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1.
Chinese rose (Rosa chinensis) is one of the most popular and widely cultivated flowers worldwide and has extremely high economic and ornamental value. In 2020 wilt disease on R. chinensis was discovered in Pukou District, Nanjing, Jiangsu Province, China. Fungal isolates were obtained from the stems of the rose. According to morphological characteristics and multilocus phylogenetic analyses with the sequences of the rDNA internal transcribed spacer (ITS), translation elongation factor 1-α gene (TEF1-α), and part of the RNA polymerase II gene (RPB2), the isolates YJ1 to YJ4 were determined as a new species of Fusarium solani species complex, and named as Fusarium rosicola sp. nov., which is hereby described and illustrated. Pathogenicity of the isolate YJ1 was verified by Koch's postulates. The fungus was determined as the pathogen causing rose vascular wilt. The isolate YJ1 was labelled with green fluorescent protein (GFP), and roots of R. chinensis were inoculated. The result showed that the fungus infected the vascular tissue of the host plants and caused withering of the above-ground parts, resulting in the death of the whole plant. The GFP-labelled pathogen was reisolated from the stems and foliage, proving that this is a newly emerged systemic disease on R. chinensis in the world.  相似文献   

2.
Rot diseases of hydroponically cultured leaf lettuce, coriander, and chervil were found in Chiba Prefecture, Japan. Stems and petioles of the three diseased plants became brown or black with a soft rot, and vascular parts of the stems became discolored. Seemingly similar fungi were isolated from the diseased plants. Pathogenicity of these fungal isolates to each plant was demonstrated by inoculation tests. The fungi were identified as Plectosphaerella pauciseptata based on morphological and cultural characters. This identification was supported by phylogenetic analysis with rDNA ITS1-5.8S-ITS2 regions. The diseases were named Plectosphaerella rot (Plectosphaerella huhai-byo in Japanese) of lettuce, coriander, and chervil.  相似文献   

3.
To analyze genetic relationships among Colletotrichum gloeosporioides isolates; 34 isolates were collected from strawberries all over Japan, but primarily from Chiba Prefecture, and 20 were isolated from hosts other than strawberry. These isolates were assayed for virulence on strawberries and subjected to a fingerprint (FP) analysis by repetitive extragenic palindromic-PCR. Most of the isolates that were highly virulent to strawberries had relatively similar FPs even though they were isolated from various host plants (strawberry, cyclamen, nipplefruit and Japanese pear) in different regions. A cluster analysis revealed that the highly virulent and the weakly virulent isolates tended to form individual clusters, indicating that the highly virulent strains of C. gloeosporioides, which were genetically close to isolates with similar FPs and distinguishable from the weakly virulent strains, were responsible for strawberry anthracnose in Japan.  相似文献   

4.
Poinsettia plants growing in ebb-and-flow irrigation systems developed wilting and root rot during the summer growing seasons of 2010 in Gifu Prefecture and 2011 in Aichi Prefecture. Pythium species were isolated from roots with rot symptoms. The isolates were identified as P. helicoides and P. myriotylum on the basis of morphological characteristics and sequence homologies in the rDNA internal transcribed spacer regions. In pathogenicity tests, these isolates caused severe wilting and root rot. This is the first report of poinsettia root rot disease caused by P. helicoides and P. myriotylum, although P. aphanidermatum was reported as a pathogen of poinsettia root rot. To better understand these diseases, we performed an epidemiological study of three high-temperature-tolerant Pythium species, P. aphanidermatum, P. helicoides and P. myriotylum. Disease incidence as a percentage of diseased plants was greatest at 35 °C for all three species. Disease severity using the rating scale of root rot was also highest at 35 °C, particularly with high zoospore inoculum densities (100.0 zoospores/mL). Although the disease incidence and severity were reduced at lower temperatures, the three Pythium species were able to cause disease at temperatures as low as 20 °C.  相似文献   

5.
Calonectria pseudonaviculata, the causal agent of the disease of Buxus spp. known as ‘box blight’, was first detected in the mid‐1990s in the UK and New Zealand. Since then, the geographic range of box blight has rapidly expanded to at least 21 countries throughout temperate regions of the world, causing significant losses in nurseries, gardens and wild boxwood populations. This study determined the genetic diversity in a collection of 234 Calonectria isolates from diseased Buxus plants, originating from 15 countries and four continents. Two genetic clades, G1 and G2, were identified within this sample using multilocus phylogenetic analysis. The application of genealogical concordance phylogenetic species recognition criteria using four independent nuclear loci determined that the Calonectria isolates in these two clades are separate phylogenetic species. The isolates in the G1 clade were upheld as C. pseudonaviculata sensu stricto. Based on phylogenetic distinctiveness and the lack of mating, a new species is proposed, Calonectria henricotiae sp. nov., for the Calonectria isolates in the G2 clade. A PCR‐RFLP assay and real‐time PCR assays were developed to easily and reproducibly differentiate these species. To assess the practical implications of the identification of the two species, their physiology, fungicide susceptibility and pathogenicity were compared. No differences in pathogenicity were observed. However, C. henricotiae isolates exhibited greater thermotolerance and reduced sensitivity to specific triazole as well as strobilurin fungicides. The identification of a second phylogenetic species causing box blight may have a substantial impact on the epidemiology and control of this destructive disease.  相似文献   

6.
Several Phytophthora spp. are known to cause a range of symptoms on citrus, resulting in significant crop losses worldwide. In South Africa, Phytophthora remains a destructive citrus disease, but the species and their distribution have not been well documented. A total of 162 Phytophthora isolates was collected from 60 citrus orchards in seven provinces of South Africa (Eastern Cape, Kwazulu-Natal, Limpopo, Mpumalanga, Northern Cape, North West and Western Cape). Isolates were identified to the species level through PCR-RFLP (restriction fragment length polymorphism) analyses of the internal transcribed spacer region. The identity of a subset of the isolates was confirmed using morphological and sequence analyses. Phytophthora nicotianae was the predominant species (76 % of isolates) and occurred in 80 % of the orchards in all of the provinces, followed by P. citrophthora (22 % of isolates in 28 % of orchards). The P. citrophthora isolates were further subdivided into two previously identified subgroups, G1 and G2, with most (69 %) of the isolates belonging to the G1 subgroup. Other Phytophthora species included P. multivora in the Western Cape Province, and an unknown species in the Eastern Cape Province with high sequence similarity (98 %) to a putative new species submitted to GenBank as Phytophthora taxon Sisuluriver. Phytophthora palmivora, a known citrus pathogen, was not identified. Most of the P. nicotianae isolates (79 %) were of the A1 mating type. The P. citrophthora isolates were mostly sterile (64 %), including most of the G1 isolates (81 %). The remaining G1 isolates (19 %) belonged to the A1 mating type, whereas almost all G2 isolates belonged to the A2 mating type except for one isolate that was sterile.  相似文献   

7.

Severe stunting and root rot were observed on alpine delphinium plants (Delphinium elatum) from Aomori Prefecture, Japan, in 2010 and 2011. A Phytophthora isolate from the diseased crown was identified as Phytophthora sp. kelmania based on morphological characteristics and DNA sequence data. Inoculation of alpine delphinium plants with the isolate produced a similar root rot. Pathogenicity of the isolate on four species of plants that are known hosts for P. sp. kelmania was confirmed. We propose the name “Phytophthora rot” (eki-byo in Japanese) for the present new disease on alpine delphinium.

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8.
During surveys conducted in 2010–2013, a complete breakage or bending of the trunk and a dry basal stem rot were observed on containerised Brahea armata, B. edulis, Howea forsteriana and Trachycarpus princeps plants in different nurseries located in eastern Sicily (southern Italy). A cylindrocarpon-like species was consistently obtained from diseased palm tissues, while known pathogens of these hosts such as Ganoderma, Phytophthora and Thielaviopsis were not found associated with symptomatic tissues or isolated on standard or selective media. A total of 40 cylindrocarpon-like isolates were collected and characterised based on morphology and DNA phylogeny. Multigene analyses based on the β-tubulin, histone H3, translation elongation factor 1-α, and the internal transcribed spacers (ITS1, 5.8S, ITS2) genes facilitated the identification of a new species, described here as Ilyonectria palmarum. The pathogenicity of one representative isolate collected from each palm species was tested on plants cultivated under nursery conditions and in a growth chamber. All isolates were pathogenic to B. armata, B. edulis, H. forsteriana, and T. princeps and symptoms identical to that observed in nurseries were reproduced. Dry basal stem rot and stem bending caused by Ilyonectria palmarum represents a potentially serious problem for nurseries cultivating containerised palms.  相似文献   

9.
A homothallic Phytophthora species was found to be consistently associated with a rot of mature fruits of two local cultivars of olive (Olea europaea) in Calabria, southern Italy. The phylogenetic analysis of sequences of the ITS1‐5.8S‐ITS2 region and cox1 gene enabled its identification as a new species of clade 2, with a basal position compared to previously described subclades. The new species is described formally with the epithet Phytophthora oleae, referring to the natural matrix from which it was isolated. A unique combination of molecular and morphological characters clearly separates P. oleae from other already described Phytophthora species. This new species produced semipapillate, occasionally bipapillate, persistent sporangia on simple sympodially branching sporangiophores as well as globose and smooth‐walled oogonia, paragynous antheridia and spherical, plerotic oospores. The pathogenicity of P. oleae was confirmed in inoculation trials on fruits of three olive cultivars, including the two local cultivars from which the pathogen had been isolated.  相似文献   

10.
Colletotrichum fungi belonging to the Colletotrichum gloeosporioides species complex include a number of economically important postharvest pathogens that often cause anthracnose. Until now, different species within this group could only be distinguished from one another reliably using multigenic phylogenetic analyses. Using a comparative genomics approach, we developed a marker that can differentiate Colletotrichum fructicola, Colletotrichum aenigma and Colletotrichum siamense within the C. gloeosporioides species complex based on PCR amplicon size differences. When we used this marker to classify 115 isolates collected over 20 years from strawberries in Chiba Prefecture, Japan, the isolates were predominantly C. fructicola. To our knowledge, this is the first report characterizing different species of Colletotrichum infecting strawberries in Japan and contributes to our understanding on the diversity of anthracnose pathogens in Japan.  相似文献   

11.
In 2007, lisianthus (Eustoma grandiflorum) plants with necrotic ringspots on the leaves were found in Kochi Prefecture, Japan. Tospovirus-like spherical enveloped particles with ca. 160 nm in diameter were observed with electron microscopy. The complete nucleotide sequence of the S RNA segment of the virus was determined, and phylogenetic analysis using deduced amino acid sequences of the nucleocapsid protein and the nonstructural S protein indicated that the virus is phylogenetically distinct from any known tospovirus species. The results suggest that the virus is a new member of the genus Tospovirus, in the family Bunyaviridae. The virus is the fifth distinct tospovirus occurring naturally in lisianthus in Japan. The necrotic symptoms were reproduced on lisianthus seedlings after mechanical inoculation. The host range of the virus isolate on several test plants was also examined.  相似文献   

12.
Biodiversity surveys of natural as well as agricultural ecosystems commonly reveal novel isolates. A new species, Pythium yorkensis sp. nov., is reported here, isolated from field soil during a survey of oomycete diversity in symptomless soybean across southeastern Pennsylvania. Molecular data from both mitochondrial and nuclear loci support a unique phylogenetic position for the isolates collected, and morphological features distinguish this new species from close relatives in Pythium clade J. Pathogenicity assays suggest that this new species may be a potential agricultural pathogen, as isolates were mildly aggressive on soybean. This study highlights the continued need for culture‐based surveys in collaboration with high‐throughput sequence‐based approaches for environmental sampling.  相似文献   

13.
Anguina obesa n. sp., a new species of the genus, causing small seed galls inside the ovaries of foxtail weed plants (Alopecurus mysuroides Huds.) is described and illustrated based on its morphological and molecular characters. The new species is characterized by its 1516–2564 μm long obese females irregularly ventrally curved after fixation, having six lines in lateral fields, 6–9 μm long stylet with well-developed rounded knobs, constriction at junction of isthmus with the pharyngeal bulb, monodelphic-prodelphic female reproductive system, and conical, 60–80 μm long tail. Males of the new species are characterized with their slender 936–1420 μm long body, 25–30 μm long tylenchoid spicules, and bursa not reaching tail tip. Second stage juveniles of the new species were also common inside the galls and also recovered from soil in type locality. The new species is morphologically close to Anguina agropyronifloris, A. amsinckiae, A. paludicola and A. tumefaciens, but is more closely related to A. paludicola, from which it can be separated based on differences in morphological characters and internal transcribed spacer sequence. In Bayesian inference using sequences of the aforementioned genomic fragment, the new species formed a clade with A. agrostis, A. funesta, A. graminis, A. phalaridis and some unidentified isolates, with robust Bayesian posterior probability (BPP). The morphologically closest species, A. paludicola, occupied a separate position, outside of the clade containing the new species. The sequences of two other genomic fragments, 18S and 28S rDNA (D2/D3 region) were also made available for the new species. Morphological comparisons of the new species with the related species are discussed.  相似文献   

14.
Since its first isolation from Salix roots in 1972, isolates of a sexually sterile Phytophthora species have been obtained frequently from wet or riparian habitats worldwide and have also been isolated from roots of Alnus and Prunus spp. Although originally assigned to Phytophthora gonapodyides on morphological grounds, it was recognized that these isolates, informally named P. taxon Salixsoil, might represent a separate lineage within ITS Clade 6. Based on phylogenetic analyses and comparisons of morphology, growth‐temperature relationships and pathogenicity, this taxon is formally described here as Phytophthora lacustris sp. nov. Isolates of P. lacustris form a clearly resolved cluster in both ITS and mitochondrial cox1 phylogenies, basal to most other Clade 6 taxa. Phytophthora lacustris shares several unusual behavioural properties with other aquatic Clade 6 species, such as sexual sterility and tolerance of high temperatures, that have been suggested as adaptations to riparian conditions. It appears to be widespread in Europe and has also been detected in Australia, New Zealand and the USA. It was shown to be weakly or moderately aggressive on inoculation to Alnus, Prunus and Salix. The extent of P. lacustris’ activity as a saprotroph in plant debris in water and as an opportunistic pathogen in riparian habitats needs further investigation. Its pathogenic potential to cultivated fruit trees also deserves attention because P. lacustris has apparently been introduced into the nursery trade.  相似文献   

15.
To identify 11 Phytophthora isolates obtained from lemon, peach and apple trees, and from strawberry plants, in the Mediterranean region of Turkey, protein, acetylesterase, peroxidase and catalose band patterns of these isolates and the same bands of 10 identified isolates of Phytophthora citrophthora, P. cinnamami and P. cactarum were compared. These 11 regional isolates were identified on the basis of the similarity of their protein and enzyme band patterns to those of identified Phytophthora isolates. It was concluded that protein band patterns could be used for identification of Phytophthora species. With enzyme band patterns, however, it may be possible to identify at species level but it is more practical to use this method only for identification of subspecies.  相似文献   

16.
Two new pathogens of pyrethrum, described as Paraphoma chlamydocopiosa and Paraphoma pye, isolated from necrotic leaf lesions on pyrethrum plants in northern Tasmania, Australia, were identified using morphological characters, phylogenetic analysis of the internal transcribed spacer (ITS), elongation factor 1‐α (EF1‐α) and β‐tubulin (TUB) genes, and pathogenicity bioassays. Bootstrap support in the combined and individual gene region phylogenetic trees supported the two species that were significantly different from the closely related P. chrysanthemicola and P. vinacea. Morphological characteristics also supported the two new species, with conidia of P. chlamydocopiosa being considerably longer and wider than either P. chrysanthemicola or P. vinacea, and P. pye being distinct in forming bilocular pycnidia. Glasshouse pathogenicity tests based on root dip inoculation resulted in P. chlamydocopiosa and P. pye infecting the crown and upper root tissues of pyrethrum plants, and significant reduction in biomass 2 months after inoculation. Both of these Paraphoma species caused leaf lesions during in vitro and in vivo bioassays 2 weeks after foliar spray inoculation. Although P. chlamydocopiosa and P. pye were shown to be crown rot pathogens, they were also commonly isolated from leaves of diseased plants in pyrethrum fields of northern Tasmania.  相似文献   

17.
A new homothallic Phytophthora species, isolated from rhizosphere soil and roots of declining or dead Rubus anglocandicans (European blackberry) in south-west Western Australia, is described as Phytophthora bilorbang sp. nov. It produces non-papillate sporangia, smooth-walled oogonia containing thick-walled oospores, and paragynous antheridia. Although morphologically similar to several species within ITS Clade 6 and sub-clade II, namely P. gibbosa, P. gregata and P. megasperma, phylogenetic analyses of the ITS, cox1, HSP90, BT and NADH gene regions demonstrate that P. bilorbang sp. nov. is a distinct species. Additionally, P. bilorbang differs from these species in its growth and colony morphology on several media. Pathogenicity tests indicate that P. bilorbang could be responsible for the decline syndrome of blackberry within the Warren and Donnelly River catchments in the south-west of Western Australia.  相似文献   

18.
Invasive Phytophthora species are responsible for severe tree diseases in many forest ecosystems in Europe. In Hungary, the symptoms were first noted when P. alni infection led to a serious decline and mortality of alder stands in the late 1990s. Between 2001 and 2009, over 300 soilborne Phytophthora isolates were collected from declining broadleaf forests in Hungary, and 10 Phytophthora species identified based on morphological traits and the molecular characteristics of the internally transcribed spacer (ITS) regions of the nuclear ribosomal DNA. The most diverse species spectrum, found in diseased alder stands, included P. gonapodyides, P. gregata, P. inundata, P. lacustris, P. megasperma, P. plurivora, one informally designated taxon: P. taxon hungarica, and one unnamed species P. sp.1. P. cactorum and P. plurivora isolates were prevalent in the soil of a declining eastern black walnut forest, and three species, P. gonapodyides, P. multivora and P. plurivora were recovered from a declining oak stand. More than one ITS-based genotype was identified for four species, including six genotypes for P. gonapodyides, and two each for P. cactorum, P. plurivora and P. inundata. The high genetic diversity of the P. gonapodyides isolates may indicate that the species is indigenous to the region. In contrast, the frequently recovered, widely distributed P. lacustris with a single ITS genotype may represent a recent colonizer. The P. multivora isolates are, to date, the first reported from a European native forest.  相似文献   

19.
An unknown Phytophthora species was discovered in the central Peruvian Andes on blighted foliage of the native South American plant species Urera lacineata. Urera is a genus of native flowering shrubs in the nettle family Urticaceae. This new taxon Phytophthora urerae sp. nov. is herewith formally described based on extensive morphological analysis, phylogenetic analysis of nuclear and mitochondrial loci, and AFLP analysis. Phytophthora urerae sp. nov. is a close relative of the Irish famine pathogen, Phytophthora infestans, and only the third clade 1c taxon described from South America to date. In contrast to the clade 1c taxon Phytophthora andina, first described in South America as a hybrid, P. urerae does not appear to be a hybrid based on cloning and sequencing nuclear loci. Findings of new species in South America may provide novel insights into the origin and evolutionary history of clade 1c Phytophthora species.  相似文献   

20.
The purpose of this research was to identify the pathogens causing root and crown rot in major pomegranate-growing areas of Iran. Infected tissue samples were collected from trees with symptoms from 49 pomegranate orchards in four provinces of Iran: Fars, Markazi, Isfahan, and Kohgiluyeh va Boyer-Ahmad. In total, 23 Phytophthora spp. isolates were obtained, which were identified as P. cryptogea species complex (12 isolates) and P. cinnamomi (11 isolates) based on morphological characters. Molecular confirmation of identification was performed by inference of phylogeny of ITS-rDNA regions, β-tubulin gene, and the mitochondrial gene cytochrome c oxidase subunit 1. The results of our phylogenetic analysis confirmed the morphological identification of P. cinnamomi isolates and placed them in Clade 7c of Phytophthora. In addition, the P. cryptogea species complex isolates, despite morphological similarities, were in fact four distinct species including P. cryptogea sensu stricto (two isolates), P. pseudocryptogea (one isolate), P. sp. kelmania (one isolate), and P. erythroseptica (six isolates). This is the first report of pomegranate root and crown rot caused by P. cinnamomi and P. cryptogea species complex.  相似文献   

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