共查询到20条相似文献，搜索用时 31 毫秒
1.
This study was designed to examine whether or not specific tree species (Picea glauca, Picea mariana, Pinus banksiana, Populus tremuloides), their post-fire stand age, or their position in a successional pathway had any significant effect on the functional diversity of associated soil microbial communities in a typical mixed boreal forest ecosystem (Duck Mountain Provincial Forest, Manitoba, Canada). Multivariate analyses designed to identify significant biotic and/or abiotic variables associated with patterns of organic substrate utilization (assessed using the BIOLOG™ System) revealed the overall similarity in substrate utilization by the soil microbial communities. The five clusters identified differed mainly by their substrate-utilization value rather than by specific substrate utilization. Variability in community functional diversity was not strongly associated to tree species or post-fire stand age; however, redundancy analysis indicated a stronger association between substrate utilization and successional pathway and soil pH. For example, microbial communities associated with the relatively high pH soils of the P. tremuloides-P. glauca successional pathway, exhibited a greater degree of substrate utilization than those associated with the P. banksiana-P. mariana successional pathway and more acidic soils. Differences in functional diversity specific to tree species were not observed and this may have reflected the mixed nature of the forest stands and of their heterogeneous forest floor. In a densely treed, mixed boreal forest ecosystem, great overlap in tree and understory species occur making it difficult to assign a definitive microbial community to any particular tree species. The presence of P. tremuloides in all stand types and post fire stand ages has probably contributed to the large amount of overlap in utilization profiles among soil samples. 相似文献
2.
This study investigated the possible effects of tree species diversity and identity on the soil microbial community in a species-rich temperate broad-leaved forest. For the first time, we separated the effects of tree identity and tree species diversity on the link between above and belowground communities in a near-natural forest. We established 100 tree clusters consisting of each three tree individuals represented by beech (Fagus sylvatica L.), ash (Fraxinus excelsior L.), hornbeam (Carpinus betulus L.), maple (Acer pseudoplatanus L.), or lime (Tilia spec.) at two different sites in the Hainich National Park (Thuringia, Germany). The tree clusters included one, two or three species forming a diversity gradient. We investigated the microbial community structure, using phospholipid fatty acid (PLFA) profiles, in mineral soil samples (0–10 cm) collected in the centre of each cluster.The lowest total PLFA amounts were found in the pure beech clusters (79.0 ± 23.5 nmol g−1 soil dw), the highest PLFA amounts existed in the pure ash clusters (287.3 ± 211.3 nmol g−1 soil dw). Using principle components analyses (PCA) and redundancy analyses (RDA), we found only for the variables ‘relative proportion of beech trees’ and ‘living lime fine root tips associated with ectomycorrhiza’ a significant effect on the PLFA composition. The microbial community structure was mainly determined by abiotic environmental parameters such as soil pH or clay content. The different species richness levels in the clusters did not significantly differ in their total PLFA amounts and their PLFA composition. We observed a tendency that the PLFA profiles of the microbial communities in more tree species-rich clusters were less influenced by individual PLFAs (more homogenous) than those from species-poor clusters.We concluded that tree species identity and site conditions were more important factors determining the soil microbial community structure than tree species diversity per se. 相似文献
3.
Harald Kellner Patricia Luis Bettina Zimdars Bärbel Kiesel François Buscot 《Soil biology & biochemistry》2008,40(3):638-648
Laccases- or laccase-like multicopper oxidases (LMCO) catalyze the oxidation of various substrates, such as phenols, diamines and metals, coupled with the reduction of molecular oxygen to water. Compared to studies on function and diversity of LMCO in plants and fungi, little is known about this enzyme type in bacteria and especially on their possible implication in degradation of organic matter in soils. This study presents a molecular investigation of the diversity and distribution of bacterial LMCO genes among three upper horizons of a forest Cambisol and in a grassland Cambisol. Some culture strains of soil bacteria were also analyzed at the molecular level and for their capability to oxidize naturally occurring 2,6-dimethoxyphenol, a LMCO substrate. A high LMCO gene diversity was found in the Cambisol soil samples with 16 distinct sequence type clades, of which approximately one half was not matching with any reference sequence of known bacteria. The highest richness of bacterial LMCO genes was observed in the organic horizon of the forest soil, which is concomitant with a previous analysis of the diversity of fungal laccase genes and corresponding soil laccase activity. Some clusters of sequence types showed a specific distribution in one of the soils or in horizons, while others appeared more ubiquist. Multiple bacterial LMCO genes were described in Agromyces salentinus and Sinorhizobium morelense, what so far was only known from fungi. 相似文献
4.
Plants host, environmental characteristics and dispersal limitation are the main factors affecting the diversity of arbuscular mycorrhizal fungi (AMF) in global scale, whereas at the local scale other factors might also influence the composition of the AMF community. Therefore, the objective of this study was to assess the diversity of AMF and to relate it with the richness of plant species, season (dry or rainy) and soil parameters along an environmental gradient to know which are the drivers of the spatial distribution of AMF in the Brazilian semiarid. The gradient was composed of a dry forest (DF), a transitional zone (TZ) and a moist forest (MF). Ten soil samples were collected during the rainy (August 2011) and dry (February 2012) seasons in each site. The soil properties were determined, as well as AMF diversity, the latter based on morphological spore identification. There were significant differences between the DF and the other two areas in most soil chemical parameters, whereas the majority of soil attributes in the MF and TZ were similar. Altogether, 50 AMF species were identified, and the genera Acaulospora and Glomus were predominant. The AMF community structure in DF was significantly different from the other two areas by ordination (NMDS) and statistical method (PERMANOVA). However, the highest species diversity, based on the Shannon index, occurred in the TZ. The AMF community structure differed between seasons, with greater spore abundance in the dry season. Spatial AMF distribution was influenced by plants host, season, but the soil was the main factor. Four edaphic attributes showed approximately 60% of correlation with AMF community composition (Zn, Mg, base saturation and clay) based on the BIO-ENV analysis. We conclude that vegetation, seasonal variations and soil type affect the AMF diversity, and that the latter is a key factor for the similarity/dissimilarity of AMF communities between areas in the Brazilian semiarid. 相似文献
5.
Are there real endogeic species in temperate forest mites? 总被引：3，自引：0，他引：3
The determinants of mite diversity in soil and the reasons why so many species co-exist are poorly understood. There is evidence that niche differentiation (i.e. microhabitat complexity) in the litter layers of forest floors is important, however, little is known for deeper horizons since mite density and diversity in deeper soil layers have been rarely studied. In order to address this dearth of information, we collected microarthropods from both the forest floor and the mineral soil to a depth of 1 m in two deciduous forest locations. The density exceeded 8×105 microarthropods m−2 in one location, and a number of individuals were collected from deep in the soil. No species was exclusively living in mineral horizons. Measurements of porosity spectrum, pH, water content, total C and total N were made at each depth and related to mite diversity and species richness. Meso- and microporosity were strongly correlated with species distribution while macroporosity and pH were correlated to density and species richness. 相似文献
6.
Bacterial communities living in forest soils contribute to the decomposition of organic matter and the recycling of nutrients in these ecosystems and form one of the most diverse habitats on Earth. Unfortunately, due to difficulty in culturing soil bacteria, the understanding of their ecology is still limited. In the case of temperate deciduous forests, soil microbial communities face large seasonal variations in environmental conditions, such as temperature or moisture. Moreover, the supply of nutrients also differs due to seasonal processes, such as the allocation of photosynthates into soil by the roots of primary producers or the seasonal input of fresh litter. The aim of this study was to reveal how the bacterial community responds to these seasonal processes in the litter and soil of a Quercus petraea forest. Bacterial communities from litter and from the organic and mineral horizons of soil were analyzed during the four seasons of the year by 16S rRNA gene pyrosequencing. The results revealed that the composition of the bacterial community is horizon specific. The litter horizon had a higher relative abundance of Proteobacteria and Bacteroidetes than soil, while the organic and mineral horizons had a higher abundance of Acidobacteria, Firmicutes and Actinobacteria than litter. Moreover, the bacterial community was significantly affected by seasonality in all horizons. Bacterial communities in the litter showed significant differences between the vegetation season (May and July) and the autumn and winter seasons (October, February). In mineral soil, bacterial community composition was specific in the summer, when it was significantly different from all other seasons, with a larger number of taxa described as rhizosphere and mycorrhizosphere inhabitants. The results indicate that litter decomposition is the main driver of bacterial community composition in litter horizon. In contrast to reports on fungal communities, bacterial community composition in mineral soil responds to the seasonal peaks of rhizodeposition in the summer. 相似文献
7.
In order to assess the diversity of culturable Burkholderia populations in rhizosphere and bulk soil and to evaluate how different agricultural management regimes and land use history affect this diversity, four treatments were evaluated: permanent grassland; grassland converted into maize monoculture; arable land and arable land converted into grassland. Burkholderia isolates obtained on PCAT medium were grouped in 47 clusters using 16S ribosomal RNA gene based PCR-DGGE combined with BOX genomic fingerprinting (DGGE-BOX). The distribution of the isolates in the DGGE-BOX clusters was used to calculate the Shannon diversity index per treatment. Interestingly, we observed that the Burkholderia diversity was affected by changes in the agricultural management, since the highest diversity was observed in permanent grassland and in continuous arable land. In addition, the diversity tended to be higher in the rhizosphere than in the corresponding bulk soil. The use of species abundance models indicated that rhizosphere communities had more even distributions than communities collected from the bulk soil. Identification of isolates revealed that only 2% of these belonged to the B. cepacia complex and that the majority was assigned to either (1) new Burkholderia species or (2) Burkholderia species that had originally been isolated from soil. Isolates classified as B. hospita, B. caledonica and Burkholderia sp. ‘LMG 22934’ and ‘LMG 22936’ were found mainly in the arable land, while isolates belonging to Burkholderia sp. ‘LMG 22929’ and B. phytofirmans were associated with the grassland area. Another potentially new Burkholderia species, ‘LMG 22932’, was found in both areas, in close association with the maize rhizosphere. 相似文献
8.
Serguei Koptsik Nataliya Berezina S. Livantsova 《Water, air, and soil pollution》2001,130(1-4):1025-1030
Variations in soil acidity and in biodiversity were analysed in the National Natural Park "Russian North", European Russia. Improving soil quality from podzol, podzolic soil, derno-podzolic soil, brown earth to pararendzina leads to increase in diversity and changes in floristical composition, followed by changing of pine and spruce forest to mixed and birch forests. In PCA ordination species diversity, richness and evenness of trees, shrubs and vascular plants are closely connected with each other, and are represented by the first principal component. They are strongly correlated to the thickness of Al horizon, pHH20 and pHCaC12 in organic, surface and subsurface mineral horizons. Only bryophyte species richness and diversity are directly related to the thickness and weight of organic horizon, soil exchangeable acidity, and inversely related to the thickness of Al horizon and pH. Thus, the ordination of the major species diversity variables is highly related to soil pH, suggesting that pH is the best soil related predictor of species diversity parameters. Our study shows that plants notably respond to soil acidification in boreal forest ecosystems. 相似文献
9.
Bergmann GT Bates ST Eilers KG Lauber CL Caporaso JG Walters WA Knight R Fierer N 《Soil biology & biochemistry》2011,43(7):1450-1455
Verrucomicrobia are ubiquitous in soil, but members of this bacterial phylum are thought to be present at low frequency in soil, with few studies focusing specifically on verrucomicrobial abundance, diversity, and distribution. Here we used barcoded pyrosequencing to analyze verrucomicrobial communities in surface soils collected across a range of biomes in Antarctica, Europe, and the Americas (112 samples), as well as soils collected from pits dug in a montane coniferous forest (69 samples). Data collected from surface horizons indicate that Verrucomicrobia average 23% of bacterial sequences, making them far more abundant than had been estimated. We show that this underestimation is likely due to primer bias, as many of the commonly used PCR primers appear to exclude verrucomicrobial 16S rRNA genes during amplification. Verrucomicrobia were detected in 180 out of 181 soils examined, with members of the class Spartobacteria dominating verrucomicrobial communities in nearly all biomes and soil depths. The relative abundance of Verrucomicrobia was highest in grasslands and in subsurface soil horizons, where they were often the dominant bacterial phylum. Although their ecology remains poorly understood, Verrucomicrobia appear to be dominant in many soil bacterial communities across the globe, making additional research on their ecology clearly necessary. 相似文献
10.
不同土壤类型下AM 真菌分布多样性及与土壤因子的关系 总被引：8，自引：3，他引：8
以禾本科植物群落为研究对象, 研究了宁夏六盘山林地、银川农耕地、暖泉农耕地、固原农耕地、盐池沙地、灵武沙地6 个采样地点5 种土壤类型(黑垆土、灌淤土、黄绵土、灰钙土、风沙土)下AM 真菌物种多样性及其与土壤因子的关系。结果表明: 5 种土壤类型采样点的植被根际土壤中共鉴定出5 属48 种AM真菌, 其中, 无梗囊霉属(Acaulospora)1 种, 巨孢囊霉属(Gigaspora)3 种, 球囊霉属(Glomus)37 种, 类球囊霉属(Paraglomus)1 种, 盾巨孢囊霉属(Scutellospora)6 种, 各采样点土壤均以球囊霉属为优势属。地球囊霉(G.geosporum)和木薯球囊霉(G. manihotis)是6 个采样地点中的优势种。不同土壤类型各采样点AM 真菌各属的频度存在明显差异, 球囊霉属在各点均有出现, 频度值最高。具有较高植被多样性的暖泉样点, AM 真菌的种属数量较多。土壤环境因子对AM 真菌孢子密度的影响因所处土壤、植被类型不同而异。pH、全盐、速效钾、速效磷等土壤肥力因子, 在PCA 轴上能最大程度地解释AM 真菌孢子密度与土壤环境因子之间相互关系的大部分信息。宁夏不同土壤类型区域中AM 真菌种类及分布一定程度上与该采样点的植被类型、植物多样性和土壤肥力特征相对应。 相似文献
11.
Soil macrofauna was surveyed in six sites characterised by different vegetation types on five occasions in the Western Ghats, India. Sampling sites included a primary forest, a weakly disturbed forest (slightly logged in the past), a highly disturbed forest (intensively logged), an Acacia auriculiformis plantation (8 years old), a pasture with high density of Phoenix humilis and a pasture without P. humilis. We showed that both land management and temporal variability induced significant changes in the soil macrofauna. Forest sites hosted larger densities of soil macroorganisms. The effect of seasons was apparent as some clear modifications in the fauna composition occurred. Some groups like earthworms mainly exhibited temporal variability whereas others like millipedes were chiefly affected by land management options. The seasonal rhythms of soil macrofauna were poorly expressed in the pasture plots and the Acacia plantation, but were particularly clear in the forest sites. This interaction between land management and temporal patterns may be explained by some changes in the species composition associated with certain land-uses. Our approach was based on a between-within classes PCA that proved particularly useful by providing statistical tests and a hierarchy of land management and temporal rhythm effects. 相似文献
12.
The role of tree diversity and identity as determinants of soil animal community structure is little understood. In a mature deciduous forest dominated by beech we identified clusters of one, two and three tree species of beech, ash and lime allowing to investigate the role of tree species diversity and identity on the density and community structure of oribatid mites. To relate oribatid mite community structure to environmental factors we measured leaf litter input, fine root biomass, mass of organic layers, topsoil pH and C and N content. We expected oribatid mite density to increase with increasing tree diversity, but we expected the effects of tree species identity to override effects of tree diversity. Further, we hypothesized the density of oribatid mites to be reduced by the presence of beech but increased by the presence of lime and ash. As expected tree diversity little affected oribatid mite communities, whereas tree species identity strongly altered density and community structure of oribatid mites. However, in contrast to our expectations the density of oribatid mites was highest in presence of beech indicating that many oribatid mite species benefit from the presence of recalcitrant litter forming thick organic layers. Especially Oppioidea benefited from the presence of beech presumably due to an increased availability of food resources such as fungi and nematodes. Lower density of oribatid mites in monospecific clusters of lime and ash suggests that oribatid mites did not benefit from high quality litter of these species. Notably, large and strongly sclerotized oribatid mite species, such as Steganacarus magnus and Chamobates voigtsi, benefited from the presence of ash and lime. Presumably, these large species better resist harsh microclimatic conditions in shallow organic layers. 相似文献
13.
S. Kurzmeier T. Wiedemann P. Biber P. Schad P. V. Krasilnikov 《Eurasian Soil Science》2012,45(8):740-751
Two sites with similar environmental parameters, except for the edaphic factor, were selected in the mountainous tropical forest of southern Mexico. Site 1 was established on an Alisol; site 2, on a Phaeozem. Representative soil profiles were examined on each of the sites, and topsoil was sampled on a regular grid pattern. The soil of site 2 was richer in organic matter and major nutrients and had a less acid reaction than the soil of site 1. The species diversity of the trees at site 2 (30 species) was higher than that at site 1 (17 species). The species compositions of the trees were different on the two soils: there were only six species in common for both sites. The coefficients of species similarity on the sites were low. We concluded that the presence of different soils within the same type of forest ecosystem increases its ??-diversity. The examination of edaphic preferences of the species showed that Alstonia longifolia and Thouinidium decandrum preferred rich soils, Inga punctata and Ocotea sinuata preferred poor soils, and Cupania dentata and Hamelia patens did not display preferences in the studied range of soil properties. Thus, the spatial variability of the soil properties affect the spatial pattern of tree species in the studied tropical forest ecosystems. 相似文献
14.
The impact of long-term heavy grazing pressure on montane vegetation and soils was investigated on the Carneddau plateau in North Wales. At this site, historical information suggests that formerly extensive Racomitrium- and Vaccinium-dominated heaths have become degraded and reduced in extent over the last 40-50 years. This coincides with a period when both sheep numbers and atmospheric deposition of nitrogen have greatly increased. Vegetation composition, plant tissue chemistry, soil chemistry and sheep presence were compared between areas of ‘good’ condition Racomitrium and Vaccinium heath and degraded areas. Comparison of species composition data with sheep presence and environmental data showed no significant link between current grazing distribution and species composition in the areas investigated, with all habitats having sheep presence above the recommended maximum for this habitat. Soil chemistry showed several differences between degraded and ‘good’ condition habitats, suggesting that degraded areas had experienced loss of soil organic matter and upper organic horizons. Comparison of soil and vegetation nitrogen content with data from other UK sites suggests a build up of nitrogen has occurred in Carneddau vegetation and soils, possibly related to high levels of nitrogen deposition. It is concluded that restoration of severely degraded areas of montane vegetation may be retarded by deleterious changes in soil properties which could slow recolonisation by montane species. Reductions in stocking density aiming to restore montane communities might have more immediate impact on less degraded areas. 相似文献
15.
16.
Mycelial fungi in a solonchakous chestnut soil, a sulfate solonchak, and a soda solonchak were studied in the western Lake Baikal basin. The humus content, the degree of salinization, and the composition of salts affected the structure of the micromycete communities. In the chestnut soil, more than half of the species identified were found. The species diversity was higher in the nonsaline and humus horizons. The eolian deposit on the soda solonchak was characterized by the presence of six species of fungi that did not occur in other soil horizons. Their occurrence in the fresh deposit seems to be related to the eolian transfer of fungi with the fine earth from the adjacent areas with the nonsaline soils. The soda solonchak fungi are dominated by the haloalkalitolerant and alkalophilic micromycetes, among which the representatives of the Acremonium (A. antarcticum and A. rutilum) and Verticillum genera and Mycelia sterilia were identified. There was also an alkalophilic ascomycete, which is an indicator of soda salinization??Heleococcum alkalinum. On the whole, the soda solonchak had the lowest number of fungal germs and the lowest species diversity of mycelial fungi among the soils compared. 相似文献
17.
Spatial variations in nutrient concentrations and turnover may contribute to variations in productivity within forest ecosystems and be responsible for creating and maintaining diversity of plant species. The aim of this study was to relate spatial patterns in soil nutrient availability and microbial properties in the forest floor and mineral soil in order to explore the controls on variations in nutrient availability in the two horizons. Microbial C, N and P, extractable N and P, and plant-available nutrients as estimated by plant root simulator probes were measured. We then used geostatistical techniques to determine the scale of spatial autocorrelation in the forest floor and mineral soil. Several of the measured variables were spatially autocorrelated at a scale of tens to hundreds of meters. Although more variables were autocorrelated in the mineral soil than in the forest floor, spatial patterns in gravimetric moisture content and nutrient concentrations in the two horizons generally overlapped. The spatial patterns were probably caused by differences in topography, except for ammonium whose shorter range of spatial autocorrelation may reflect variations in nitrogen content of the canopy. 相似文献
18.
Endalkachew Wolde-meskel Zewdu Terefework Åsa Frostegård 《Soil biology & biochemistry》2004,36(12):2013-2025
The diversity of 110 rhizobial strains isolated from Acacia abyssinica, A. seyal, A. tortilis, Faidherbia albida, Sesbania sesban, Phaseolus vulgaris, and Vigna unguiculata grown in soils across diverse agro-ecological zones in southern Ethiopia was assessed using the Biolog™ system and amplified fragment length polymorphism (AFLP) fingerprinting technique. By cluster analysis of the metabolic and genomic fingerprints, the test strains were grouped into 13 Biolog and 11 AFLP clusters. Twenty-two strains in the Biolog method and 15 strains in the AFLP analysis were linked to eight and four reference species, respectively, out of the 28 included in the study. Most of the test strains (more than 80% of 110) were not related to any of the reference species by both methods. Forty-six test strains (42% of 110) were grouped into seven corresponding Biolog and AFLP clusters, suggesting that these groups represented the same strains, or in some cases clonal descendants of the same organisms. In contrast to the strains from S. sesban, isolates from Acacia spp. were represented in several Biolog and AFLP clusters indicating the promiscuous nature of the latter and widespread occurrence of compatible rhizobia in most of the soil sampling locations. The results showed that indigenous rhizobia nodulating native woody species in Ethiopian soils constituted metabolically and genomically diverse groups that are not linked to reference species. 相似文献
19.
P.O. Salonius 《Soil biology & biochemistry》1983,15(2):199-203
Microbial populations from dried, remoistened and undried forest organic horizons were allowed to thoroughly recolonize sterilized forest organic horizons; oxygen uptake was followed during recolonization. Microbial damage due to air drying was in the order litter (L) > fermentation (F) > humus (H). Species diversity, as indicated by diminished O2 uptake, was reduced in all horizons which had been air dried, with greatest damage in the litter horizon. Samples of these forest organic soil materials, designated for the study of microbially driven processes, should not be air dried. 相似文献
20.
Knowledge of the origin, evolution and weathering of Pampean soils is still limited. There are few prior studies of silicophytoliths, even though they could be important pedogenetic indicators that provide information about the role of amorphous silica in the reestablishment of soil structure. The aim of this work is to determine the silicophytolith content in Typical Argiudolls of the Pampean Plain, Argentina, its relation with vegetal cover and its effect on pedogenesis. We worked in three plots with different vegetal cover: grasses and shelter-belt plantations of Acacia melanoxylon – Celtis tala and Eucalyptus globulus – Celtis tala. In the study area, morphological characterization and particle size distribution analysis of soils were completed, and pH and organic matter content were determined. The heavy liquid separation was realized with sodium polytungstate (δ = 2.3 g/cm3) and an average of around 500 mineral grains were counted under optical microscope for the quali-quantitative analysis. There were no differences between profiles with respect to their morphological properties, organic matter content and particle size distribution, except for the higher organic horizon development of the forest plots as compared with the grass plot. The silicophytolith content was higher in the forest plots than in the grass one; within each profile, this fraction content decreased from the surface (63–40%) to the subsurface levels (23–5%) of soils. This decrease parallels the pieces of amorphous silica (< 7.5 μm) distribution in all plots analyzed. Afforestation over the past 50 years does not affect either the morphological or the physico-chemical properties of soils. These forest species, through the organic horizons, preserve soil conditions, which insures a higher representativity of silicophytoliths in comparison with the grass plot. 相似文献