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1.
Eight genomic SSR markers with a M13 tail attached were used to assess the genetic diversity of 72 Ussurian Pear accessions
(Pyrus ussuriensis Maxim.) in China. The M13-tailed method was effective in discriminating all the 32 wild accessions. All the 40 Ussurian Pear
cultivars could be successfully discriminated with the exception of 4 sets of synonymies or spots. A total of 108 alleles
were obtained with an average of 13.5 per locus. The expected heterozygosity, observed heterozygosity, and power of discrimination
were 0.78, 0.63, and 0.86 respectively. Three triploid cultivars (‘Anli’, ‘Ruan’er’, and ‘Pitaiguo’), and one wild accession,
P. ussuriensis ‘Xilin-3’, showed three alleles at some SSRs. The number of alleles and observed heterozygosity per locus for 40 Ussurian
Pear cultivars were 9.1 and 0.62, respectively, lower than the values of 32 wild accessions which were 11.3 and 0.65, respectively.
A dendrogram based on the SSR genotypes was obtained, showing two major groups corresponding to cultivated group and wild
group. All the cultivars fell into the cultivated group. Some subgroups (Nanguoli subgroup, Zhibazi subgroup, Xiangshuili
subgroup, Balixiang subgroup, Anli subgroup) could be found in the cultivated group. A very close relationship between ‘Huagaili’
and ‘Miansuan’, and a close relationship between ‘Anli’ and a wild accession, P. ussuriensis ‘Huangshanli’ could be found in Anli subgroup. ‘Nanguoli’ and ‘Xiaowuxiang’ showed a close relationship with at least one
identical allele at each locus with the exception of NH015a. 相似文献
2.
Hidetoshi Ikegami Hitoshi Nogata Keita Hirashima Mitsuo Awamura Takao Nakahara 《Genetic Resources and Crop Evolution》2009,56(2):201-209
Nineteen fig varieties and lines from Europe and Asia have been fingerprinted by ISSR, RAPD, and SSR markers, respectively,
using 13, 19, and 13 primer combinations. All primers produced 258 loci, with the highest number of loci (119) generated by
RAPD (R
p: 48.42). Clustering analysis was applied to the three marker datasets to elucidate the genetic structure and relationships
among these varieties. Mean genetic similarities were 0.787, 0.717, and 0.749, respectively, as determined using ISSR, RAPD,
and SSR. Each marker system produced incompletely separated clusters, although a weak binding group based on race type appeared
in the combined dataset. Comparisons of coefficients revealed no correlation between different similarity matrices; congruence
was observed between similarity matrices and co-phenetic matrices in all markers. Analysis of molecular variance (AMOVA) showed
that most of the total polymorphism was attributable to within-group variance (ISSRs + RAPDs, 97.41%; SSRs, 90.18%). These
results suggest that the genetic diversity of this fig population is low and that multiple marker utilization is critical
to estimate the relatedness of figs at the variety level. Additionally, it was presumed that ‘Houraihi’, the oldest variety
in Japan, was disseminated independently of other foreign varieties in the 17th century or before then. 相似文献
3.
Nahla V. Bassil B. Gilmore J. M. Oliphant K. E. Hummer J. A. Henning 《Genetic Resources and Crop Evolution》2008,55(7):959-969
Eight genic SSR loci were evaluated for genetic diversity assessment and genotype identification in Humulus lupulus L. from Europe and North America. Genetic diversity, as measured by three diversity indices, was significantly lower in European
cultivars than in North American wild accessions. Neighbor Joining cluster analysis separated the hop genotypes into European
and North American groups. These eight SSRs were useful in uniquely identifying each accession with the exception of two sets
of European landraces and a pair of Japanese cultivars, ‘Shinshuwase’ and ‘Kirin II’. An accession from Manitoba grouped with
the European (EU) cluster reflecting the group’s genetic similarity to older Manitoba germplasm used to develop ‘Brewer's
Gold’ and the gene pool arising from this cultivar. Cultivars grouped closely with one of their immediate parents. ‘Perle’
grouped with its parent ‘Northern Brewer and ‘Willamette’ grouped with its parent ‘Fuggle H’. Wild American accessions were
divided into two subgroups: a North Central group containing mostly H. lupulus var. lupuloides and a Southwestern group containing H. lupulus var. neomexicanus accessions. These eight SSRs will be valuable for genotype identification in European and wild American germplasm and may
potentially prove useful for marker-assisted selection in hop. PCR products from four previously reported primer pairs that
amplify the same intronic SSR regions as do the genic SSRs in this study were compared in eight common cultivars. Different
primer pairs generated robust markers at the chs2 and chi loci. However, only the HLC-004B and HLC-006 primer pairs amplified successfully at the chs3 and chs4 loci.
Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users. 相似文献
4.
R. Moreno J. A. Espejo A. Cabrera T. Millán J. Gil 《Genetic Resources and Crop Evolution》2006,53(4):729-736
A study has been conducted into the genetic variation analysis of the tetraploid asparagus landrace ‘Morado de Huetor’ and
its relationship with current commercial cultivars using Random Amplified Polymorphic DNA (RAPD) molecular markers. The presence
of different ploidic levels in the ‘Morado de Huetor’ landrace has been also studied using cytogenetic analysis. Ten decamer
oligonucleotides were used to obtain RAPD markers and to characterise 52 individuals of ‘Morado de Huetor’, 7 of the tetraploid
cultivar ‘Purple Passion’, and 55 of 5 diploid hybrid commercial cultivars. Jaccard similarity index was calculated and a
cluster analysis using UPGMA (Unweighted Pair-Group Method using Arithmetic Average) was performed. Tetraploid asparagus,
‘Morado de Huetor’ and ‘Purple Passion’, were well differentiated from the diploid ones showing a higher genetic variability.
This result suggests a different origin for tetraploid and diploid asparagus varieties. Within the diploid cultivars a variety
distribution was obtained. A specific monomorphic band (OPB20883) was found in tetraploid varieties. Within the diploid cultivars, two bands (OPB20830, OPC15705) can be used to distinguish between the hybrid cultivars used in this study. Tri-, penta-, hexa-, and octoploid plants were
found in ‘Morado de Huetor’. The origin of these ploidic levels is discussed and their use in the development of new varieties
is proposed. In conclusion, ‘Morado de Huetor’ is a genetic resource that could be used to increase the narrow genetic background
reported in diploid asparagus cultivars. 相似文献
5.
6.
Lu Bao Kunsong Chen Dong Zhang Yufen Cao Toshiya Yamamoto Yuanwen Teng 《Genetic Resources and Crop Evolution》2007,54(5):959-971
Simple sequence repeat (SSR) markers were used to assess genetic diversity and relationship of Pyrus L. cultivars native mainly to East Asia. A total of 168 putative alleles were generated from six primer-pairs (BGA35, KU10,
BGT23b, NH004a, NH011b and NH015a). All the SSR markers showed a high level of genetic polymorphism with a mean of 28 putative
alleles per locus and the heterozygosity of 0.63. The Dice’s similarity coefficient between cultivars ranged from 0.02 to
0.98 and Occidental pears generally had low affinities to Asian pears. Ten major groups were generated from all the accessions
by UPGMA clusters analysis. Chinese sand pears consisted of four groups with Chinese white pears and Japanese pears, of which
Chinese sand pears occurred in all four groups, presenting a large genetic diversity, Chinese white pears were included in
three groups, and Japanese pears only fell into one group. In the dendrogram, Chinese sand pears and Chinese white pears did
not form discrete group, even subgroups. Some Japanese pear cultivars had high affinities to Chinese sand pear cultivars.
These findings supports the authors’ previous viewpoints of Chinese white pears as a variety or an ecotype of Chinese sand
pears (P. pyrifolia var. sinensis (Lindley) Y. Teng et K. Tanabe) and the progenitor of Japanese pears coming from China. Cultivars of P. ussuriensis Maxim. were clustered together with one clone of P. hondoensis Nakai et Kikuchi, a relative species of P. ussuriensis. Cultivars of P. communis L. and other Occidental species formed three independent groups and were distant from most Asian pears, except for P. betulaefolia Bge. 相似文献
7.
Alexandra Yu. Novoselskaya-Dragovich Andrey V. Fisenko Nikolay K. Yankovsky Alexander M. Kudryavtsev Qijian Yang Zhenghui Lu Daowen Wang 《Genetic Resources and Crop Evolution》2011,58(4):533-543
Contemporary trends and perspectives of Chinese winter wheat breeding programs were explored using multiple alleles of gliadin
(Gli) and glutenin (Glu)-coding loci as genetic markers. To estimate genetic diversity and specific features of Chinese cultivars, the allele frequencies
and genetic diversity H in Chinese wheat pool were calculated and compared to those of cultivars from 11 regions of the world. Among all these cultivars
the Chinese ones exhibited the highest allelic diversity of the Gli loci while showing relatively low genetic variability for the Glu loci. Most (96%) of the cultivars examined had unique Gli allele compositions, which enabled to differentiate these cultivars with high precision. Cluster analysis of the genetic
distances among the wheats from different regions showed that the Chinese cultivars were close to Italian and Russian ones,
sharing with them the common Gli alleles. Clustering of modern cultivars and that of cultivars bred 10–15 years ago was essentially the same. All cultivars
from all of the countries examined were classified into three groups according to their quality based on their Glu allele compositions. The Chinese cultivars showed a moderate quality score of 7.0, which conforms to the quality evaluation
based on SDS sedimentation. This quality proved to be insufficiently high as compared to cultivars from other countries. However,
the genetic diversity estimation suggests that Chinese cultivars have a potential for quality improvement. 相似文献
8.
Ali M. Missaoui Andrew H. Paterson Joseph H. Bouton 《Genetic Resources and Crop Evolution》2006,53(6):1291-1302
Information regarding the amount of genetic diversity is necessary to enhance the effectiveness of breeding programs and germplasm conservation efforts. Genetic variation between 21 switchgrass genotypes randomly selected from two lowland (‘Alamo’ and ‘Kanlow’) and one upland (‘Summer’) synthetic cultivars were estimated using restriction fragment length polymorphism (RFLP) markers. Comparison of 85 RFLP loci revealed 92% polymorphism between at least two genotypes from the upland and lowland ecotypes. Within ecotypes, the upland genotypes showed higher polymorphism than lowland genotypes (64% vs. 56%). ‘Kanlow’ had a lower percent of polymorphic loci than ‘Alamo’ (52% vs. 60%). Jaccard distances revealed higher genetic diversity between upland and lowland ecotypes than between genotypes within each ecotype. Hierarchical cluster analysis using Ward's minimum variance grouped the genotypes into two major clusters, one representing the upland group and the other the lowland group. Phylogenetic analysis of chloroplast non-coding region trnL (UAA) intron sequences from 34 switchgrass accessions (6 upland cultivars, 2 lowland cultivars, and 26 accessions of unknown affiliation) produced a neighbor-joining dendrogram comprised of two major clusters with 99% bootstrap support. All accessions grouped in the same cluster with the lowland cultivars (‘Alamo’ and ‘Kanlow’) had a deletion of 49 nucleotides. Phenotypic identification of greenhouse-grown plants showed that all accessions with the deletion are of the lowland type. The deletion in trnL (UAA) sequences appears to be specific to lowland accessions and should be useful as a DNA marker for the classification of upland and lowland germplasm. 相似文献
9.
我国部分冬小麦新品种（系）SSR标记遗传差异的研究 总被引：31，自引：0，他引：31
本研究利用53对SSR引物对全田1999－2000年北方冬麦区及黄淮冬麦区观察圃中选出的48个新品种（系）进行遗传差异研究，共检测出58个SSR位点上的367个等位变异，平均每个位点有6.33个等位变异，其中B组每个位点的等位变异最多，这表明B基因组化更快，分化更大。48个品种（系）在全基因组及A、B、D基因组聚类结果表明这些品种的相似系数聚类的范围较小，为0.75－0.98。全基因组聚类结果与品种的系谱来源及育成地区相吻合。研究结果表明我国冬小麦品种的种质基础相对较狭窄。加强不同来源种质的利用和特异亲本类型的培育对我国冬小麦遗传改良非常重要，利用5个多态性高的SSR标记就可以将这48个小麦新品种（系）区分开，每个品种（系）都有各自独特的指纹图谱。 相似文献
10.
Hoy-Taek Kim Yutaka Hirata Hyun-Jung Kim Ill-Sup Nou 《Genetic Resources and Crop Evolution》2006,53(7):1375-1383
A PCR (polymerase chain reaction) amplification method using newly designed S-RNase primers was carried out in five Korean-bred
pear cultivars and ten Japanese-bred pear cultivars. A new S-RNase allele, designated as S10, was discovered from ‘Chengsilri’, containing a 1513 bp and two exons (213 bp in total) that coded for a peptide of 71 amino
acids. The S10-RNase allele contained the three conserved cysteine residues peculiar to S-RNase in Japanese pear and one histidine residue
essential for RNase activity. We compared nucleotide sequence similarity of the exon regions of ten pear S-RNase alleles.
The nucleotide sequence of S1 showed a high similarity to S4 (97.4%) and the new S10 shows 77.8% (S5) to 84.4% (S4) similarity with the other pear S-RNase alleles. S10 had a unique restriction endonuclease site for ‘HhaI’, with digests yielding fragments of 1235 and 491 bp. The S-genotype of pear cultivar (‘Chengsilri’) was determined to be
S5S10 by PCR–RFLP (restriction fragment length polymorphism). Cluster analysis of 49 known S-RNase alleles of the Rosaceae separated
into two divergent groups are as follows: group I: pear and apple, group II: almond, sweet cherry and mume. 相似文献
11.
Keizo Yonemori Chitose Honsho Akira Kitajima Malli Aradhya Edgardo Giordani Elvio Bellini Dan E. Parfitt 《Genetic Resources and Crop Evolution》2008,55(1):81-89
Sixty one persimmon (Diospyros kaki Thunb.) selections, including 17 Italian, 11 Spanish, 13 Japanese, six Korean, five Chinese, one Israeli, and eight of unknown
origin, were evaluated for genetic differences by AFLP analysis. Relationships among cultivars were evaluated by UPGMA clustering,
Neighbor Joining, and MultiDimensional Scaling. While similarities among groups were generally less than 0.60, both UPGMA
and Neighbor Joining separated European and Asian cultivars. Spanish and Italian cultivars were not separated by any of the
analyses, suggesting that they share a common gene pool, while Japanese, Chinese and Korean cultivars formed distinct clusters.
Diversity within groups was greater than diversity between groups. Most cultivars were quite polymorphic (only 0.60–0.80 similarity
between cultivars). In addition, the presence of several Japanese cultivars in the European group and a group of European
cultivars nested between Chinese and Korean groups suggest that similar, but different progenitors were used in the development
of the present European cultivars. ‘Kaki Tipo’ selections from different sources were clearly different by AFLP analysis,
indicating that they are separate cultivars. 相似文献
12.
Milene Silvestrini Michele G. Junqueira Andréa C. Favarin Oliveiro Guerreiro-Filho Mirian P. Maluf Maria B. Silvarolla Carlos A. Colombo 《Genetic Resources and Crop Evolution》2007,54(6):1367-1379
Genetic diversity among 115 coffee accessions from the Coffea Germplasm Collection of IAC was assessed using SSR markers. The germplasm represents 73 accessions of Coffea arabica derived from spontaneous and subspontaneous plants in Ethiopia and Eritrea, species center of origin and diversity, 13 commercial
cultivars of C. arabica developed by the Breeding Program of IAC, 1 accession of C. arabica cv. ‘Geisha’, 13 accessions of C. arabica from Yemen, 5 accessions of C. eugenioides, 4 accessions of C. racemosa and 6 accessions of C. canephora. Genetic analysis was performed using average number of alleles per locus (A), proportion of polymorphic loci (P), Shannon’s genetic index (H′ and G′ST) and clustering analysis. All evaluated species were distinguished by a cluster analysis based on Jaccard’s coefficient.
Differentiation between the cultivated plants of C. arabica and accessions derived from spontaneous and subspontaneous plants was observed. Spontaneous and subspontaneous accessions
from Ethiopia were separated according to the geographical origin: east and west of the Great Rift Valley. Cultivated plants
showed a low genetic diversity with a division in two groups: accessions from Yemen (H′=0,028) and Brazilian commercial cultivars (H′=0,030). The results agreed with previously reported narrow genetic basis of cultivated plants of C. arabica and supported the hypotheses about domestication of the species. This study also showed a significant genetic diversity among
accessions from Ethiopia and Eritrea present in the Germplasm Collection of IAC. This diversity is specially observed in accessions
from Sidamo (H′=0,143), Kaffa (H′=0,142) and Illubabor (H′=0,147) indicating their importance as source of genetic variability for coffee breeding programs. 相似文献
13.
Gert Poulsen Claus Holten Roland von Bothmer 《Genetic Resources and Crop Evolution》2007,54(5):1105-1115
Dead seeds of a fodder beet cultivar ‘Elvetham’ stored under ambient conditions since 1880 were compared to a homonymous sample
preserved in an on-farm situation in Denmark. DNA was isolated from single seeds and successfully applied to Amplified Fragment
Length Polymorphism (AFLP) analysis of the accessions. Six primer pairs were used to determine the similarity between the
two accessions based on 112 polymorphic bands. Furthermore, similarity among seven cultivars of fodder beets representing
the main types used in Scandinavia at the end of the 19th century was determined. This analysis was based on 152 polymorphic
bands. Differentiation among the seven cultivars was determined to a mean G
ST value of 0.438, while G
ST between the two ‘Elvetham’ accessions was 0.266. A principal coordinate analysis based on jaccards similarity index illustrates
that the two ‘Elvetham’ accessions are different from each other. The differentiation is higher than the value found between
two separate ‘Eckerndorfer’ accessions. The results indicate that the cultivated accession has changed. Additionally, the
value of applying old dead seed material for documentation in gene banks is demonstrated.
During the analysis it was found that DNA isolated from seeds and leaves behaved differently in the AFLP process, however,
the two fractions assigned to their common accession. 相似文献
14.
R. Sánchez-Pérez P. Martínez-Gómez F. Dicenta J. Egea D. Ruiz 《Genetic Resources and Crop Evolution》2006,53(4):763-770
In this study, 17 peach simple sequence repeat (SSR) sequences were used in the exploration of the genetic heterozygosity
level of several apricot cultivars from Spain, France, Greece, and the USA, and 23 descendants. The genotypes can be classified
in three groups as a function of their genetic heterozygosity (1) local cultivars from Murcia (Spain) (‘Gitanos’ and ‘Pepito
del Rubio’) and several descendants from crosses among these cultivars, with very low genetic heterozygosities (less than
0.30); (2) cultivars from France and Spain (‘Moniquí’, ‘Currot’ and ‘Bergeron’) and several descendants, with intermediate
levels of genetic heterozygosity (around 0.45); and (3) cultivars ‘Orange Red’ and ‘Goldrich’ from North America and ‘Lito’
from Greece, with the remaining descendants, having genetic heterozygosities higher than 0.50. The results showed the high
increase of genetic heterozygosity in the case of descendants from complementary crosses. The use of cultivars from North
America could increase greatly the genetic heterozygosity in the Spanish apricot breeding programs, enlarging the genetic
variability of the local cultivars. On the other hand, in the case of transgressive crosses among local Spanish cultivars,
the increase of genetic heterozygosity was much lower. 相似文献
15.
Margarita Mauro-Herrera Alan W. Meerow Lalith Perera Joanne Russell Raymond J. Schnell 《Genetic Resources and Crop Evolution》2010,57(2):203-217
A prior analysis of eight coconut cultivars with 15 microsatellite (SSR) markers drew unexpected relationships between two
of the out-crossing tall cultivars evaluated: ‘Atlantic Tall’ and ‘Panama Tall’. We further investigated the relationships
between these eight cultivars by increasing the number of individuals studied (particularly for ‘Atlantic Tall’ and ‘Panama
Tall’), by including 28 more molecular markers, and by adding two other cultivars to our analysis. Our results show that five
to ten coconut individuals do not represent a dependable sample to withdraw conclusions regarding cultivar/variety relationships,
particularly when studying out-crossing genotypes. As suggested in the prior study, a high level of hybridization was observed
between the ‘Atlantic Tall’ and ‘Panama Tall’ cultivars. However, at this time we were able to identify distinct groups for
each one of these two cultivars. The two clustering methods used (Neighbor Joining, NJ and Unweighted Pair Group Method with
Arithmetic mean, UPGMA) produced dendrograms that resolved contrasting cultivar relationships, especially for the ‘Atlantic
Tall’ and ‘Panama Tall’ cultivars. We discuss the implications of our results in regard to current scenarios of coconut domestication
and future considerations when assessing genetic relationships among different varieties. 相似文献
16.
Łukasz Wolko Wojciech Antkowiak Elżbieta Lenartowicz Jan Bocianowski 《Genetic Resources and Crop Evolution》2010,57(6):801-806
The aim of this study was to identify the group of highly polymorphic microsatellite markers for the identification of six
pear cultivars (P. communis) and two individuals of wild pear (P. pyraster). From among 40 tested SSR markers, 19 were selected to profile genetic diversity in pear genotypes due to high polymorphisms.
These markers showed high heterozygosity levels (0.5–1) and, on average, 6.4 alleles per marker were found. The set of microsatellite
markers employed in this study demonstrated usefulness of microsatellite markers for the identification of pear genotypes.
The examined wild forms were represented in this study by only two individuals of P. pyraster. It can be assumed that these forms were distinctly different from the cultivated pear cultivars. 相似文献
17.
Genetic diversity was investigated in 73 accessions of emmer wheat (Triticum dicoccon Schrank) from 11 geographical regions using a set of 29 simple-sequence repeat (SSR or microsatellite) markers, representing
at least two markers for each chromosome. The SSR primers amplified a total of 357 different alleles with an average of 12.31
alleles per locus. The number of fragments detected by each primer ranged between 6 (Xgwm1066) and 21 (Xgwm268). Null alleles were detected in nine of the 29 primers used. A high level of gene diversity index was observed. Across the
29 primers, gene diversity ranged from 0.60 (Xgwm46) to 0.94 (Xgwm655), with a mean of 0.82. There was a highly significant correlation (r=0.882; p<0.01) between gene diversity index and the number of loci, showing the number of loci per se is a strong indicator of diversity. Analysis of genetic diversity within and among eleven geographical regions revealed most
of the genetic diversity of the total sample resided within regions. The coefficient of gene differentiation (Gst = 0.27)
showed that the genetic variation within and among the 11 geographical regions was 73 and 27%, respectively. High value of
mean number of alleles per locus was found in Iran (4.86) followed by Morocco (4.10) and Armenia (4.03). On the contrary,
lower mean number of alleles per locus was detected in Yemen (2.83). The average gene diversity index across regions ranged
from 0.52 (Slovakia) to 0.67 (Morocco) with an average of 0.60. Multivariate techniques of principal component analysis and
clustering were employed to examine genetic relationship among the 73 emmer wheat accessions vis-à-vis geographical regions
of collections. The genetic distance coefficients for all possible 55 pairs of regional comparisons ranged from 0.63 (between
Iran and Armenia, Georgia and Azerbaijan, Georgia and Slovakia) to 0.97 (between Morocco and Yemen, Spain and Georgia, and
Turkey and Iran) with a mean of 0.82. From the PCA results, a two dimensional plot of PC1 versus PC2 was constructed. The
scatter plot of the first two principal components which explained altogether 27% of the total variation depicted the presence
of a clear pattern of geographical differentiation except in few cases like accessions from Caucasian region. Similar pattern
of genetic relationships among accessions was observed in cluster analysis. The study provided genetic information of emmer
wheat in relation to geographical regions of origin. The information could be utilized in crop improvement, germplasm conservation
programs, and in further investigation. 相似文献
18.
Amplified fragments length polymorphism (AFLP) was used to distinguish 20 cultivars of sesame (Sesamum indicum L.) and to elucidate the genetic relationship among these genotypes. The data were also used to estimate the usefulness of
parameters currently used to assess the informativeness of molecular markers. A total of 339 markers were obtained using 8
primer combinations. Of the bands, 91% were polymorphic. Five primer combinations were able to distinguish all 20 cultivars
used. None of the remaining three primer combinations could distinguish all accessions if used alone, but using all three
combinations reduced the probability of a random match to 5 × 10−5. Polymorphic information content (PIC), resolving power (Rp) and marker index (MI) of each primer combination failed to correlate significantly with the number of genotypes resolved.
Jaccard’s similarity coefficients ranged from 0.31 to 0.78. Fifteen cultivars were grouped by four UPGMA-clusters supported
by bootstrapping values larger than 0.70. The grouping pattern was similar to the grouping generated by principal coordinate
analysis. The results demonstrated that AFLP-based fingerprints can be used to identify unequivocally sesame genotypes, which
is needed for cultivar identification and for the assessment of the genetic variability of breeding stocks. We recommend to
use the number of cultivars identified by a primer combination instead of PIC, Rp and MI; and to calculate the maximal, instead of average probability of identical match by chance in the assessment of the
informativeness of a marker for cultivar identification. 相似文献
19.
Asako Kobayashi Kaworu Ebana Shuichi Fukuoka Tsukasa Nagamine 《Genetic Resources and Crop Evolution》2006,53(3):499-506
Landraces of rice (Oryza sativa L.) are valuable sources of genetic variation that have been lost in advanced cultivars. Seeds of a rice landrace stored
for almost 100 years were found on Sado Island in Niigata prefecture, Japan. This report aims to present basic data on the
genetic variation of this landrace, which was known as ‘Echizen’. Five samples of ‘Echizen’, consisting of two old samples,
one sample maintained on farm, and two lines regenerated from old seeds were compared with other advanced cultivars and landraces
using 19 microsatellite markers. Among the five samples of Echizen, the two stored samples showed greater diversity than the
other samples. Cluster analysis based on the UPGMA method also showed that old Echizen was a diverse landrace that could cover
the genetic diversity of most Japanese rice cultivars. 相似文献
20.
Ten cpSCAR markers that show polymorphism in Prunus avium were used to fingerprint sweet cherry cultivars. The purpose of the study was also to contribute to identification and to
help determine their genetic interrelationships. Samples of ‘0900 Ziraat’, a superior Turkish variety, which were collected
in several locations all over Turkey, had identical cpSCAR patterns, and they resembled a common European haplotype, A. ‘Sweetheart’,
‘Summit’ and ‘Canada Giant’ and their haplotype are intermediate between the previously described haplotypes A and B, which
were originally found in Central and Eastern European sweet and wild cherries, and those from Northern Turkey, respectively.
The data therefore suggests a local maternal descent (within Europe and Asia Minor) of the cultivars analysed. Our results
show that chloroplast DNA analysis is a straightforward way to classify cherry cultivars. We compare our results to others
previously reported for sweet cherry cultivars, and conclude that cpSCAR diversity data could be considered for phylogenetic
studies in this group. 相似文献