of A. solani in host tissues. 相似文献