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1.
江西退化红壤人工重建森林土壤微生物碳源代谢功能研究 总被引：5，自引：0，他引：5
应用MicroResp方法研究4种重建森林土壤微生物对不同类型碳源的代谢特征,自然恢复地为对照处理。结果表明,不同培养时间(6 h和继续培养18 h)和不同土壤深度(0~10和10~20 cm),土壤微生物对单一碳源的利用能力差异显著。4种重建森林土壤微生物对碳源利用能力有显著差异,表现为:自然恢复地阔叶混交林阔叶纯林针阔混交林针叶纯林。多样性指数和均匀度指数表明4种重建森林土壤微生物群落多样性的变化趋势为:自然恢复地阔叶混交林阔叶纯林针阔混交林针叶纯林,除自然恢复地外,土壤微生物的多样性和均匀度在4种不同重建森林类型之间差异不显著。主成分分析结果表明,所选15种碳源能够阐述4种不同重建森林土壤微生物功能多样性的差异,森林土壤微生物的敏感碳源主要为糖类。 相似文献
2.
Jiao-Yan Ying Li-Mei Zhang Wen-Xue Wei Ji-Zheng He 《Journal of Soils and Sediments》2013,13(7):1223-1231
Purpose
Disturbances such as cultivation, logging, and plantation occurred widely in acid red soil area of China, yet little is known about their effects on soil microbial community which is closely related to soil function. In this study, microbial community compositions were investigated in a red soil with different long-term land utilization patterns to understand the potential effects of cultivation and vegetation successions on relevant soil functions.Materials and methods
Land utilization patterns include restoration, degradation (logging), cropland, and pine plantation. Both DNA- and phospholipid fatty acid (PLFA)-based methods were used to measure the abundance and community structure of microorganisms.Results and discussion
In general, DNA- and PLFA-based methods showed similar results of microbial composition, but for some parameters, only one approach showed significant differences between different land utilization patterns. Land utilization patterns showed significant effects on abundance of total microbial community, bacteria, fungi, and actinomycetes which were all lowest in the cropland plot either by PLFA or DNA analyses. 17:0 cyclo/16:1 ω7c and 19:0 cyclo/18:1 ω7c which are possibly associated with environmental stresses also varied among different land utilization patterns. Both PLFA and T-RFLP analyses showed that each land utilization pattern possessed a specific microbial community structure.Conclusions
These results revealed significant effects of different land utilization patterns especially cultivation and logging on soil microbial communities and suggested that we should be cautious in utilizing red soils to sustain soil properties and functions. Combination of DNA- and PLFA-based methods is effective to provide precise results of microbial composition. 相似文献3.
Li Zhang Ao Wang Wanqin Yang Zhenfeng Xu Fuzhong Wu Bo Tan Yang Liu Lianghua Chen 《Journal of Soils and Sediments》2017,17(9):2318-2328
Purpose
Soil microbes control the bioelement cycles and energy transformation in forest ecosystems, and are sensitive to environmental change. As yet, the effects of altitude and season on soil microbes remain unknown. A 560 m vertical transitional zone was selected along an altitude gradient from 3023, 3298 and 3582 m, to determine the potential effects of seasonal freeze-thaw on soil microbial community.Materials and methods
Soil samples were collected from the three elevations in the growing season (GS), onset of freezing period (FP), deeply frozen period (FPD), thawing period (TP), and later thawing period (TPL), respectively. Real-time qPCR and polymerase chain reaction denaturing gradient gel electrophoresis (PCR-DGGE) were used to measure the abundance and structure of soil microbial community.Results and discussion
The bacterial, archaeal, and fungal ribosomal DNA (rDNA) copy numbers decreased from GS to freezing stage (FP and FPD) and then increased in thawing stage (TP and TPL). Similarly, the diversity of microbial community varied with seasonal freeze-thaw processes. The diversity index (H) of the bacterial and archaeal communities decreased from GS to FP and then increased to TPL. The fungal community H index increased in the freezing process.Conclusions
Our results suggested that abundance and structure of soil microbial community in the Tibetan coniferous forests varied by season and bacterial and archaeal communities respond more promptly to seasonal freeze-thaw processes relative to fungal community. This may have important implications for carbon and nutrient cycles in alpine forest ecosystems. Accordingly, future warming-induced changes in seasonal freeze-thaw patterns would affect soil nutrient cycles via altering soil microbial properties.4.
Elevated nitrogen (N) deposition in humid tropical regions may aggravate phosphorus (P) deficiency in forest on old weathered soil found in these regions. From January 2007 to August 2009, we studied the responses of soil microbial biomass and community composition to P addition (in two monthly portions at level of 15 g P m?2 yr?1) in three tropical forests in southern China. The forests were an old-growth forest and two disturbed forests (mixed species and pine dominated). The objective was to test the hypothesis that P addition would increase microbial biomass and change the composition of the microbial community, and that the old-growth forests would be more sensitive to P addition due to its higher soil N availability. Microbial biomass C (MBC) was estimated twice a year and the microbial community structure was quantified by phospholipid fatty acid (PLFA) analysis at the end of the experiment. Addition of P significantly increased the microbial biomass and altered the microbial community composition in the old-growth forest, suggesting that P availability is one of the limiting factors for microbial growth. This was also reflected by significant increases in soil respiration after P addition. In contrast, P addition had no effect on the microbial biomass and the microbial community composition in the pine forests. Also in the mixed forest, the microbial biomass did not significantly respond to P addition, but soil respiration and the ratio of fungal-to-bacteria was significantly increased. 相似文献
5.
Kamlesh Jangid Mark A. Williams John M. Blair William B. Whitman 《Soil biology & biochemistry》2010,42(2):302-312
Soil microbial communities were examined in a chronosequence of four different land-use treatments at the Konza Prairie Biological Station, Kansas. The time series comprised a conventionally tilled cropland (CTC) developed on former prairie soils, two restored grasslands that were initiated on former agricultural soils in 1998 (RG98) and 1978 (RG78), and an annually burned native tallgrass prairie (BNP), all on similar soil types. In addition, an unburned native tallgrass prairie (UNP) and another grassland restored in 2000 (RG00) on a different soil type were studied to examine the effect of long-term fire exclusion vs. annual burning in native prairie and the influence of soil type on soil microbial communities in restored grasslands. Both 16S rRNA gene clone libraries and phospholipid fatty acid analyses indicated that the structure and composition of bacterial communities in the CTC soil were significantly different from those in prairie soils. Within the time series, soil physicochemical characteristics changed monotonically. However, changes in the microbial communities were not monotonic, and a transitional bacterial community formed during restoration that differed from communities in either the highly disturbed cropland or the undisturbed original prairie. The microbial communities of RG98 and RG00 grasslands were also significantly different even though they were restored at approximately the same time and were managed similarly; a result attributable to the differences in soil type and associated soil chemistry such as pH and Ca. Burning and seasonal effects on soil microbial communities were small. Similarly, changing plot size from 300 m2 to 150 m2 in area caused small differences in the estimates of microbial community structure. In conclusion, microbial community structure and biochemical properties of soil from the tallgrass prairie were strongly impacted by cultivation, and the microbial community was not fully restored even after 30 years. 相似文献
6.
Yumei Jiang Chengrong Chen Zhihong Xu Yuanqiu Liu 《Journal of Soils and Sediments》2012,12(2):228-240
Purpose
The objective of the present study was to evaluate soil microbial community function and diversity among eight single and mixed species forest ecosystems (18-year-old restoration) in subtropical China. 相似文献7.
Soil microbial biomass, activity and community composition in adjacent native and plantation forests of subtropical Australia 总被引：2，自引：0，他引：2
Joanne Burton Chengrong Chen Zhihong Xu Hossein Ghadiri 《Journal of Soils and Sediments》2010,10(7):1267-1277
Purpose
Soil nitrogen (N) availability is a critical determinant of plantation productivity in subtropical Australia and is influenced by the soil microbial community. The size, structure and function of the soil microbial community can be impacted by land-use change and residue management. The objectives of this study were to examine the impact of land-use change from (1) native forest (NF) to first rotation (1R) hoop pine plantation and (2) 1R hoop pine plantation to second rotation (2R) hoop pine plantation on the soil microbial community. The impact of residue management on the soil microbial community was also investigated in the 2R forest, where soil microbial parameters were measured in tree rows (2R-T) and windrows (2R-W). In addition, relationships between soil microbial parameters and soil N parameters were investigated.Materials and methods
Each of the four treatments (NF, 1R, 2R-T and 2R-W) had five 24-m2 replicate plots from which 15 soil cores were collected and bulked at three depths (0–10, 10–20, 20–30 cm). Microbial biomass carbon (MBC) and N (MBN) and soil respiration were measured on field moist soils. In addition, carbon (C) source utilisation patterns were assessed using the whole soil MicroResp? technique (Campbell et al. 2003).Results and discussion
Results indicate that the land-use change from NF to 1R hoop pine plantation significantly reduced MBC, respiration rate, soil total C and total N. Furthermore, the land-use change appeared to have a significant impact on the soil microbial community composition measured using MicroResp? profiles. Land-use change from 1R to 2R hoop pine plantation resulted in a decline in total C and MBN and a shift in microbial community composition. When compared to the 2R-T soils, the 2R-W soils tended to have a greater microbial biomass and respiration rate. Residue management also influenced the microbial community composition measured in the MicroResp? profiles.Conclusions
Results indicate that land-use change had a significant impact on the soil microbial community, which was likely to be related to shifts in the quality and quantity of organic inputs associated with the change in land use. This may have significant implications for the long-term productivity of the soil resource. Further studies are required to confirm a difference in microbial community composition associated with residue management. In addition, long-term experiments in subtropical Australia are necessary to verify the results of this snapshot study and to improve our understanding of the impact of single-species plantation forestry and residue management on the soil microbial community, soil N dynamics and ultimately the long-term sustainability of the soil resource. 相似文献8.
Purpose
Cadmium (Cd) is a toxic heavy metal, accumulated in soil by anthropogenic activities and has serious effects on soil microbial activities in contaminated soils. Moreover, there is a lack of reliable data on the effects of Cd in the soil-plant system, since most of the information on Cd-microorganism interactions in soils are based on sewage sludge without plants. The main objective of this study was to assess the effects of Cd on soil microbial activities and community structure during growth of plant. 相似文献9.
Rongxiao Che Weijin Wang Jing Zhang Thi Thu Nhan Nguyen Juan Tao Fang Wang Yanfen Wang Zhihong Xu Xiaoyong Cui 《Journal of Soils and Sediments》2016,16(12):2698-2708
Purpose
Understanding soil heterotrophic respiration in relation to microbial properties is not only fundamental to soil respiration modelling, prediction, and regulation through management, but also essential to interpreting microbial community dynamics from an ecologically meaningful perspective. This paper reviewed the recent advances in knowledge and proposed future directions for exploring the respiration-microbe relationships by means of rDNA- or rRNA-based indices (i.e. rDNA copies, rRNA copies, and rDNA- or rRNA-based community structures).Materials and methods
We first elucidated the theoretical basis for using rDNA- or rRNA-based indices to probe into soil microbial respiration. Then, the published studies that simultaneously measured soil microbial respiration and the rDNA- or rRNA-based indices were synthesized, extracted, and analysed to further explore the respiration-microbe relationships. At last, the uncertainties and perspectives for establishing the respiration-microbe links were proposed and discussed.Results and discussion
The rDNA- or rRNA-based indices are theoretically promising for pinpointing the relationships between soil heterotrophic respiration and microbial properties. Our systematic review suggested that the correlations between bacterial rDNA copies and microbial respiration are inconsistent across studies, while the fungal and archaeal rDNA (or ITS) copies showed moderately positive and negative correlations with soil microbial respiration, respectively. Bacterial 16S rDNA-based community structures were significantly correlated with soil microbial respiration in some studies, but not in some short-term situations. Although rRNA copies are widely used as the proxies of microbial activity, no significant correlations between rRNA copies and soil microbial respiration have been found in previous studies. Bacterial 16S rRNA-based community structures were correlated well with the short-term responses of soil microbial respiration to rewetting or labile carbon amendments and clearly outperformed other rDNA- or rRNA-based indices. As respiration-microbe relationships can be affected by many factors, such as soil physicochemical properties and even the analysis methods of microbial indices, the 69 previous studies included in this review actually provided limited information on them, and the aforementioned results still need to be further confirmed in future studies.Conclusions and perspectives
Overall, the relationships between soil microbial respiration and rDNA- or rRNA-based indices are still far from being well established. Future research should be directed to systematically understanding the respiration-microbe links, with more attention to the fungus-, archaea- and RNA-related molecular indices. The relationships between microbial specific lineages and total respiration rates should be explored in future studies, and the effects of edaphic properties on the respiration-microbe relationships should also be evaluated.10.
Zhiyuan Yao Jiajia Xing Haiping Gu Haizhen Wang Jianjun Wu Jianming Xu Philip C. Brookes 《Journal of Soils and Sediments》2016,16(8):2041-2049
Purpose
The objectives of this study were to investigate (i) how the changes in cultivation pattern of vegetable affect soil microbial communities and (ii) the relationships between soil physico-chemical properties and microbial community structure.Materials and methods
Soil samples were collected from fields growing vegetable crops with various times of plastic-greenhouse cultivation (0, 1, 4, 7 and 15 years, respectively). Phospholipid fatty acid (PLFA) analysis was conducted to reveal the soil microbial community of the test soils.Results and discussion
The open-field soil had the highest total PLFAs amount. Although the Shannon-Weaver index was also highest in the open-field soil, the difference was not significant. Plastic-greenhouse cultivation decreased PLFAs species diversity and richness. Cluster analysis and principal component analysis (PCA) of the PLFA profiles revealed distinct groupings at different times during plastic-greenhouse cultivation.Conclusions
Ultimately, PLFA analyses showed that long-term plastic-greenhouse cultivation make the physiological status of soil microbial community worse and increased stress level of microorganisms. And soil microbial community was significantly affected by field water capacity and water-soluble organic carbon. The study highlights the potential risk of long-term plastic-greenhouse cultivation to soil microbial community.11.
Junli Hu Xiangui Lin Junhua Wang Jue Dai Ruirui Chen Jiabao Zhang Ming Hung Wong 《Journal of Soils and Sediments》2011,11(2):271-280
Purpose
Organic and inorganic fertilizers are used primarily to increase nutrient availability to plants. Monitoring balanced versus unbalanced fertilization effects on soil microbes could improve our understanding of soil biochemical processes and thus help us to develop sound management strategies. The objective of this study was to investigate the effects of long-term fertilization regimes on soil microbial community functional diversity, metabolic activity, and metabolic quotient and to find out the main factors that influence these parameters. 相似文献12.
Yalong Liu Ping Wang Genxing Pan David Crowley Lianqing Li Jinwei Zheng Xuhui Zhang Jufeng Zheng 《Journal of Soils and Sediments》2016,16(5):1460-1471
Purpose
Rice paddy soils undergo pedogenesis driven by periodic flooding and drainage cycles that lead to accumulation of organic matter and the stratification of nutrients and oxygen in the soil profile. Here, we examined the effects of continuous rice cultivation on microbial community structures, enzyme activities, and chemical properties for paddy soils along a chronosequence representing 0–700 years of rice cropping in China.Materials and methods
Changes in the abundance and composition of bacterial and fungal communities were characterized at three depths (0–5, 5–10, and 10–20 cm) in relation to organic carbon, total nitrogen, dissolved organic carbon, microbial biomass carbon/nitrogen, and activities of acid phosphatase, invertase, and urease.Results and discussion
Both soil organic carbon and total nitrogen increased over time at all three depths, while pH generally decreased. Microbial abundance (bacteria and fungi) and invertase and urease activity significantly increased with the duration of rice cultivation, especially in the surface layer. Fungal abundance and acid phosphatase activity declined with depth, whereas bacterial abundance was highest at the 5–10-cm soil depth. Profiles of the microbial community based on PCR-DGGE of 16S rRNA indicated that the composition of fungal communities was strongly influenced by soil depth, whereas soil bacterial community structures were similar throughout the profile.Conclusions
Soil bioactivity (microbial abundance and soil enzymes) gradually increased with organic carbon and total nitrogen accumulation under prolonged rice cultivation. Microbial activity decreased with depth, and soil microbial communities were stratified with soil depth. The fungal community was more sensitive than the bacterial community to cultivation age and soil depth. However, the mechanism of fungal community succession with rice cultivation needs further research.13.
Kobayashi Makoto Muneto Hirobe Thomas H. DeLuca Semyon V. Bryanin Valentina F. Procopchuk Takayoshi Koike 《Journal of Soils and Sediments》2011,11(8):1317-1322
Purpose
Fire is a primary form of disturbance in boreal ecosystems. Charcoal is an important by-product of forest fire and has been reported to have the potential to influence the plant community establishing after fire. To date, however, no study has effectively tested the relationship between charcoal and plant regeneration in the actual post-fire forests. To determine the contribution of charcoal to soil properties and plant regeneration after forest fires, we conducted in situ investigations concerning the relationship between charcoal and the plant–soil system. 相似文献14.
Tida Ge San’an Nie Jinshui Wu Jianlin Shen He’ai Xiao Chengli Tong Danfeng Huang Yun Hong Kozo Iwasaki 《Journal of Soils and Sediments》2011,11(1):25-36
Purpose
Increasing soil organic matter content is important in improving soil fertility; however, conventional farming practices generally lead to a reduction in such organic material. A comparative study of organic and conventional arable farming systems was conducted in Shanghai, China, to determine the influence of management practices on soil chemistry, microbial activity, and biomass. Soils used in greenhouses and open field cultivation were obtained from plots subjected to organic farming methods for 3 years or from conventionally farmed fields in the same area. 相似文献15.
Phylogenetic diversity of dissimilatory ferric iron reducers in paddy soil of Hunan, South China 总被引：2，自引：0，他引：2
Xin-Jun Wang Jing Yang Xue-Ping Chen Guo-Xin Sun Yong-Guan Zhu 《Journal of Soils and Sediments》2009,9(6):568-577
Purpose
Dissimilatory iron-reducing bacteria have been described by both culture-dependent and -independent methods in various environments, including freshwater, marine sediments, natural wetlands, and contaminated aquifers. However, little is known about iron-reducing microbial communities in paddy soils. The goal of this study was to characterize iron-reducing microbial communities in paddy soil. Moreover, the effect of dissolved and solid-phase iron (III) species on the iron-reducing microbial communities was also investigated by enrichment cultures. 相似文献16.
Yi-Fei Sun Ju-Pei Shen Cui-Jing Zhang Li-Mei Zhang Wen-Ming Bai Ying Fang Ji-Zheng He 《Journal of Soils and Sediments》2018,18(3):762-774
Purpose
Changes of nitrogen (N) cycle caused by N fertilization and precipitation regimes have affected the key ecosystem structure and functions in temperate steppe, which may modify the structure of soil microbial communities involved in N transformation. This paper was designated to examine the response of soil ammonia oxidizers and denitrifiers to the N fertilization and precipitation regimes in a semi-arid steppe where N and water contents are major limiting factors of the grassland productivity.Materials and methods
This study was based on a long-term N fertilization and precipitation regimes experiment in Inner Mongolia (116° 17′ 20″ E, 42° 2′ 29″ N). The treatments including CK (control), R (reduced precipitation), W (30% increase in precipitation), N (10 g N m?2 y?1), RN (reduced precipitation and 10 g N m?2 y?1), and WN (30% increase in precipitation and 10 g N m?2 y?1). Soil basic chemical properties and microbial activities were analyzed. Molecular methods were applied to determine the abundance, structure and diversity of ammonia oxidizers and denitrifiers. Statistical analysis detected the main and interactive effect of treatments on soil microbial communities and revealed the relationship between soil microbial community structures and environmental factors.Results and discussion
N fertilization significantly increased ammonia-oxidizing bacteria (AOB) abundance. Ammonia-oxidizing archaea (AOA) community structure was markedly changed in N fertilizer treatment and strongly affected by soil pH, while soil nitrate and water content correlated with AOB community structure. Soil nitrate was the key factor influencing nirK gene community structure, while soil pH and water content explained much of the variations of nosZ gene community. AOB-amoA and nosZ gene community diversities were influenced by precipitation regimes and interaction of N fertilization and precipitation regimes, respectively.Conclusions
N fertilization and precipitation regimes had significant influences on the changes of soil properties and microbial functional communities. Soil nitrification was mainly driven by AOB in the semi-arid grassland. Changes of substrate content and soil pH were the key factors in shifting functional microbial communities. The non-synergistic effects of N fertilization and precipitation regimes on the microbial functional groups indicated that the negative effect of lower pH induced by N fertilization would be alleviated by precipitation regimes, which should be well considered in grassland restoration.17.
Xin-Yi Shen Li-Mei Zhang Ju-Pei Shen Ling-Hao Li Chao-Lei Yuan Ji-Zheng He 《Journal of Soils and Sediments》2011,11(7):1243-1252
Purpose
Global nitrogen deposition has profound impact on the terrestrial ecosystem including the semiarid temperate grassland, causing vegetation community shifts and soil acidification. Little is known regarding the effect of nitrogen (N) deposition on the belowground microbial communities. This study aimed to examine the response of ammonia-oxidizing bacteria (AOB) and archaea (AOA) to added N in semiarid temperate grassland. 相似文献18.
Purpose
The purposes of this study were to identify the influence of a severe drought period on the impact of a subsequent heat–drought disturbance on the microbial community of a Mediterranean agricultural soil and particularly to highlight the long-term effects on the microbial catabolic profiles.Materials and methods
We performed an experiment in microcosms and applied the MicroResp? method on soil microbial communities.Results and discussion
A 21-day combined heat–drought disturbance had less impact on soil microbial communities pre-exposed to a 73-day severe drought than on those that were not pre-exposed. These differences were observed not only for biomass and physiological traits (basal respiration, qCO2), but also for catabolic microbial structure evolution during the recovery time.Conclusions
These observations suggest that the physiological stress imposed by the initial severe drought changed the microbial catabolic structure or physiological state and favoured a portion of the microbial community best adapted to cope with the final heat–drought disturbance. Consequently, the initial severe drought may have induced a community tolerance to the subsequent heat wave. In this study, we also note that resilience was, more than resistance, an indicator of pre-exposure to stress. In the context of assessing the effects of extreme climatic events on soil microbial processes, these results suggest that future studies should take into account the historic stress of habitats and resilience parameters.19.
Understanding the survival and persistence of Escherichia coli in soil with different microbial composition is essential for the accuracy of water quality assessment and microbial source tracking. This microcosm experiment was conducted to investigate the survival pattern of three E. coli strains (originated from soil, dog feces and human feces, separately) in soil with modified microbial community composition. Bile salt No. 3 (BS3) of progressively increased density (0.05%, 0.15%, 0.30% and 0.50%) was added into sandy loam soils and incubated for 90 days. Laboratory cultured E. coli were then inoculated into soil and incubated for another 150 days to monitor their survival pattern. Change of bacterial community diversity by BS3 was detected by both cultivation based and cultivation independent (PCR-Denaturing Gradient Gel Electrophoresis) methods. In general, progressively increased BS3 concentration resulted in decreased CFU counts both at 10 days and 90 days incubation. DGGE analysis indicated only a slight change in bacterial community composition at 10 days but a significant change at 90 days. Cluster analysis suggested that BS3 treatment grouped separately from controls. Survival of E. coli in soil was significantly influenced by the complexity of the microbial community, as die-off rate of E. coli progressively declined with the reduction of microbial community diversity. Differential survival of E. coli under different soil microbial stress highlights the importance of incorporating biotic factors in predictive models for water quality management and microbial source tracking study. 相似文献
20.
Ming Li Lili Jiang Zhaojun Sun Jinzhi Wang Yichao Rui Lei Zhong Yanfen Wang Paul Kardol 《Journal of Soils and Sediments》2012,12(7):1040-1053