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1.
小西葫芦黄花叶病毒山东南瓜分离物的分子特性 总被引：2，自引：0，他引：2
Zucchini yellow mosaic virus (ZYMV) was detected by RT-PCR from pumpkin (Cucurbita moschata) plant showing yellowing and mosaic symptom from Liaocheng, Shandong Province. The 3'-termial 1 684 bp genomic sequence covered 633 bp of NIb encoding sequence, 840 bp of cp gene and 211 bp of 3'-untranslated region of the isolate ZYMV-Liaocheng was determined. The cp gene of ZYMV-Liaocheng shared identities of 81.4%-98.8% and 89.4%-99.5% at nucleotide and amino acid levels, respectively, with other ZYMV sequences available in the GenBank. Phylogenetic analysis indicated that ZYMV could be clustered to 6 genotypes. ZYMV-Liaocheng belonged to genotypeⅠ, which contained isolates from Asia, Europe and America. Genotypes Ⅲ and Ⅴ were unique and contained only isolates from East Asia. The isolates from East Asia had the highest variability. 相似文献
2.
Sugarcane bacilliform virus(SCBV) was detected by PCR from sugarcane showing chlorosis and mottle symptom from Kaiyuan, Yunnan Province.Part sequence of replicase gene of the isolate SCBV-Kaiyuan was determined.Sequence analysis indicated that the 589 bp of SCBV-Kaiyuan shared identities of 73.2%-74.0% and 83.1%-84.1% at nucleotide and amino acid levels with SCBV-Australia respectively, 66.7%-68.4% and 65.6%-67.7% with SCBV-Morocco.The quality and yield of the sugarcane infected with SCBV-Kaiyuan was also investigated.The juice extraction, sucrose content, gravity purity and average stalk weight were decreased 1.55%, 1.24%, 2.22% and 0.26 kg in plants infected with SCBV-Kaiyuan, but reducing sugar was increased by 0.21% in infected plants. 相似文献
3.
The tripe gene block (TGB)genes of Barley stripe mosaic virus China strain (BSMV-CH)were amplified from cDNA of BSMV-CH RNAβ (GenBank accession No:AY789694)by PCR with special primer pairs, and cloned into pMD18-T vector for sequencing. Analysis of the sequences showed that the full length of BSMV-CH TGB1, TGB2 and TGB3 were 1 539, 396 and 468 bp, with deduced 512, 131 and 155 amino acids, respectively. BSMV-CH TGB1 shared 94.1%-95.4% nucleotide identities and 91.0%-94.5% amino acid identities with that of other BSMV strains, BSMV-CH TGB2 shared 96.5%-97.2% nucleotide identities and 98.5%-99.2% amino acid identities with that of other BSMV strains, and BSMV-CH TGB3 shared 95.7%-96.6% nucleotide identities and 94.2%-96.8% amino acid identities with that of other BSMV strains. Phylogenetic tree based on the amino acid of Hordeiviruses TGB genes showed that BSMV-CH was relatively closed to CV17 in genetic relationship. Therefore, BSMV-CH was deduced to be a recombined strain of CV17 and CV42. 相似文献
4.
进境玉米种子携带玉米褪绿斑驳病毒的检测与鉴定 总被引：3，自引：0，他引：3
Imported maize seeds were planted in a quarantine greenhouse and two seedlings with chlorotic mottle symptoms were observed. The ELISA results showed that the two seedlings reacted positively with antibody against Maize chlorotic mottle virus (MCMV). The positive samples were further identified by RT-PCR method and the 711 bp size target bands were amplified specifically. The similarity range of nucleotide sequence of both RT-PCR product and six MCMV coat protein genes was 97%-99%. The amino acid sequence homology was 97.88%-99.89%. Based on the above results, the virus was identified as MCMV. It was the first time that MCMV was intercepted from imported maize seeds. 相似文献
5.
Four isolates of Rice black-streaked dwarf virus (RBSDV) were collected from the maize plants showing rough dwarf symptom in Linyi and Tai'an,Shandong province.The S10 genomic sequences of these isolates were determined and compared with those of 14 other RBSDV isolates.All of the four sequences were 1 801 base pairs (bp) long including the 5'-UTR of 21 bp and the 3'-UTR of 103 bp.They all contained an open reading frame of 1 677 bp (22-1698),encoding the coat protein (CP) of 558 amino acids.The sequences of these four RBSDV isolates and those of the major cp gene of 14 other isolates available in the GenBank were divided into two groups in the phylogenetic tree.Recombination analysis indicated that the isolate Lym2 was likely a recombinant of isolates Lym1 and Zhjs. 相似文献
6.
广东番茄上检测到Tospovirus病毒 总被引：1，自引：0，他引：1
Some tomato samples possibly infected by tospovirus in Guangdong were detected with indirect ELISA and RT-PCR. The results showed that the virus infected tomato did not react with the antiserum of Tomato spotted wilt virus (TSWV), but about 500 bp fragment of RT-PCR shared 83%-84% nucleotide identities with N gene of those reported tospoviruses. The phylogenetic tree of the N gene fragment compared with those of other tospoviruses indicated that the virus infected tomato was belonged to Tospovirus. 相似文献
7.
来自安徽不同寄主PVY分离物的血清学鉴定及其cp基因分子进化分析 总被引：1，自引：0，他引：1
Tobacco and potato samples showing symptoms of PVY were collected from different regions in Anhui Province, and the ELISA results of partial samples were positive. The total RNA was extracted from the positive samples by TRIZOL methods. Specific primer pair was designed to amplify cp gene of PVY by RT-PCR. Sequencing results indicated that the full length of cp gene of PVY from tobacco (PVY-CP-4) and pota-to (PVY-CP-7) is 801 nts, and each of them encodes 266 amino acids. A phylogenetic tree based on alignment of cp nucleotide sequences was constructed and the sequence comparing of cp gene was conducted. The results showed that PVY-CP-4 could be grouped into one branch with PVYO and PVYN:O and shared the highest sequence similarity (99.4%) with PVYO (EF026074). It was suggested that PVY-CP-4 derived from tobacco in Hefei might belong to PVYO. PVY-CP-7 clustered together with PVYN and PVYNTN and formed another branch. Furthermore, PVY-CP-7 shared the highest sequence similarity (98.3%) with PVYNTN(AJ890347), PVYNTN (EF026075) and PVYNTN(AJ585342). It was supposed that PVY-CP-7 derived from potato in Wuhe probably belonged to PVYNTN. 相似文献
8.
草莓轻型黄边病毒3'末端序列多态性研究 总被引：1，自引：0，他引：1
The 930 bp segment in 3' terminal region of Strawberry mild yellow edge virus(SMYEV) genome was amplified by 3' rapid amplification of cDNA ends(RACE).Ten Chinese isolates were sequenced,and 7 of them were the same.Nucleotide and amino acid identities and phylogenesis were analyzed between Chinese isolates and 24 isolates from other regions of the world.Sequence analysis of the 878 nt stretch within 3' terminal region of SMYEV genome showed that nucleotide acid identities ranged from 79.5% to 100%,deduced amino acid sequences of coat protein gene identity were 86.4% to 100%.Phylogenetic analysis showed that all isolates of SMYEV fell into four clades.To a certain extent,the clades were related with the geological distribution of SMYEV.Chinese isolates SY01 and SY04 lay in the same clade with European and American isolates,but formed a small separate branch.Isolates SY03 and SY02,derived from Fragaria×ananassa cv.Changhong-2 and F.pentaphylla respectively,had a far relationship with other isolates and fell into one clade.They were likely to be the special isolates that existed only in China. 相似文献
10.
YN80 was isolated from Amorphophallus rivieri Durieu showing mosaic and crinkle symptoms in Songming, Yunnan province. Flexuous filamentous particles were found in diseased leave sap and pinwheel inclusion bodies were found in the leave tissue. YN80 had positive reaction to universal antibody of Potyvirus by DAS-ELISA. 3'-terminal sequence of YN80 was cloned and sequenced. cp gene of YN80 consisted of 987 nt, encoded 328 aa (36.1 kDa). Sequence analysis showed that YN80 shared the highest identity (97.0%)with CP amino acid sequence of Dasheen mosaic virus (DsMV). These data indicated that YN80 was an isolate of DsMV. This is the first molecular identification of A. rivieri Durieu isolate of DsMV in China. 相似文献
11.
百合斑驳病毒云南分离物 全基因组序列分析及CP结构预测 总被引：1，自引：0，他引：1
对云南嵩明百合上发生的百合斑驳病毒(Lily mottle virus, LMoV)进行全基因组序列测定及分析,并对LMoV嵩明分离物(LMoV-SMi1、LMoV-SMi2)和玉溪分离物(LMoV-YXi1、LMoV-YXi2)外壳蛋白(coat protein,CP)基因进行序列比较,发现云南的LMoV分为2个类群,玉溪分离物属于种群I,嵩明分离物属于种群II。2个类群间的核苷酸和氨基酸同源性分别为86.7%~89.5%、90.1%~92.7%,玉溪分离物和嵩明分离物相比,cp基因发生了3个核苷酸的缺失。对国内外LMoV所有分离物的cp基因氨基酸序列进行系统进化分析,结果表明所有LMoV分离物可划分为2个种群,种群I分离物较种群II分离物几乎均存在1个苏氨酸缺失的差异。此外,对LMoV-SMi2的CP相关特性和空间结构进行了初步预测,认为该蛋白为球状,具有较强的表面可能性,不存在跨膜区域,大多数区域能够形成主要的抗原决定簇,主要集中在aa12-22、aa31-42、aa83-99、aa179-191、aa215-223、aa249-259区段,可作为制备抗血清选择抗原的参考。LMoV-SMi2和LMoV-YXi1在二级结构和三级结构上存在一定的差异,但总体空间结构差异不大。 相似文献
12.
灰比诺葡萄病毒(Grapevine Pinot gris virus, GPGV)是国内新近报道的葡萄病毒,能引起葡萄叶片褪绿斑驳、皱缩及变形等症状,严重影响葡萄长势。为明确我国GPGV的发生及基因序列变异情况,本研究采用RT-PCR方法对采自我国15个省(市)自治区的195个葡萄样品进行检测,其中55个葡萄样品检测出GPGV。对49个GPGV阳性分离物的外壳蛋白(coat protein, cp)和运动蛋白(movement protein, mp)基因进行克隆、测序, 序列分析结果显示:来源于国内外的GPGV分离物cp基因和mp基因的核苷酸和氨基酸序列同源性分别为85.30%~100%和95.00%~100%、85.73%~99.87%和95.58%~100%。基于cp和mp基因序列构建的进化树,将GPGV分离物划分为3个明显的组群。其中,大部分GPGV分离物被划分在组群1内,其它中国GPGV分离物形成2个新的组群2和3。本研究是关于中国GPGV分离物基因序列变异的初次报道,可为进一步开展GPGV分子检测的技术研发及不同变种的致病性研究提供依据。 相似文献
13.
烟草丛顶病主要由烟草丛顶病毒(Tobacco bushy top virus ,TBTV)和烟草扭脉病毒(Tobacco vein distorting virus ,TVDV)复合侵染引起。其中,TVDV的CP蛋白可分别包装TBTV和TVDV形成病毒粒子;但也存在TVDV单独侵染不携带TBTV的病样。本文利用RT-PCR对自然状态下携带TBTV的TVDV(采自云南弥渡)和不携带TBTV的TVDV (采自云南保山)的cp基因进行序列克隆,发现TVDV弥渡分离物的cp基因为618个核苷酸,而TVDV保山分离物的cp基因为621个核苷酸,二者的核苷酸序列一致性为90.02 %,氨基酸序列一致性为89.81 %;而长度相同的TVDV cp基因序列一致性为98.5 % ~ 100 %。表明这2个cp基因属于2种不同类型。系统发育树分析也表明这2个cp基因属于进化距离较远的2个群。利用SWISS-MODEL进行同源建模,发现2种类型的TVDV CP蛋白的主要空间结构域基本一致,存在细小的结构域及结构域之间无规则卷曲角度的差异,整体空间结构没有发生明显改变。推断TVDV保山分离物CP蛋白中关键氨基酸的序列突变是导致CP无法包装TBTV,从而在病害传播过程中丢失TBTV的主要因素。 相似文献
14.
侵染百合的黄瓜花叶病毒亚组Ⅱ分离物cp基因克隆和序列分析 总被引：1，自引：0，他引：1
从云南大理的东方型百合上得到黄瓜花叶病毒分离物(CMV-DL), ELISA检测初步确定为CMV亚组Ⅱ分离物, 设计并合成CMV亚组Ⅱ的特异引物, RT-PCR扩增得到1条约800 nt的特异片段, 经克隆及序列测定, 该片段长828 nt, 包含的外壳蛋白(CP)基因由657 nt组成。将该分离物的cp基因与其它14个CMV分离物进行同源性比较, 在核苷酸水平上与CMV亚组I和亚组Ⅱ的同源性分别为76.8%~78.1%和98.6%~99.2%;在氨基酸水平上与CMV亚组I和亚组Ⅱ的同源性分别为82.0%~84.3%和95.9%~100.0%。结果表明CMV-DL为CMV亚组Ⅱ成员。 相似文献
15.
为明确侵染白附子的芋花叶病毒(dasheen mosaic virus,DsMV)的分子变异情况,对51个DsMV白附子分离物(DsMV-BF)的外壳蛋白(Coat Protein,CP)基因和3个分离物的近全长基因组序列进行了克隆和测定,DsMV-BF的CP基因大小有855个和942个核苷酸两种类型,51个白附子分离物之间CP基因的核苷酸和氨基酸一致率分别为88.3%~100%和91.9%~100%,BF8、BF30和BF38分离物之间多聚蛋白的核苷酸和氨基酸序列一致率分别为82.9%~95.9%和90.7%~95.9%,与GenBank中其他分离物之间多聚蛋白的核苷酸和氨基酸序列一致率分别为76.9%~99.4%和85.6%~99.0%;P1基因的分子变异较大,P1基因大小有987个和990 个核苷酸两种类型;CP基因核苷酸序列系统进化树分析结果表明,侵染白附子的DsMV分离物可分为两个亚组;重组分析结果表明BF8和BF30分离物各检测到1个重组事件,BF38检测到2个重组事件。 相似文献
16.