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1.
Laccases- or laccase-like multicopper oxidases (LMCO) catalyze the oxidation of various substrates, such as phenols, diamines and metals, coupled with the reduction of molecular oxygen to water. Compared to studies on function and diversity of LMCO in plants and fungi, little is known about this enzyme type in bacteria and especially on their possible implication in degradation of organic matter in soils. This study presents a molecular investigation of the diversity and distribution of bacterial LMCO genes among three upper horizons of a forest Cambisol and in a grassland Cambisol. Some culture strains of soil bacteria were also analyzed at the molecular level and for their capability to oxidize naturally occurring 2,6-dimethoxyphenol, a LMCO substrate. A high LMCO gene diversity was found in the Cambisol soil samples with 16 distinct sequence type clades, of which approximately one half was not matching with any reference sequence of known bacteria. The highest richness of bacterial LMCO genes was observed in the organic horizon of the forest soil, which is concomitant with a previous analysis of the diversity of fungal laccase genes and corresponding soil laccase activity. Some clusters of sequence types showed a specific distribution in one of the soils or in horizons, while others appeared more ubiquist. Multiple bacterial LMCO genes were described in Agromyces salentinus and Sinorhizobium morelense, what so far was only known from fungi.  相似文献   

2.
Fragments of buried Late Pleistocene (30000-year-old) and Early Holocene (10000-year-old) paleosols contained viable complexes of microscopic fungi. The mycobiota of these paleosols represents a pool of fungal spores that is lower in number and species diversity as compared to that in the recent humus horizons and higher than that in the inclosing layers. The central part of the paleosol profiles is greatly enriched in microscopic fungi. In the intact humus horizons of the Late Holocene (1000–1200 years) paleosols, actively functioning fungal complexes are present. These horizons are characterized by their higher level of CO2 emission. The buried horizons, as compared to the recent mineral ones, contain a greater fungal biomass (by several times) and have a higher species diversity of microscopic fungi (including fungi that are not isolated from the recent horizons). Nonsporulating forms are also present there as sterile mycelium. The seasonal dynamics of the species composition and biomass of the fungal complexes were more prominent and differed from those inherent to the surface soil horizons. In the buried humus horizons, the dynamics of the fungal biomass were mainly due to the changes in the content of spores. The data on the composition of the fungal complexes in the buried soils confirm (due to the presence of stenotopic species) the results of paleobotanic analyses of the past phytocenoses or do not contradict them.  相似文献   

3.
In the organic horizons of the Al-Fe-humus podzols under the old pine forests of the northern taiga, the biomass of all the groups of microorganisms, the length of the fungal and actinomycete mycelium, the number of fungal spores, and the bacterial population were maximal (13 mg/g) irrespectively of the stage of pyrogenic succession. The share of fungi (mainly, of basidiomycetes) exceeded 90%. In the mineral root-inhabited soil horizons, the biomass of microorganisms was not greater than 1.0 mg/g. The soil under the lichen pine forest had the smallest biomass of microorganisms as compared to the soil under the pine forests that were not exposed to fire for a long time. At all the stages of the pyrogenic succession, the most favorable conditions for the functioning of microorganisms were in the root-inhabited horizons of the soils in near-stem sites due to the accumulation of nutrients there. In the soils of these zones, the basidiomycete biomass was greater than that in the soils of the gaps. In the mineral soil horizons, buckleless micromycetes demonstrated the same trend. No distinct parcella differences, with respect to the soil nutrient regime, were found only for the prokaryotes. The fungi in the Al-Fe-humus podzols may be used as indicators for the pyrogenic succession stages of forest ecosystems. At the early stages, micromycetes without buckles prevailed, and, in the course of succession, the share of basidiomycetes clearly increased. The density and structure of mycorrhiza were tightly related to the nutrient regime of the soils. The increase in the concentration of available biogenic elements in the root-inhabited soil horizons did not cause the necessity of developing complex mycorrhiza forms.  相似文献   

4.
5.
We used a combination of molecular, culture and biochemical methods to test the hypothesis that severe infection of pine by dwarf mistletoe (genus Arceuthobium) has significant effects on structure and function of soil fungal communities, and on carbon cycling in soils. PCR and DNA sequencing of the basidiomycete communities in paired blocks of uninfected and infected trees revealed: (1) that the top, organic soil layer in this system is inhabited almost exclusively by ectomycorrhizal fungi; (2) no difference in species richness (6 species core−1 in both) or Shannon-Wiener evenness (0.740 and 0.747 in uninfected and infected blocks respectively), however Shannon-Wiener diversity was significantly greater in infected blocks (1.19 vs 1.94 in uninfected and infected blocks respectively, P < 0.05); (3) significant differences in basidiomycete species composition, with nearly complete absence of two system co-dominant Russula species in infected blocks, and replacement of one co-dominant Piloderma species with another in infected plots, indicating physiological variability within the genus. Soil fungal physiological diversity measured using the Fungilog system was significantly greater in terms of both number of carbon substrates used by culturable soil fungi (both ascomycetes and basidiomycetes) in infected blocks, and the rate at which these substrates were used. Soil enzyme assays revealed greater laccase, peroxidase, and cellulase activities in soils associated with infected trees. Thus, event cascades associated with severe dwarf mistletoe infection not only significantly affected soil fungal species composition and increased species diversity, but also impacted on carbon-related function and functional diversity. Given the geographic range of this pathogen, and forecasts that epidemics of this disease will increase in range in severity with global climate change, these effects have the potential to significantly impact local and global carbon budgets.  相似文献   

6.
The distribution of the fungal biomass and diversity of cultivated microscopic fungi in the profiles of some soils from East (Progress Station, valleys of the Larsemann Hills oasis) and West (Russkaya Station, the Marie Byrd Land) Antarctica regions were studied. The structure of the biomass (spore/mycelium and live cells/dead cells) was analyzed by fluorescence microscopy with staining using a set of coloring agents: calcofluor white, ethidium bromide, and fluorescein diacetate. The species composition of the cultivated microscopic fungi was determined on Czapek’s medium. The fungal biomass in the soils studied is not high (on the average, 0.3 mg/g of soil); the greatest biomass (0.6 mg/g) was found in the soil samples with plant residues. The fungal biomass is mainly (to 70%) represented by small (to 2.5 μm) spores. About half of the fungal biomass is composed of living cells. There are differences in the distribution of the fungal biomass within the profiles of different primitive soils. In the soil samples taken under mosses and lichens, the maximal biomass was registered in the top soil horizons. In the soils with the peat horizon under stone pavements, the greatest fungal biomass was registered in the subsurface horizons. Thirty-eight species of cultivated microscopic fungi were isolated from the soils studied. Species of the genus Penicillium and Phoma herbarum predominated.  相似文献   

7.
Fungal denitrification in soils is receiving considerable attention as one of the dominant N2O production processes. However, because of the lack of a methodology to detect fungal denitrification-related genes, the diversity and ecological behavior of denitrifying fungi in soil remains unknown. Thus, we designed a primer set to detect the fungal nitrite reductase gene (nirK) and validated its sensitivity and specificity. Through clone library analyses, we identified congruence between phylogenies of the 18S rRNA gene and nirK of denitrifying fungal isolates obtained from the surface-fertilized cropland soil and showed that fungi belonging to Eurotiales, Hypocreales, and Sordariales were primarily responsible for N2O emissions in the soil.  相似文献   

8.
The soil fungal diversity and community partitioning between the bulk soil and stone compartments was investigated using PCR based approaches targeting the barcoding internal transcribed spacer (ITS) of rDNA and the laccase encoding functional gene as genetic markers. Soil samples were collected from the B-horizon of spruce and beech forests at the Hainich Biodiversity Exploratory, central Germany. The targeted markers were amplified from the respective DNA extracts using general fungal primers and basidiomycete laccase gene specific primers, cloned and sequenced. Differences in the fungal community composition between the two forest types and the soil compartments were indicated by both markers. When the effects of ecological factors were considered, the two markers produced different patterns of results. The ITS rDNA marker revealed communities principally influenced by forest type, while those detected with the functional marker were mainly affected by soil pH. The fungal communities detected by the functional marker in particular, differed significantly between soils and stones, indicating that laccase-producing fungi are specifically adapted to degrade organic matter in soils rather than weathering of stones. The study underlines the fact that coherent and complementary results may be obtained with both genetic markers used.  相似文献   

9.
Microorganisms play a dominant role in Antarctic ecosystems, yet little is known about how fungal diversity differs at sites with considerable human activity as compared to those that are remote and relatively pristine. Ross Island, Antarctica is the site of three historic expedition huts left by early explorers to the South Pole, Robert F. Scott and Ernest Shackleton. The fungal diversity of these wooden structures and surrounding soils was investigated with traditional culturing methods as well as with molecular methodology including denaturing gradient gel electrophoresis (DGGE) using the internal transcribed spacer (ITS) regions of ribosomal DNA for identification. From historic wood and artifact samples and soils adjacent to the huts as well as soil samples obtained from the Lake Fryxell Basin, a remote Dry Valley location, and remote sites at Mt. Fleming and the Allan Hills, 71 fungal taxa were identified. The historic huts and associated artifacts have been colonized and degraded by fungi to various extents. The most frequently isolated fungal genera from the historic woods sampled include Cadophora, Cladosporium and Geomyces. Similar genera were found in soil samples collected near the huts. Sampling of soils from locations in the Transantarctic Mountains and Lake Fryxell Basin at considerable distances from the huts and with different soil conditions revealed Cryptococcus spp., Epicoccum nigrum and Cladosporium cladosporioides as the most common fungi present and Cadophora species less commonly isolated. DGGE revealed 28 taxa not detected by culturing including four taxa which possibly have not been previously described since they have less than 50% ITS sequence identity to any GenBank accessions. Fungi capable of causing degradation in the wood and artifacts associated with the expedition huts appear to be similar to those present in Antarctic soils, both near and at more remote locations. These species of fungi are likely indigenous to Antarctica and were apparently greatly influenced by the introduction of organic matter brought by early explorers. Considerable degradation has occurred in the wood and other materials by these fungi.  相似文献   

10.
Mycelial fungi in a solonchakous chestnut soil, a sulfate solonchak, and a soda solonchak were studied in the western Lake Baikal basin. The humus content, the degree of salinization, and the composition of salts affected the structure of the micromycete communities. In the chestnut soil, more than half of the species identified were found. The species diversity was higher in the nonsaline and humus horizons. The eolian deposit on the soda solonchak was characterized by the presence of six species of fungi that did not occur in other soil horizons. Their occurrence in the fresh deposit seems to be related to the eolian transfer of fungi with the fine earth from the adjacent areas with the nonsaline soils. The soda solonchak fungi are dominated by the haloalkalitolerant and alkalophilic micromycetes, among which the representatives of the Acremonium (A. antarcticum and A. rutilum) and Verticillum genera and Mycelia sterilia were identified. There was also an alkalophilic ascomycete, which is an indicator of soda salinization??Heleococcum alkalinum. On the whole, the soda solonchak had the lowest number of fungal germs and the lowest species diversity of mycelial fungi among the soils compared.  相似文献   

11.
The method of luminescent microscopy has been applied to study the structure of the microbial biomass of soils and soil-like bodies in East (the Thala Hills and Larsemann Hills oases) and West (Cape Burks, Hobbs coast) Antarctica. According to Soil Taxonomy, the studied soils mainly belong to the subgroups of Aquic Haploturbels, Typic Haploturbels, Typic Haplorthels, and Lithic Haplorthels. The major contribution to their microbial biomass belongs to fungi. The highest fungal biomass (up to 790 μg C/g soil) has been found in the soils with surface organic horizons in the form of thin moss/lichen litters, in which the development of fungal mycelium is most active. A larger part of fungal biomass (70–98%) is represented by spores. For the soils without vegetation cover, the accumulation of bacterial and fungal biomass takes place in the horizons under surface desert pavements. In the upper parts of the soils without vegetation cover and in the organic soil horizons, the major part (>60%) of fungal mycelium contains protective melanin pigments. Among bacteria, the high portion (up to 50%) of small filtering forms is observed. A considerable increase (up to 290.2 ± 27 μg C/g soil) in the fungal biomass owing to the development of yeasts has been shown for gley soils (gleyzems) developing from sapropel sediments under subaquatic conditions and for the algal–bacterial mat on the bottom of the lake (920.7 ± 46 μg C/g soil). The production of carbon dioxide by the soils varies from 0.47 to 2.34 μg C–CO2/(g day). The intensity of nitrogen fixation in the studied samples is generally low: from 0.08 to 55.85 ng С2Н4/(g day). The intensity of denitrification varies from 0.09 to 19.28 μg N–N2O/(g day).  相似文献   

12.
The effects of copper pollution on the soil fungal flora was investigated. Soils treated with 100, 200, 400, 800 or 1600 μg Cu g?1 were used for experiments to study changes in fungal populations, especially the development and dominance of copper-tolerant fungi. Fungi were sampled 1, 3 and 5 months after copper treatment.All the correlation coefficients between the copper contents and the number of fungal colonies plated were positive. The higher the copper concentration in soil, the more 1000 μ Cu ml?1 tolerant fungi were isolated. The relative number of 1000 μg Cu mr?1 tolerant fungi from the soil treated with 1600 μg Cu g?1 was about 30% of those of the control 14 days after treatment. Within the limits of this experiment, the increase in fungal populations was directly correlated with the increase of dominant Cu-tolerant fungi.From control soils, containing low quantities of copper, 1000 μg Cu ml?1 tolerant fungi were also isolated; whereas, from soils containing high amounts of copper, some Cu-sensitive fungi were isolated. Most of the 1000 μg Cu ml?1 tolerant fungi were Penicillium spp. It was concluded that the genus Penicillium may be dominant in soils polluted with copper.  相似文献   

13.
Extracellular enzymes produced by heterotrophic microorganisms in the soil are responsible for the decomposition of organic compounds. Basidiomycete fungi are the primary decomposer agents in temperate wooded ecosystems and contribute extensively to extracellular enzyme activity and nutrient mineralisation within soils. Growth and development of basidiomycete mycelia is influenced by soil-dwelling invertebrate grazers with potential implications for fungal activity and ecosystem functioning. The impacts of four invertebrate taxa belonging to Isopoda, Myriapoda, Collembola and Nematoda on the production of eight hydrolytic enzymes by four saprotrophic basidiomycetes (Phanerochaete velutina, Resinicium bicolor and two strains of Hypholoma fasciculare) were compared in a factorial microcosm study. Grazing generally increased enzyme production but invertebrates had species-specific impacts on enzyme activity. The magnitude of grazing influenced enzyme activity; macrofauna (woodlice and millipedes) induced the greatest responses. Enzymatic responses varied markedly between fungi. Grazing enhanced enzyme activity in the exploitative mycelial networks of P. velutina and H. fasciculare, while the opposite effects were observed in the explorative R. bicolor networks. The impacts of soil fauna on nutrient mineralisation depend on fungal community composition. β-glucosidase, cellobiohydrolase, N-acetylglucosaminidase, acid phosphatase and phosphodiesterase activities were affected most frequently by grazing and invertebrate activity, and thus had direct consequences for carbon, nitrogen and phosphorous cycling. The results indicate that invertebrate diversity and community composition may influence the spatial distribution and activity of extracellular enzymes with direct implications for nutrient mineralisation and trunover in woodland soils.  相似文献   

14.
Soil contamination in agroecosystems remains a global environmental problem. Biochar has been suggested as an organic amendment to alleviate soil pollution, sequester carbon(C), and improve soil fertility. However, information on how bacterial and fungal communities in acidic bulk and rhizosphere soils respond to swine manure and its biochar is still lacking. In this study, biochar and swine manure were applied at two rates of 1.5 and 3 t ha-1 in a rice-wheat rotation field to assess ...  相似文献   

15.
In the southern Great Plains (USA), encroachment of grassland ecosystems by Prosopis glandulosa (honey mesquite) is widespread. Mesquite encroachment alters net primary productivity, enhances stores of C and N in plants and soil, and leads to increased levels of soil microbial biomass and activity. While mesquite’s impact on the biogeochemistry of the region is well established, it effects on soil microbial diversity and function are unknown. In this study, soils associated with four plant types (C3 perennial grasses, C4 midgrasses, C4 shortgrasses, and mesquite) from a mesquite-encroached mixed grass prairie were surveyed to in an attempt to characterize the structure, diversity, and functional capacity of their soil microbial communities. rRNA gene cloning and sequencing were used in conjunction with the GeoChip functional gene array to evaluate these potential differences. Mesquite soil supported increased bacterial and fungal diversity and harbored a distinct fungal community relative to other plant types. Despite differences in composition and diversity, few significant differences were detected with respect to the potential functional capacity of the soil microbial communities. These results may suggest that a high level of functional redundancy exists within the bacterial portion of the soil communities; however, given the bias of the GeoChip toward bacterial functional genes, potential functional differences among soil fungi could not be addressed. The results of this study illustrate the linkages shared between above- and belowground communities and demonstrate that soil microbial communities, and in particular soil fungi, may be altered by the process of woody plant encroachment.  相似文献   

16.
Repeated prescribed burning is frequently used as a forest management tool and can influence soil microbial diversity and activity. Soil fungi play key roles in carbon and nutrient cycling processes and soil fungal community structure has been shown to alter with increasing burning frequency. Such changes are accompanied by changes to soil carbon and nitrogen pools, however, we know little regarding how repeated prescribed burning alters functional diversity in soil fungal communities. We amended soil with 13C-cellulose and used RNA stable isotope probing to investigate the effect of biennial repeated prescribed burning over a 34-year period on cellulolytic soil fungi. Results indicated that repeated burning altered fungal community structure. Moreover, fungal community structure and diversity in 12C and 13C fractions from the unburned soil were not significantly different from each other, while those from the biennial burned soils differed from each other. The data indicate that fewer active fungi in the biennially burned soil incorporated 13C from the labelled cellulose and that repeated prescribed burning had a significant impact on the diversity of an important functional group of soil fungi (cellulolytic fungi) that are key drivers of forest soil decomposition and carbon cycling processes.  相似文献   

17.
The method of chemodestructive fractionation is suggested to assess the composition of soil organic matter. This method is based on determination of the resilience of soil organic matter components and/or different parts of organic compounds to the impact of oxidizing agents. For this purpose, a series of solutions with similar concentration of the oxidant (K2Cr2O7), but with linearly increasing oxidative capacity was prepared. Chemodestructive fractionation showed that the portion of easily oxidizable (labile) organic matter in humus horizons of different soil types depends on the conditions of soil formation. It was maximal in hydromorphic soils of the taiga zone and minimal in automorphic soils of the dry steppe zone. The portion of easily oxidizable organic matter in arable soils increased with an increase in the rate of organic fertilizers application. The long-lasting agricultural use of soils and burying of the humus horizons within the upper one-meter layer resulted in the decreasing content of easily oxidizable organic matter. It was found that the portion of easily oxidizable organic matter decreases by the mid-summer or fall in comparison with the spring or early summer period.  相似文献   

18.
In vineyards, the long-term use of copper fungicides has increased soil Cu concentrations that can adversely affect the number and activities of soil microorganisms. To better understand this phenomenon and to ameliorate such harmful effects, an incubation experiment was carried out with a sandy loam and a sandy soil to which increasing rates of CuSO4 were added. By this treatment, the basal soil respiration (7-55%) and decomposition of added vine branches (46-86%) was inhibited. At the application rate of 500 mg Cu kg?1, soil microbial biomass-C was inhibited (7-66%) in the sandy soil and stimulated (2-10%) in the sandy loam soil. The specific respiration rate was a reliable indicator for Cu stress, and it increased with time and higher Cu concentrations before lime and compost applications. Total number of bacteria and streptomycetes were also strongly inhibited. Fungal population was significantly more tolerant to copper toxicity than the bacteria. A stimulation of fungal population at a dose of 500 mg Cu kg?1 in both soils was observed. A criterion such as “stimulation” lasting for more than 60 days can also be used as indication of Cu contamination of soils. The order of inhibition (on day 125) at a dose of 500 mg Cu kg?1 soil was as follows: A. sandy loam soil (pH> 7.0) — fungi < biomass-C < basal soil respiration < bacteria < streptomycetes; B. sandy soil (pH< 6.0) — fungi < basal soil respiration < biomass-C < bacteria < streptomycetes. The application of lime increased soil recovering ability at a moderate rate (for CO2 production – 22-70% and for biomass-C- 39-156%), but the combination of lime and compost significantly increased soil resiliency (for CO2 production- 16-518% and for biomass-C- 103-693%). The soil resiliency assessed by number of bacteria in compost treatments was 30-120% in sandy loam soil and 92-700% in the sandy soil. Compost and lime application increased the number of streptomycetes from 52 to 500% in sandy loam soil and from 100 to 700% in sandy loam soil. Fungal population was less increased in sandy soil as compared to sandy loam soil. The ecological dose higher than 5% inhibition of microbial processes and microorganisms appears to be suitable to assess Cu contamination of soils. CO2 production, biomass-C and specific respiration rate were less sensitive indicators as compared to streptomycetes and bacteria. It appears that compost application effectively promoted the recovery of soil microbial activity and soil fertility of Cu contaminated soils.  相似文献   

19.
Resource islands around woody plants are thought to define the structure and function of many semiarid and arid ecosystems, but their role in patterning of soil microbial communities remains largely unexamined in dry environments. This study examined soil resource distribution and associated fungal communities in two Allocasuarina luehmannii (buloke) remnants of semiarid north-western Victoria, Australia. These savannah-like woodlands are listed as endangered due to extensive clearing for agriculture. We used the DNA-based profiling technique T-RFLP and ordination-based statistical methods to compare fungal community compositions in surface soils from two remnants (located 1.6 km apart) and three sampling positions (beneath individual buloke canopies; grassy inter-canopy areas; and adjoining cleared paddocks). Resource island formation beneath buloke trees was clearly evident in soil physicochemical properties (e.g. threefold concentrations of total carbon and nitrogen in canopy versus non-canopy soils). This heterogeneity of resources was moderately correlated with soil fungal community compositions, which were distinct for each sampling position. We argue that fungal composition patterns reflected multiple roles of fungi in dryland ecosystems, namely: responses of saprotrophic fungi to tree organic matter inputs; specificity of ectomycorrhizal fungi to tree rooting zones; and fungal involvement in biological soil crusts that variably covered non-canopy soils. Our data did not indicate that buloke canopy areas were particular hotspots of soil fungal diversity, but that they increased landscape-level diversity by supporting a distinct suite of fungi. In addition, we provide evidence of phylogenetic differentiation of soil fungal communities between our two remnants, which adds to growing evidence of fungal genetic structure at localised scales. These findings highlight the importance of remnant trees in conserving both soil resources and microbial genetic diversity. In addition, evidence of differentiation of soil fungal phylogenetics between nearby but isolated remnants suggests that conserving soil fungal diversity requires conservation of host habitats over their entire (remaining) range, and indicates previously unseen consequences of tree loss from extensively cleared landscapes.  相似文献   

20.
ABSTRACT

The neutral monosaccharide composition of forest soils differs from that of non-forest soils suggesting there is an accumulation of microbial saccharides. Ectomycorrhizal (ECM) fungi can be responsible as the fungi are typical in forest soils. We investigated neutral saccharides of ECM fungal sclerotia to determine what part it might play in the origin of forest soil polysaccarides. Sclerotial grain (SG) was collected from the O, A1 and A2 horizons of a soil of subalpine forest of Mt. Ontake, central Japan. Neutral saccharides in soil and SG were analyzed by two step hydrolysis with sulfuric acid and gas-chromatography of alditol acetate derivatives. Saccharides accounted for 6.0?16% of the SG by carbon content. The SG contained predominantly easily hydrolysable (EH)-glucose, which accounted for 75–85% of the composition depending on grain size and the soil horizon, followed by mannose (7.7?15%), galactose (2.2?4.8%) and non-easily hydrolysable (NEH)-glucose (1.7?6.1%). The SG contained all of these sugars irrespective of its size. The SG collected from the A1 and A2 horizons contained all sugar components found in that from the O horizon, except for fucose in that from A2 horizon. The monosaccharide composition of SG indicates that accumulation of ECM fungal sclerotial polysaccharides might have been responsible for enlarging the molar ratios of (galactose + mannose) /(arabinose + xylose) and EH-glucose/NEH-glucose of forest soils. The proportions of SG saccharides relative to soil saccharides were 3.6, 1.2, and 0.83% for the O, A1 and A2 horizons, respectively. These levels of the proportion are considerable as ECM fugal sclerotia are the products of a limited species among hundreds and thousands of microbial species inhabiting forest soils. The sclerotia forming ECM fungal species such as Cenococcum geophilum may be key sources of forest soil polysaccharides.  相似文献   

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