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1.
由腐皮镰刀菌(Fusarium solani)引起的生姜枯萎病是一种毁灭性真菌土传病害,其病原菌的快速高效检测,有助于枯萎病的早期诊断及预警。通过回接试验、形态学观测以及系统进化树分析,对湖北生姜产区分离的菌株进行鉴定,获得生姜腐皮镰刀菌(F. solani)。基于镰刀菌属通用引物TEF-1αF/TEF-1αR基因序列,以腐皮镰刀菌基因组DNA为模板进行扩增测序,根据序列信息设计筛选出一对腐皮镰刀菌特异性引物,构建了基于普通PCR的快速高效分子检测方法,并对接种过病菌的生姜植株和土壤进行检测验证。通过病原菌的菌落形态、孢子显微结构观察、真菌通用引物ITS1/ITS4鉴定和致病性测定,确定引起生姜枯萎病的病原菌为腐皮镰刀菌(F. solani)。用设计的特异性引物F8/R8进行PCR,特异扩增获得约381 bp的目标条带,检测灵敏度为454 pg·μL-1,利用该引物对带菌生姜幼苗和土壤进行检测验证,证实可从发病生姜幼苗和带菌土壤中特异性检测到腐皮镰刀菌(F. solani)。本研究明确了引起湖北生姜枯萎病的病原菌为腐皮镰刀菌(F. solani),并建立了PCR快速检测方法。该检测方法简便、灵敏、高效,可用于生姜枯萎病的早期诊断与预防。 相似文献
2.
甘薯细菌性茎腐病是由达旦提狄克氏菌(Dickeya dadantii)引起的一种检疫性病害,近年来在我国多地发生,严重威胁我国甘薯产业的发展。建立特异灵敏的检测D. dadantii的方法对于鉴定检疫病原菌、田间监测病原菌和防控病害有重要意义。本研究对Dickeya属菌株的全基因组序列进行比较基因组学分析,筛选到D. dadantii特有的标志基因,针对标志基因设计引物,其中针对编码登录号为WP_077245517未知蛋白基因的1对引物Dad1-F(5′-CATATCAACCAGACCAGCCGTT-3′)和Dad1-R(5′-CGGCCTGCTTTTAAACAACGTATTA-3′)能只从D. dadantii扩增到167 bp目的片段。由此建立了特异灵敏的常规PCR和实时荧光定量PCR检测D. dadantii的方法,为鉴定检疫甘薯茎腐病病原菌和田间监测病害提供了有效方法。 相似文献
3.
甘薯细菌性茎腐病是由达旦提狄克氏菌(Dickeya dadantii)引起的一种检疫性病害,近年来在我国多地发生,严重威胁我国甘薯产业的发展。建立特异灵敏的检测D. dadantii的方法对于鉴定检疫病原菌、田间监测病原菌和防控病害有重要意义。本研究对Dickeya属菌株的全基因组序列进行比较基因组学分析,筛选到D. dadantii特有的标志基因,针对标志基因设计引物,其中针对编码登录号为WP_077245517未知蛋白基因的1对引物Dad1-F(5′-CATATCAACCAGACCAGCCGTT-3′)和Dad1-R(5′-CGGCCTGCTTTTAAACAACGTATTA-3′)能只从D. dadantii扩增到167 bp目的片段。由此建立了特异灵敏的常规PCR和实时荧光定量PCR检测D. dadantii的方法,为鉴定检疫甘薯茎腐病病原菌和田间监测病害提供了有效方法。 相似文献
4.
百合鳞茎斑点病病原菌鉴定 总被引：7，自引：0，他引：7
1991年在浙江湖州市和杭州市采集得百合(Lilium brownii F. E. Brown var. viridulum Baker)鳞茎有褐色斑点的标本104份,分离出纯菌株108个。鉴定为2个镰刀菌种:Fusarium solani(Mart.)Sacc. 和F. oxysporum Schlecht. F. solani出现频率84.3%,占优势.田间调查和接种试验证明F.solani是百合鳞茎褐色斑点病主要致病菌。在20种植物上接种试验结果表明:F.solani对百合有专化性,因此鉴定其病原菌为茄病镰孢一个新专化型:Fusarium solajni f. sp.lilii Wang. 相似文献
5.
应用等位基因特异性PCR(allele-specific PCR,AS-PCR)技术,建立了大豆猝死综合症(sudden death syndrome of soybean,SDS)病原菌北美种Fusarium virguliforme与其近似种Fusarium phaseoli(菜豆根腐病菌)的鉴别方法。针对翻译延长因子(EF-1α)基因上的3个SNP(单核苷酸多态性)位点,参照引物设计原则和等位基因特异引物(allele-specific primer,ASP)的要求设计了1对引物Fsg-α-1/2,能特异地扩增F.virguliforme,产生327 bp的电泳条带。另外,根据ITS区序列设计了1对通用引物Fu1/2,能扩增F.virguliforme和F.phaseoli,产生452 bp的电泳条带。本实验在传统的AS-PCR基础上进行改进,引入Fu1/2作为阳性质控引物,将ASP的特异性与双重PCR的严谨性相结合,建立了简便可靠的SDS病原菌鉴定方法。 相似文献
6.
AM真菌和镰刀菌对西瓜根系膜脂过氧化作用和膜透性的影响 总被引：5，自引：0，他引：5
在温室盆栽条件下研究了丛枝菌根(arbuscular mycorrhiza,AM)真菌Glomus versiforme (Karsten) Berch和西瓜枯萎镰刀菌(Fusarium oxysporum f. sp. niveum)对西瓜根系中膜脂过氧化产物丙二醛(MDA)含量和细胞膜透性的影响。结果表明,接种AM真菌的西瓜根系中MDA含量、组织自动氧化速率和膜透性均低于对照,先接种G. versiforme,后接种F. oxysporum f. sp. niveum处理的MDA含量、组织自动氧化速率和细胞膜透性均低于只接种F. oxysporum f. sp. niveum的处理。接种G. versiforme感枯萎病西瓜品种"郑杂5号"MDA含量、组织自动氧化速率和膜透性降低幅度大于抗病品种"京欣1号"的接种处理,说明G. versiforme可降低感病西瓜品种的膜透性和MDA的产生,从而有效地保护细胞膜系统,减轻F. oxysporum f. sp. niveum对西瓜的为害程度。 相似文献
7.
连作导致枯萎病等土传病害发生日益严重,已成为我国黄瓜生产的重要限制因素。采用化学防治和农业措施防治土传根部病害,操作都较为困难,迫切需要开发环境友好的生物防治技术。本研究从森林土壤分离鉴定一株短密木霉菌株BF06,通过对峙培养发现该菌株可以附着和缠绕病原菌的菌丝,对引起黄瓜枯萎病、茎基腐病、菌核病、根腐病和疫病的病原菌Fusarium oxysporum f. sp. cucumerinum,Rhizoctonia solani,Sclerotinia sclerotiorum,F. solani f. sp. cucurbitae,and Phytophthora cryptogea具有较强的拮抗作用。温室盆栽试验发现短密木霉菌株BF06可以迅速附着定殖于黄瓜根部表面,对上述5种黄瓜根部病害的防效达60%以上,对黄瓜枯萎病和茎基腐病的防效分别为90.4和88.8%。此外,利用植物组织培养基培养观察发现BF06显著地促进幼苗黄瓜侧根的形成和生长。本研究的结果表明短密木霉菌株BF06是一种可以有效防治黄瓜根部病害的新生防资源。 相似文献
8.
9.
2014~2016年,由于栽培管理及重茬等原因,大白菜枯萎病在我国大面积发生,造成了巨大的经济损失。为了明确引起大白菜枯萎病的病原菌,本课题组从山东、内蒙古、河北、甘肃等大白菜主产区采集了具有典型枯萎病症状的病样,并对样品中的病原菌进行了分离和鉴定。形态学鉴定结果表明:分离物分别具有尖孢镰刀菌 (Fusarium oxysporum)、茄病镰刀菌 (F. solani) 和木贼镰刀菌 (F. equiseti)的形态学特征。柯赫氏法则验证结果表明:3种病原菌均能使大白菜发病,且发病症状与田间症状一致。此外,基于病原菌的rDNA-ITS和mt SSU序列的测序比对,3种病原菌与尖孢镰刀菌、茄病镰刀菌和木贼镰刀菌的同源性分别达99%~100%,这与形态学鉴定结果相一致。尖孢镰刀菌引起白菜枯萎病为国内首次报道,而茄病镰刀菌和木贼镰刀菌引起白菜枯萎病为国内外首次报道。 相似文献
10.
河北廊坊大豆枯萎病病原镰刀菌的分子鉴定 总被引：1，自引：0，他引：1
为明确河北廊坊中国农科院植保所试验基地大豆孢囊线虫病田内大豆枯萎病病原镰刀菌的种类,对362份罹病枯萎大豆植株进行病原真菌分离,得到335株真菌;使用镰刀菌通用引物鉴定出镰刀菌(Fusarium spp.) 279株,占分离菌株83.3%;镰刀菌特异性引物、测序等分子生物学技术结合形态学特征进一步鉴定镰刀菌种类,鉴定出尖孢镰刀菌(F. oxysporum)189株,占分离菌株56.4%;茄病镰刀菌(F. solani)67株占20.0%、禾谷镰刀菌(F. graminearum)16株占4.8%、木贼镰刀菌(F. equiseti)3株、层出镰刀菌(F. proliferaum)2株、燕麦镰刀菌(F. avenaceum)和厚孢镰刀菌(F. chlamydosporum)各1株;致病性测试结果表明数量最多的尖孢镰刀菌(F. oxysporum)中约92.8%菌株具有不同程度的致病力;这些结果表明该试验基地大豆枯萎病的优势病原菌为尖孢镰刀菌(F. oxysporum);研究结果可为大豆枯萎病的防治提供科学依据,并为大豆孢囊线虫与尖孢镰刀菌复合侵染大豆的研究奠定基础。 相似文献
11.
ABSTRACT Fusarium wilt of lettuce, caused worldwide by Fusarium oxysporum f. sp. lactucae, is an emerging seed-transmitted disease on Lactuca sativa. In order to develop a molecular diagnostic tool for identifying race 1 (VCG0300) of the pathogen on vegetable samples, an effective technique is presented. Inter-retrotransposon amplified polymorphism polymerase chain reaction (PCR), a technique based on the amplification of genomic regions between long terminal repeats, was applied. It was shown to be useful for grouping F. oxysporum f. sp. lactucae race 1 isolates. Inter-retrotransposon sequence-characterized amplified regions (IR-SCAR) was used to develop a specific set of PCR primers to be utilized for differentiating F. oxysporum f. sp. lactucae isolates from other F. oxysporum isolates. The specific primers were able to uniquely amplify fungal genomic DNA from race 1 isolates obtained in Italy, Portugal, the United States, Japan, and Taiwan. The primers also were specific to pathogen DNA obtained from artificially infected lettuce seed and naturally and artificially infected plants. 相似文献
12.
In a 4-year disease survey in commercial spinach fields, pathogens were isolated from spinach root pieces placed on selective agar media. Aphanomyces cladogamus was the most abundant pathogen, followed by Phytophthora. cryptogea and Fusarium oxysporum. Rhizoctonia solani was found only occasionally. Other pathogens isolated were F. redolens, F. sambucinum and Cylindrocarpon destructans. P. cryptogea was the most severe pathogen, causing death of most plants, but A. cladogamus also caused severe root damage. Isolates of F. oxysporum ranged from highly pathogenic, i.e. P. oxysporum f.sp. spinaciae race 1. to moderately pathogenic and non-pathogenic, Rhizoctonia solani isolates also varied widely in their pathogenicity. Only a small number of the F. redotens and F. sambucinum isolates were pathogenic and most C. destructans isolates were weakly pathogenic. Isolation frequencies were relatively stable from year to year, but P. cryptogea was isolated more frequently in autumn than in spring. No clear relationships were found between pathogen prevalence and disease severity index of surveyed field plants, between pathogen prevalence and plant developmental stage, or between prevalence of the different pathogens isolated. 相似文献
13.
瓜黑星病菌、枯萎病菌和蔓枯病菌的三重PCR检测 总被引：2，自引：0，他引：2
通过测定黄瓜黑星病菌(Cladosporium cucumerinum)rDNA的ITS序列,比对近缘种及瓜类几种重要病原菌的ITS序列,设计出特异性引物HX-1/HX-2,经过对引物HX-1/HX-2PCR条件的优化,可以扩增出1条190bp的黄瓜黑星病菌特异性DNA条带,灵敏度达到1pg/μL。进一步将引物HX-1/HX-2和瓜类枯萎病菌、瓜类蔓枯病菌特异检测引物Fn-1/Fn-2、Mn-1/Mn-2组合,建立三重PCR体系,可一次检测出瓜类黑星病菌、瓜类枯萎病菌、瓜类蔓枯病菌3种瓜类植物重要的病原菌。建立了可以应用于田间瓜类黑星病菌PCR检测技术和瓜类主要病害三重PCR检测技术,对瓜类病害的诊断和防治具有重要的指导作用。 相似文献
14.
A polymerase chain reaction (PCR)-based method was developed to detect DNA of Fusarium solani f. sp. glycines , the cause of soybean sudden death syndrome. Two pairs of primers, Fsg1/Fsg2 designed from the mitochondrial small subunit ribosomal RNA gene, and FsgEF1/FsgEF2 designed from the translation elongation factor 1-α gene, produced PCR products of 438 and 237 bp, respectively. Primer specificity was tested with DNA from 82 F. solani f. sp. glycines , 55 F. solani non-SDS isolates, 43 isolates of 17 soybean fungal pathogens and the oomycete Phytophthora sojae , and soybean. The sensitivity of primer Fsg1/Fsg2 was 10 pg while that of FsgEF1/FsgEF2 was 1 ng when using F. solani f. sp. glycines total genomic DNA or down to 103 macroconidia g−1 soil. Nested PCR increased the sensitivity of the PCR assay 1000-fold to 10 fg using primers Fsg1/Fsg2, and 1 pg using primers FsgEF1/FsgEF2. F. solani f. sp. glycines DNA was detected in field-grown soybean roots and soil by PCR using either single pairs of primers or the combination of two pairs of primers. The occurrence of F. solani f. sp. glycines was determined using nested PCR for 47 soil samples collected from soybean fields in 20 counties of Illinois in 1999. F. solani f. sp. glycines was detected in soil samples from all five Illinois Agricultural Statistic Districts including 100, 89, 50, 92 and 50% of the samples from East, Central, North-east and West Districts, respectively. 相似文献
15.
ABSTRACT Specific primers and polymerase chain reaction (PCR) assays that identify Fusarium oxysporum f. sp. ciceris and each of the F. oxysporum f. sp. ciceris pathogenic races 0, 1A, 5, and 6 were developed. F. oxysporum f. sp. ciceris- and race-specific random amplified polymorphic DNA (RAPD) markers identified in a previous study were cloned and sequenced, and sequence characterized amplified region (SCAR) primers for specific PCR were developed. Each cloned RAPD marker was characterized by Southern hybridization analysis of Eco RI-digested genomic DNA of a subset of F. oxysporum f. sp. ciceris and nonpathogenic F. oxysporum isolates. All except two cloned RAPD markers consisted of DNA sequences that were found highly repetitive in the genome of all F. oxysporum f. sp. ciceris races. F. oxysporum f. sp. ciceris isolates representing eight reported races from a wide geographic range, nonpathogenic F. oxysporum isolates, isolates of F. oxysporum f. spp. lycopersici, melonis, niveum, phaseoli, and pisi, and isolates of 47 different Fusarium spp. were tested using the SCAR markers developed. The specific primer pairs amplified a single 1,503-bp product from all F. oxysporum f. sp. ciceris isolates; and single 900- and 1,000-bp products were selectively amplified from race 0 and race 6 isolates, respectively. The specificity of these amplifications was confirmed by hybridization analysis of the PCR products. A race 5-specific identification assay was developed using a touchdown-PCR procedure. A joint use of race 0- and race 6-specific SCAR primers in a single-PCR reaction together with a PCR assay using the race 6-specific primer pair correctly identified race 1A isolates for which no RAPD marker had been found previously. All the PCR assays described herein detected up to 0.1 ng of fungal genomic DNA. The specific SCAR primers and PCR assays developed in this study clearly identify and differentiate isolates of F. oxysporum f. sp. ciceris and of each of its pathogenic races 0, 1A, 5, and 6. 相似文献
16.
Detection of Fusarium oxysporum f.sp. vasinfectum in cotton tissue by polymerase chain reaction 总被引：2，自引：0，他引：2
A polymerase chain reaction assay was developed for the detection of Fusarium oxysporum f.sp. vasinfectum (FOV), a serious wilt pathogen of cotton in many parts of the world. Based on small nucleotide differences in internal transcribed spacer sequences between 18S, 5.8S and 28S ribosomal DNAs, primers Fov1 (5'-CCCCTGTGAACATACCTTACT-3') and Fov 2 (5'-ACCAGTAACGAGGGTTTTACT-3') were selected. These primers unambiguously amplified a 400-bp DNA fragment of all the FOV isolates tested (from Angola, Brazil, China and the USA) but did not amplify any other isolates of mycoflora associated with cotton, such as F. moniliforme , Verticillium albo-atrum , V. dahliae , Aspergillus sp., F. oxysporum , F. sambucinum or F. solani . A control PCR assay was developed employing the universal primer pair ITS1 and ITS2 which amplified a fragment of approximately 220 bp from all isolates tested. This control assay demonstrated that all fungal DNAs were readily amplifiable, thus confirming that the lack of amplification with Fov1 and Fov2 primers was a result of primer specificity and not of other possible causes, such as DNA degradation or the presence of PCR inhibitors. The assay was effective on samples from the stems, leaves, roots and calli, and from plant tissues both with and without symptoms. This detection system proved to be accurate and sensitive and could aid not only diagnosis but also disease monitoring and forecasting. 相似文献
17.
Ying-Hong Lin Jing-Yi Chang En-Tzu Liu Chih-Ping Chao Jenn-Wen Huang Pi-Fang Linda Chang 《European journal of plant pathology / European Foundation for Plant Pathology》2009,123(3):353-365
Fusarium oxysporum f. sp. cubense is the causal agent of Panama disease of banana. A rapid and reliable diagnosis is the foundation of integrated disease management
practices in commodity crops. For this diagnostic purpose, we have developed a reliable molecular method to detect Foc race
4 isolates in Taiwan. By PCR amplification, the primer set Foc-1/Foc-2 derived from the sequence of a random primer OP-A02
amplified fragment produced a 242 bp size DNA fragment which was specific to Foc race 4. With the optimized PCR parameters,
the molecular method was sensitive and could detect small quantities of Foc DNA as low as 10 pg in 50 to 2,000 ng host genomic
DNA with high efficiency. We also demonstrated that by using our PCR assay with Foc-1/Foc-2 primer set, Foc race 4 could be
easily distinguished from other Foc races 1 and 2, and separated other formae speciales of F. oxysporum.
Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users. 相似文献
18.
ABSTRACT Spongospora subterranea f. sp. subterranea causes powdery scab in potatoes and is distributed worldwide. Genetic studies of this pathogen have been hampered due, in part, to its obligate parasitism and the lack of molecular markers for this pathogen. In this investigation, a single cystosorus inoculation technique was developed to produce large amounts of S. subterranea f. sp. subterranea plasmodia or zoosporangia in eastern black nightshade (Solanum ptycanthum) roots from which DNA was extracted. Cryopreservation of zoosporangia was used for long-term storage of the isolates. S. subterranea f. sp. subterranea-specific restriction fragment length polymorphism (RFLP) markers were developed from randomly amplified polymorphic DNA (RAPD) fragments. Cystosori of S. subterranea f. sp. subterranea were used for RAPD assays and putative pathogen-specific RAPD fragments were cloned and sequenced. The fragments were screened for specificity by Southern hybridization and subsequent DNA sequence BLAST search. Four polymorphic S. subterranea f. sp. subterranea-specific probes containing repetitive elements, and one containing single copy DNA were identified. These RFLP probes were then used to analyze 24 single cystosorus isolates derived from eight geographic locations in the United States and Canada. Genetic variation was recorded among, but not within, geographic locations. Cluster analysis separated the isolates into two major groups: group I included isolates originating from western North America, with the exception of those from Colorado, and group II included isolates originating from eastern North America and from Colorado. The techniques developed in this study, i.e., production of single cystosorus isolates of S. subterranea f. sp. subterranea and development of RFLP markers for this pathogen, provide methods to further study the genetic structure of S. subterranea f. sp. subterranea. 相似文献
19.
The polymerase chain reaction (PCR) technique was utilized to obtain internal transcribed spacer ribosomal DNA (ITS rDNA) and small-subunit (18S) rDNA sequences from UK isolates of Spongospora subterranea f.sp. nasturtii , a plasmodiophorid pathogen of watercress ( Rorippa nasturtium-aquaticum ). ITS sequence data obtained from S. subterranea isolated from a range of UK sites were found to be identical. PCR primers were designed using these sequences and were shown to be capable of specific amplification of S. subterranea f.sp. nasturtii DNA from plant tissue and from water samples containing zoospores of the pathogen. As little as 5 ng total genomic DNA from infected plant material, or 1000 zoospores, was required for consistently successful amplification of DNA. A filtration-based method for obtaining pathogen DNA for PCR from watercress-bed water was developed. 相似文献
20.
Kazuhisa TSUDA Yoshitaka KOSAKA Seiji TSUGE Yasuyuki KUBO Osamu HORINO 《Journal of General Plant Pathology》2001,67(1):78-84
Six hundred sixty-three isolates of microorganisms, including fungi and bacteria, were collected from surface-sterilized roots
of spinach (Spinacia oleracea L.) growing in commercial greenhouses in Kyoto Prefecture. These isolates were screened for their ability to control Fusarium
wilt of spinach caused by Fusarium oxysporum f. sp. spinaciae. In primary screening, spinach seeds were treated with the isolates, sown in pots containing sterilized soil, and then challenge-inoculated
with the pathogen. Nine bacteria were effective in reducing disease incidence. Subsequently, spinach seeds were treated with
the selected isolates, then sown in an infested field and grown from June to July 1998. Four bacteria reduced disease incidence.
One of these four, designated as SM10, significantly suppressed the disease. Based on bacteriological properties, SM10 was
identified as a strain of Enterobacter cloacae. SM10 was observed within xylem vessels of spinach roots using light and immunoelectron microscopy, indicating E. cloacae SM10 was an endophytic bacterium of spinach.
Received 4 July 2000/ Accepted in revised form 13 September 2000 相似文献