共查询到20条相似文献，搜索用时 109 毫秒
1.
Haitham G. Abo-Al-Ela Mohammed Abu El-Magd Abeer F. El-Nahas Ali A. Mansour 《Tropical animal health and production》2014,46(6):947-952
Insulin-like growth factor 2 (IGF2) plays an important role in muscle growth and it might be used as a marker for the growth traits selection strategies in farm animals. The objectives of this study were to detect polymorphisms in exon 10 of IGF2 and to determine associations between these polymorphisms and growth traits in Egyptian water buffalo. PCR-single-strand conformation polymorphism (SSCP) and DNA sequencing methods were used to detect any prospective polymorphism. A novel single nucleotide polymorphism (SNP), C287A, was detected. It was a non-synonymous mutation and led to replacement of glutamine (Q) amino acid (aa) by histidine (H) aa. Three different SSCP patterns were observed: AA, AC, and CC, with frequencies of 0.540, 0.325, and 0.135, respectively. Association analyses revealed that the AA individuals had a higher average daily gain (ADG) than other individuals (CC and AC) from birth to 9 months of age. We conclude that the AA genotype in C287A SNP in the exon 10 of the IGF2 gene is associated with the ADG during the age from birth to 9 months and could be used as a potential genetic marker for selection of growth traits in Egyptian buffalo. 相似文献
2.
PU Lei YUE Jing-wei ZHANG Jin-shan LIU Xin WANG Li-gang YAN Hua HOU Xin-hua GAO Hong-mei ZHANG Tian ZHANG Yue-bo WU Qun-qing ZHANG Long-chao WANG Li-xian 《中国畜牧兽医》2016,43(11):2982-2988
This study was aimed to analyze the association of four SNPs of MAP3K5 gene with growth and feed efficiency related traits in Duroc populations. Four SNPs(Ssc1:30769583 A>C;Ssc1:30781169 A>G;Ssc1:30940839 A>G;Ssc1:30962276 G>A)of MAP3K5 gene in Duroc populations were obtained by porcine SNP60 BeadChip（Illumina). The genotype frequency and allele frequency of four SNPs of MAP3K5 gene were analyzed,the result showed that four SNPs were the low-moderate mutation SNPs.The polymorphism of MAP3K5 gene and its association with feed efficiency related traits in Duroc population were analyzed. The results indicated that CC genotype individuals in Ssc1:30769583 A>C had significant lower RFI（133.08 g/d）than AA genotype individuals（P<0.05);GG genotype individuals in Ssc1:30781169 A>G had significant lower RFI（116.18 g/d）and ADFI（0.23 kg/d）than AG genotype individuals（P<0.05);GG genotype individuals in Ssc1:30940839 A>G had significant lower FCR（0.10%）than AG genotype individuals（P<0.05);AA genotype individual in Ssc1:30962276 G>A had significant lower ADG（0.04 kg/d）than GG genotype individuals（P<0.05). All in all,the results suggested that four SNPs polymorphisms of MAP3K5 gene had the significant impact on RFI, ADFI, FCR and ADG traits in Duroc pigs. 相似文献
3.
本研究旨在检测水牛二酰甘油酰基转移酶2（diacylglycerolacylt-ransferase,DGAT2）基因的单核苷酸多态性（SNP）,探究摩拉水牛多态性位点的群体遗传特征。以广西水牛研究所的57头摩拉水牛为材料,PCR扩增DGAT2基因的部分序列（外显子2及内含子2、3）,通过常规测序法检测其SNP,并运用遗传多样性分析软件（POPGENE）和SPSS软件对群体的多态性位点进行基因频率、基因型频率、多态信息含量（PIC）、有效等位基因数（Ne）及遗传杂合度（He）的检测。结果表明,在摩拉水牛DGAT2基因外显子2和内含子2、3上共发现了9个SNPs位点（IVS2.54 G > A、IVS2.158 A > G、EVS2.191 A > G、EVS2.228 A > G、IVS3.311 C > T、IVS3.444 A > G、IVS3.451 A > C、IVS3.466 C > T、IVS3.521 C > T）,其中EVS2.191 A > G位点的突变导致氨基酸由异亮氨酸突变为缬氨酸,突变位点间存在一定程度的连锁遗传但接近连锁平衡状态。从基因频率上看,IVS2.158 A > G、EVS2.191 A > G、IVS3.311 C > T、IVS3.451 A > C、IVS3.466 C > T和IVS3.521 C > T 6个SNPs位点的两个等位基因频率有较大差异,提示等位基因频率较大的基因个体可能更适合生存。9个SNPs位点在摩拉水牛品种上多处于高度多态,杂合度在0.1744~0.4975之间,说明摩拉水牛群体中DGAT2基因遗传多态性丰富,具有较大的育种价值和性状改良潜力。 相似文献
4.
PANG Chun-ying DENG Ting-xian LU Xing-rong ZHU Peng DUAN An-qin LIANG Xian-wei 《中国畜牧兽医》2016,43(9):2418-2424
This study was aimed to detect the polymorphisms of Leptin gene in buffalo that provided a fundamental for further study on marker assisted breeding in buffaloes.The single nuclease polymorphisms (SNP) of Leptin gene were identified and genotyped by using DNA pooled sequencing and high-resolution melting (HRM) method in three buffalo breeds with 182 buffalo individuals,respectively.The results showed that seven SNPs of Leptin gene were identified in studied population that were located in the intron 1,intron 2 and exon 3 regions,respectively.All the SNPs loci were moderate polymorphism except for the SNP5 and SNP6.The χ2-test indicated that all the SNPs loci were in agreement with Hardy-Weinberg equilibrium in Nili-Ravi population (P>0.05).Our findings revealed that seven SNPs of Leptin gene in buffalo were identified and genotyped in population,which provide the data support for further analyzing the associations between these polymorphism and production traits in buffaloes. 相似文献
5.
试验旨在检测水牛瘦素（Leptin）基因序列的多态性,为进一步开展水牛标记辅助育种研究奠定基础。运用DNA混合池结合直接测序及高分辨熔解曲线（HRM）法在182头奶水牛个体中进行Leptin基因SNP位点的筛选和分型。结果表明,在试验群体中Leptin基因共发现7个SNPs,位于内含子1、内含子3和外显子3区域,分别是A3123G、A3776G、A4154G、A5228G、A5524C、G5573T和A5751C。除了SNP5和SNP6位点在尼里－拉菲水牛群体中的多态信息含量（PIC）属于低度多态之外,所有SNPs位点在3个水牛群体中均属于中度多态。经χ2检验,所有SNPs位点的突变在尼里－拉菲水牛群体均达到Hardy-Weinberg平衡状态（P>0.05）。本研究成功筛查7个水牛Leptin基因SNPs位点并进行了基因分型,为下一步开展奶水牛Leptin基因的标记－性状关联分析奠定基础。 相似文献
6.
L. Fontanesi L. Buttazzoni G. Galimberti D.G. Calò E. Scotti V. Russo 《Livestock Science》2013,157(1):48-56
Melanocortin 4 receptor (MC4R) plays a key role in controlling energy homeostasis. Several studies have already reported effects on production traits of polymorphisms identified in the porcine MC4R gene. In this study we analysed data on 6 MC4R polymorphisms (c.-780C>G; c.-135C>T; c.175C>T; c.707G>A or p.Arg236His; and c.892G>A or p.Asp298Asn; c.?430A>T) genotyped from (1) two groups of Italian Large White pigs (280+280 animals) with extreme estimated breeding values (EBVs) for back fat thickness (BFT), selected among a performance tested population of about 12,000 pigs, and from (2) 19 Italian Duroc pigs. Two haplotypes, differentiated by the c.892G>A, were identified in the Duroc populations. Four haplotypes were identified in the Italian Large White population, one of which (haplotype 4) was identified for the first time in this study. Single marker and haplotype association analyses for BFT were obtained by comparing allele and haplotype frequency differences from the two extreme tails using χ2 and Cochran–Armitage trend tests. Results confirmed the effects of the c.892G>A single nucleotide polymorphism (SNP) on BFT, as also defined by different distributions in the two tails of haplotypes carrying the alternative nucleotides at this polymorphic site (P<0.01). In addition different distributions of haplotype 4 in the two extreme groups suggested that it might affect the same trait (P<0.10). Association analyses for several other traits (average daily gain, ADG; feed gain ratio, FGR; weight of lean cuts; ham weight) were carried out by using EBVs and Random Residuals: significant effects (P<0.05) were only found for the p.Asp298Asn mutation on ADG and FGR. Results did not support any relevant effect of the p.Arg236His mutation on any trait. Data reported in this study contribute to better understand the role of MC4R variants in affecting production traits in pigs, a prerequisite to consider polymorphisms in this gene for marker assisted selection. 相似文献
7.
试验旨在探讨PRKAA2基因在摩拉水牛群体中的遗传多态性及其与生长性状的关联性,进而得到显著相关的遗传标记,为摩拉水牛的分子标记辅助选择提供理论依据。利用DNA测序法等技术进行候选基因PRKAA2外显子4及部分内含子3单核苷酸多态性（SNPs）检测,并采用生物信息学方法结合统计软件分析PRKAA2基因与摩拉水牛生长性状的关联性。结果显示,摩拉水牛PRKAA2基因中共检测到4个SNPs位点：c.462 G>A、IVS3.557 T>C、IVS3.560 C>T和IVS3.565 G>A,均包含3种基因型,且符合Hardy-Weinberg平衡。4个SNPs位点在水牛群体中均为中度多态,可以构建3种单倍型,T-C-G-G为优势单倍型,其中IVS3.560 C>T与c.462 G>A位点之间存在完全连锁不平衡,关联分析结果显示,单倍型H2与摩拉水牛体斜长和腰角宽呈显著相关（P<0.05）。c.462 G>A位点与摩拉水牛体高、十字部高、尻长、坐骨端宽和腰角宽呈显著相关,其中GG和AA基因型个体的体高和十字部高均显著高于GA基因型个体,GG基因型个体的尻长显著高于GA和AA基因型个体,AA基因型个体的坐骨端宽和腰角宽显著高于GA基因型个体（P<0.05）;IVS3.557 T>C位点与摩拉水牛的生长性状指标未达到显著相关（P>0.05）;IVS3.560 C>T位点与摩拉水牛体高、十字部高和尻长呈显著相关,其中CC和TT基因型个体的体高和十字部高均显著高于CT基因型个体,CC基因型个体的尻长显著高于CT基因型个体（P<0.05）;IVS3.565 G>A位点与体斜长呈显著相关,其中GG和GA基因型个体的体斜长显著高于AA基因型个体（P<0.05）。综上,PRKAA2基因的c.462 G>A、IVS3.560 C>T和IVS3.565 G>A位点对摩拉水牛部分生长性状均有显著影响,可作为摩拉水牛品种早期选育的候选基因和分子辅助标记。 相似文献
8.
研究利用PCR-SSCP技术对大白、长白和杜洛克猪EPHA1基因外显子多态性及其与产仔数的关系进行了研究。结果表明:在第15外显子上检测到一个发生G→C颠换的突变位点,形成3种基因型。对于大白猪,3~6胎的GG型个体的产活仔数(NBA)比CC型个体高出1.66头(P<0.05);在所有胎次中,GG型个体的总产仔数(TNB)比CC型个体高出0.2头(P<0.01)。对于长白猪,第2胎GG型个体的TNB和NBA分别比CC型个体高出1.41头(P<0.05)和1.46头(P<0.05);所有胎次中,GC型个体TNB比CC型个体高出0.67头(P<0.05)。对于杜洛克猪,3种基因型个体的TNB和NBA差异不显著(P>0.05)。对于试验大白猪群体而言,该多态位点GG基因型可作为TNB性状的标记基因型。 相似文献
9.
Resistance to bovine spongiform encephalopathy (BSE) that is significantly associated with insertion/deletion (indel) polymorphisms at two loci (putative promoter and intron 1) on the prion protein gene (PRNP) in cattle has been well documented. Studies suggest that the insertion alleles are related to BSE resistance. Until recently, BSE has never been reported in water buffaloes (unlike cattle). Previous studies have demonstrated that the PRNP gene in water buffalo consists mostly of insertion alleles at both loci; nevertheless, whether or not water buffaloes are genetically resistant to BSE and the role of indel polymorphisms in their resistance status is not clear. We examined the coding region of PRNP to determine the nucleotide and octapeptide-repeat (octarepeats) variations of Anatolian, Murrah and Murrah × Anatolian (M?×?A) water buffaloes. Three synonymous single nucleotide polymorphisms (SNP) at positions 126, 234, and 285, and a non-synonymous SNP at position 322 (G108S) were detected. Triplet G/A/T base substitutions were observed at position 126 and two additional genotypes, T/A and T/G, at this position were determined. We also found six octarepeats that indicated the presence of the wild-type PRNP6 allele in the coding region. To the best of our knowledge, this is the first report of the T/A and T/G genotypes in water buffaloes. 相似文献
10.
N Arunmozhi SK Singh T Sarath SK Agarwal A Doiphode U Shankar 《Reproduction in domestic animals》2014,49(5):E56-E59
Buffaloes are known for their productivity as compared to average yielding cows due to higher fat percentage, better feed conversion ability and disease resistance. On the other hand, the reproductive performances of buffaloes are often considered as poor owing to late sexual maturity, weak/silent oestrus, repeat breeder and prolonged intercalving interval. The study of cascade of events during oestrus and oestrous cycle can be useful for the improvement of reproductive efficiency of buffaloes. More precisely, the hormonal changes initiated at the molecular level within the animal determine the reproductive nature of the species. Nucleotide/protein sequence analysis serves as a vital tool in analysing the binding of the hormones for their effect or functions. In this study, we have reported cloning and characterization of the complete coding (cDNA) sequence of oxytocin receptor gene (OXTR) in buffaloes. Buffalo OXTR gene contains an uninterrupted ORF of 1176 nucleotides corresponding to an inferred polypeptide length of 391 amino acids (aa). The molecular weight of the deduced aa sequence was found to be 43 kDa with an isoelectric point of 9.253 and 16.328 charge at pH 7.0. The deduced protein sequence consists of 38 strongly basic (+) (K,R), 22 strongly acidic (?) (D,E), 186 hydrophobic (A, I, L, F, W, V) and 95 Polar (N, C, Q, S, T, Y) aa. Results indicated that aspartate (D) at aa position 85 and D, R and C at aa positions 136, 137 and 138, respectively, are conserved in buffaloes. The buffalo OXTR gene shared a per cent similarity ranging from 84.7 to 98.1 and 88.5 to 97.7 at nucleotide and deduced aa sequence levels, respectively, with that of other species. Phylogram constructed on the basis of either nucleotide or deduced aa sequences of buffalo OXTR gene showed that buffalo, cattle and sheep have diverged from human and swine and formed a separate clad. The buffalo sequence has shown maximum similarity and closeness with cattle followed by sheep both at nucleotide and at aa level. 相似文献
11.
为研究水牛蛋白激酶AMP活化的催化亚基α2（protein kinase AMP-activated catalytic subunit alpha 2,PRKAA2）基因多态性,本试验以摩拉水牛和尼里-拉菲水牛基因组DNA为模板,扩增PRKAA2基因外显子4及内含子3部分序列,通过常规测序法检测其SNP并进行遗传多样性分析。结果发现,PRKAA2基因外显子4内存在1个SNP位点（c.462 G>A）,PRKAA2基因内含子3部分序列存在3个SNPs位点（IVS3.557 T>C、IVS3.560 C>T和IVS3.565 G>A）。经遗传多样性分析表明,在c.462 G>A位点的野生纯合型和杂合型比突变纯合型更有优势,IVS3.557 T>C和IVS3.560 C>T位点的突变纯合型为非优势基因型,IVS3.565 G>A位点杂合型为优势基因型。IVS3.565 G>A位点在摩拉水牛群体中处于Hardy-Weinberg非平衡状态;c.462 G>A位点在尼里-拉菲水牛群体中处于Hardy-Weinberg非平衡状态。4个SNPs位点在摩拉水牛群体中均为中度多态;c.462 G>A、IVS3.557 T>C位点在尼里-拉菲水牛群体中为低度多态,IVS3.560 C>T、IVS3.565 G>A位点为中度多态。IVS3.557 T>C位点在两个水牛群体中杂合度较低。说明摩拉水牛IVS3.565 G>A位点和尼里-拉菲水牛c.462 G>A位点的基因型频率和基因频率遗传状态不平衡,尼里-拉菲水牛群体中IVS3.557 T>C位点遗传变异小,选择潜力不高。4个多态位点可以构建5种单倍型,其中T-C-G-G是摩拉水牛群体和尼里-拉菲水牛群体的优势单倍型。综上,本研究检测的摩拉水牛和尼里-拉菲水牛PRKAA2基因上4个SNPs位点可为水牛标记辅助选择育种提供参考。 相似文献
12.
Lumpy skin disease (LSD) is an endemic highly infectious viral disease affecting cattle in Egypt. This study aimed to identify and characterize the LSD virus (LSDV) outbreaks in Egypt between 2016 and 2018 and to determine the role of Egyptian buffaloes in the epidemiology of LSD. A total of 44 skin biopsies (41 from cattle and 3 from buffaloes) and 31 blood samples from asymptomatic buffaloes in contact with clinically infected cattle were collected from 7 Egyptian governorates and tested by real-time (rt)-PCR. The positive samples were further isolated, and the isolates were analyzed by conventional PCR to amplify the LSDV001 and LSDV002 genes; three isolates were sequenced, and the phylogenetic tree was constructed. In addition, 198 serum samples (102 from cattle and 96 from contact buffaloes) were examined using ELISA. Out of 44 skin nodules analyzed by rt-PCR, 31 (70.45 %) were positive while, non of the buffalo samples were positive. Out of 31 positive rt-PCR samples, LSDV was isolated on CAM (n=19; 61.29%) and MDBK cell culture. The virus isolates were confirmed by conventional PCR where 1237 bp product size was successfully amplified. The phylogenetic analysis of LSDV002 gene revealed that three sequenced LSDV isolates were identical to each other and to LSDV isolates from different countries in Africa, Asia, and Europe with 99–100 % identity. ELISA analyses showed seroreactivity of LSDV in Egyptian cattle and buffaloes. In conclusion, the Egyptian water buffalo serves as an accidental non-adapted host for the disease and this point requires more deep investigation. In addition, the current vaccine strategy should be re-evaluated for more coverage and effectiveness. 相似文献
13.
Sequence and topological characterization of Toll-like receptor 8 gene of Indian riverine buffalo (Bubalus bubalis) 总被引：1，自引：1，他引：0
Praveen Kumar Dubey Shubham Goyal Jigyasa Aggarwal Suresh Kumar Gahlawat Periasamy Kathiravan Bishnu Prasad Mishra Ranjit Singh Kataria 《Tropical animal health and production》2012,45(1):91-99
In this study, buffalo (Bubalus bubalis) Toll-like receptor 8 (TLR8) gene has been characterized by sequence analysis and detecting polymorphism. Complete ORF of buffalo TLR8 gene was amplified using the RNA isolated from spleen tissue, which was found to be 3,102 nucleotides long encoding a 1,033 amino acid protein. Buffalo TLR8 had 10 nucleotide changes as compared to other livestock species resulting in six unique amino acid changes, four of them lying within leucine-rich repeat (LRR) domains. As compared to cattle (Bos indicus and Bos taurus), out of fifteen cysteine residues, fourteen were conserved and Cys at position 521 was replaced by Arg. Nine of the LRR domains had no amino acid change as compared to cattle, whereas LRR-C-terminus had maximum, five amino acid changes. Sequence characterization of 12 riverine and swamp buffaloes revealed presence of four polymorphic nucleotides, two of them were non-synonymous, one synonymous and one site in 3′UTR. PCR-RFLP genotyping of non-synonymous SNP 2758A>G (ILeu920Val) in Toll–interleukin-1 receptor domain of 463 swamp and riverine buffaloes showed a higher frequency of allele A in swamp (95 %) as compared to riverine (9.84 %) buffaloes. 相似文献
14.
【目的】研究水牛主要促进因子超家族成员2a(major facilitator superfamily domain containing 2a, MFSD2A)基因多态性,并筛选与水牛产奶性状相关联的SNP。【方法】采集383头健康水牛血液DNA,利用PCR扩增和Sequenom MassARRAY飞行时间质谱技术对SNP位点进行筛选及基因型检测,并进行遗传多样性、连锁不平衡(LD)和单倍型分析,以及对不同基因型和单倍型与水牛产奶性状进行关联分析。【结果】在水牛MFSD2A基因中检出7个SNPs位点,多态信息含量(PIC)均在0.25～0.40之间,属于中度多态,除g.8290 T>C位点外,其余位点均处于Hardy-Weinberg平衡状态(P>0.05);关联分析结果表明,这7个SNPs位点与305 d产奶量均显著关联(P<0.05),且突变杂合子基因型的305 d产奶量是3种基因型中最低的,g.568 C>G和g.701 A>G位点与乳脂率显著关联(P<0.05),乳脂率从大到小依次为突变纯合子>野生纯合子>突变杂合子,g.568... 相似文献
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16.
【目的】研究骨形态发生蛋白受体Ⅱ(bone morphogenetic protein receptorⅡ,BMPRⅡ)基因多态性及其单倍型与藏羊产羔性状的相关性。【方法】以433只藏羊母羊为研究对象,采用改良多重高温连接酶检测反应技术(improved multiple ligase detection reaction, iMLDR)对BMPRⅡ基因9个单核苷酸多态性(single nucleotide polymorphism, SNP)位点在藏羊群体中的多态性进行检测,使用Haploview 4.2软件分析其连锁不平衡性并构建单倍型,应用基因关联分析探究BMPRⅡ基因多态性及单倍型与藏羊产羔性状的关联。【结果】藏羊BMPRⅡ基因外显子12中存在6个SNPs,分别为:g.90192 T>C、g.142532 C>T、g.142614 A>G、g.142751 T>C、g.143138 A>G和g.143189 G>A,外显子3、9和13中各存在1个SNP,分别为:g.143570 C>G、g.124843 A>C和g.145233 ... 相似文献
17.
DENG Ting-xian PANG Chun-ying ZHU Peng DUAN An-qin LU Xing-rong YANG Bing-zhuang LIANG Xian-wei 《中国畜牧兽医》2015,42(7):1800-1806
The study used matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF-MS) for rapid determination of single nucleotide polymorphisms (SNPs) in buffalo MC4R gene,which provided a foundation for constructing the marker-assisted selection(MAS)strategy.The cDNA sequence of buffalo MC4R gene was screened rapidly based on PCR amplification and sequencing method,and in which 13 SNPs were found.To further identify the reliability of screening system,8 SNPs were genotyped in 380 buffaloes using the MALDI-TOF-MS technology.The results revealed that 8 SNPs had an average of 98.0% in call rate,and in which three genotypes could be accurately distinguished.The average minor allele frequency (MAF),average heterozygosity and polymorphism information content (PIC) value of the 8 markers was 0.24,0.28 and 0.23,respectively.Our findings indicated that the rapid determination method of MALDI-TOF-MS with PCR and sequencing with highly accurate properties was a useful tool for identifying the SNPs of buffalo MC4R gene that laid the foundations for studying SNP genotype in buffalo genes associated production traits. 相似文献
18.
应用基质辅助激光解吸电离飞行时间质谱技术(MALDI-TOF-MS)检测水牛黑素皮质素受体4(MC4R)基因的多态性(SNPs),为今后建立水牛辅助标记选择策略奠定基础。以水牛MC4R基因序列为模板,利用PCR扩增测序法筛查了水牛MC4R基因13个SNPs。为进一步验证筛选的可靠性,应用MALDI-TOF-MS针对380头水牛检测了8个标记的基因型。结果显示,平均检出率为98.0%,能够准确的检测出3种常见的基因型。所检SNP位点的平均最小等位基因频率(MAF)为0.24,平均杂合度为0.28,平均多态信息含量(PIC)为0.23。本研究建立的基于PCR测序法联合MALDI-TOF-MS检测水牛MC4R基因多态性的方法,具有快速、可靠和准确的特点,为今后开展水牛生产性状基因的SNP分型和检测等研究奠定了基础。 相似文献
19.
【目的】 研究中国草原红牛丙酮酸脱氢酶激酶4（pyruvate dehydrogenase kinase 4，PDK4）基因多态性与肉质性状的关系。【方法】 挑选120头中国草原红牛为研究对象，采用Sanger测序法检测PDK4基因第1~11外显子的单核苷酸多态性（SNP）位点，分析SNP位点的基因型频率、基因频率及群体遗传参数等。利用SPSS 21.0软件对中国草原红牛PDK4基因SNP位点多态性与肉质性状（熟肉率、肉嫩度、失水率、pH、滴水损失、肌内脂肪含量、初水分含量、蛋白质含量）进行关联分析。【结果】 在中国草原红牛PDK4基因外显子8和外显子11上共检测到3个SNPs；PDK4基因第8外显子57 bp处存在1个SNP位点（G57C），且引起编码氨基酸的改变，存在GG、GC和CC 3种基因型；PDK4基因第11外显子在330和389 bp处存在2个SNPs位点（G330T和C389T），在G330T位点上存在GG、GT和TT 3种基因型；在C389T位点上存在CC、CT和TT 3种基因型。卡方适合性检验结果显示，中国草原红牛第8外显子G57C位点偏离Hardy-Weinberg平衡状态（P<0.05），第11外显子的G330T和C398T符合Hardy-Weinberg平衡状态（P>0.05）；群体遗传参数分析发现，第8外显子G57C突变位点属于低度多态性位点（PIC<0.25），等位基因数为1.1429，表明其在中国草原红牛中的变异较小；第11外显子G330T和C398T属于中度多态性位点（0.25<PIC<0.5），等位基因数分别为1.6431和1.6447，说明该遗传标记能够提供遗传信息。关联分析结果表明，PDK4基因第8外显子中G57C位点GG和CC基因型个体肌内脂肪含量显著高于GC基因型（P<0.05）；第11外显子G330T位点GG基因型滴水损失和初水分量显著高于GT基因型（P<0.05）；GG基因型肉嫩度显著高于TT基因型（P<0.05）；GT基因型肌内脂肪含量显著高于TT基因型（P<0.05），C389T处CT基因型失水率显著低于TT基因型（P<0.05）。【结论】 PDK4基因多态性与中国草原红牛肉质性状相关，可作为肉质性状的候选基因。 相似文献
20.
试验旨在研究MAP3K5基因多态性与杜洛克猪生长、饲料利用性状的关联性。利用Illumina SNP60芯片测序结果比较发现了MAP3K5基因的4个SNPs位点（Ssc1：30769583 A>C;Ssc1：30781169 A>G;Ssc1：30940839 A>G;Ssc1：30962276 G>A）。统计获得MAP3K5基因的4个SNPs位点的基因型频率及等位基因频率,发现4个SNPs为低度－中度的多态突变位点。对MAP3K5基因多态性与生长、饲料利用性状的关联性进行分析,结果表明,杜洛克猪Ssc1：30769583 A>C位点CC基因型个体与AA基因型个体相比剩余采食量（RFI）性状降低了133.08 g/d（P<0.05）;Ssc1：30781169 A>G位点的GG基因型个体与AG基因型个体相比RFI性状降低了116.18 g/d（P<0.05）,ADFI性状降低了0.23 kg/d（P<0.05）;Ssc1：30940839 A>G位点的GG基因型个体与AG基因型个体相比饲料转化率（FCR）性状降低了0.10%（P<0.05）;Ssc1：30962276 G>A位点的AA基因型个体与GG基因型个体相比ADG性状降低了0.04 kg/d（P<0.05）。试验初步认为MAP3K5基因4个SNPs位点的多态性对杜洛克猪的RFI、ADFI、FCR和ADG具有一定影响。 相似文献