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1.
江西青岚湖五种淡水蚌遗传多样性的微卫星DNA分析   总被引：1，自引：0，他引：1  
利用北美Epioblasma capsaeformis（蚌科）和中欧Margaritifera margaritifera L.（珍珠蚌科）两种淡水双壳类的20对微卫星引物对江西青岚湖五种淡水蚌群体进行了PCR扩增，筛选出8对多态性较高的引物，并用这8个微卫星座位分别对三角帆蚌、褶纹冠蚌、洞穴丽蚌、射线裂脊蚌和中国尖嵴蚌五种蚌类群体进行了遗传多样性分析。结果表明：不同蚌类群体的平均等位基因数为2.8750～4.000，平均观测杂合度（HO）为0.4417～0.6333，平均期望杂合度（HE）为0.4430～0.5706，平均多态信息含量（PIC）为0.368～0.498，五个群体表现出较高的遗传多样性。有多个座位在不同蚌类群体中偏离哈代－温伯格平衡。五种蚌类群体间的遗传距离在0.6228与1.4724之间，三角帆蚌和褶纹冠蚌之间的遗传距离最大，射线裂脊蚌和洞穴丽蚌之间的遗传距离最小。  相似文献   

2.
Legislation regarding the labeling of processed products is an important issue in the protection of consumer rights. This labeling is especially important in products that cannot be identified on the basis of their morphological characters, because these are removed from the animal in the transformation process. The goal of this study was the identification of mussel species using Polymerase Chain Reaction-Restriction Fragment Length Polymorphism (PCR-RFLP) and Forensically Informative Nucleotide Sequencing (FINS) methodologies. The molecular marker selected was 18S rDNA (nuclear small-subunit rDNA gene), which allows identification at the genus level and at the species level in some cases. The genera included in this study were Mytilus, Perna, Aulacomya, Semimytilus, Brachidontes, Choromytilus, and Perumytilus. Different markers were used for genetic identification at the species level. To identify the species included in the genus Perna and Choromytilus, a fragment of ITS 1 (Internal Transcribed Spacer 1) was amplified by multiplex PCR and digested with restrictases. The species of Mytilus were identified by length polymorphism and RFLP of the polyphenolic adhesive protein gene. This methodology was validated with products manufactured in the authors' pilot plant and applied to commercial samples. Therefore, this sequential method can be completely or partially used to determine the mussel genus or species present in any food product.  相似文献   

3.
The Wash, in eastern England, supports internationally important populations of 11 species of shorebird. A major commercial shellfishery provides potential conflict between fishermen and nature conservation interests. During the 1990s, high fishing mortality and low recruitment substantially reduced the stocks of cockle (Cerastoderma edule) and mussel (Mytilus edulis). Population models, constructed from estimates of survival and recruitment, indicated that declines in the availability of cockles and mussels were associated with changes in oystercatcher (Haemotopus ostralegus) survival between 1970 and 1998, including three periods of mass mortality, and also the recruitment of juvenile birds to both oystercatcher and knot (Calidris canutus) populations. Emigration of knot may also have taken place. Cockle recruitment was dependent on climatic conditions, whereas mussel populations tended to be stable. The decline in mussel stocks, due to over-fishing, increased the vulnerability of the oystercatcher population to mass-mortality episodes in poor cockle years. The key to preventing major oystercatcher kills in future is to ensure sufficient mussels are available in poor cockle years. Recent cultivation of mussels in inter-tidal areas has been beneficial and is an important management tool for maintaining bird populations.  相似文献   

4.
针对海水鱼类半滑舌鳎养殖池排出水中大量絮状悬浮物难以用常规机械过滤法去除的问题,选择适应能力强的滤食性双壳贝类长牡蛎（Crassostrea gigas）和紫贻贝（Mytilus galloprovincialis）,通过现场实验测定了它们对鱼类养殖排出水中悬浮物的生物滤除能力。结果表明,在海水流速为100 L·h^-1条件下,牡蛎[壳高（9.80±0.45）cm,湿重（117.0±10.0）g]和贻贝[壳高（6.54±0.26）cm,湿重（29.7±2.4）g]对养殖排出水悬浮物的生物沉积速率分别为40.28～45.30 mg·ind^-1·d^-1[平均（43.40±2.16）mg·ind^-1·d^-1]和6.96～8.87 mg·ind^-1·d^-1[平均（7.66±0.99）mg·ind^-1·d^-1];在实验海水流速为150 L·h-1条件下,牡蛎[壳高（9.33±0.99）cm,湿重（95.8±31.4）g]和贻贝[壳高（6.39±0.91）cm,湿重（28.0±15.4）g]对悬浮物的生物沉积速率分别为13.68～22.50 mg·ind^-1·d^-1[平均（17.35±4.59）mg·ind^-1·d^-1]和 5.37～5.67 mg·ind^-1·d^-1[平均（5.55±0.15）mg·ind^-1·d^-1]。表明长牡蛎和贻贝两种双壳贝类对半滑舌鳎养殖池出水中悬浮物具备很强的生物滤除潜力,且能吸收和利用悬浮物中的有机质实现养殖废物的生物资源化利用。  相似文献   

5.
A series of carotenoids with 19- or 19'-hexanoyloxy moieties, 19'-hexanoyloxyfucoxanthin (1), 19'-hexanoyloxyfucoxanthinol (2), 19'-hexanoyloxyhalocynthiaxanthin (3), 19-hexanoyloxycrassostreaxanthin A (4), 19-hexanoyloxymytiloxanthin (5), and 19-hexanoyloxyallenicmytiloxanthin (6) were isolated from the edible part of the sea mussel, Mytilus galloprovincialis, grown in the Black Sea, Ukraine. Among them, 3, 4, and 6 were new compounds. These structures were charcterized by UV-vis, fast atom bombardment mass spectrometry, circular dichroism, and (1)H NMR spectroscopic data. They were assumed to be metabolites of 19'-hexanoyloxyfucoxanthin (1).  相似文献   

6.
A polymerase chain reaction (PCR) based approach involving the directed amplification of minisatellite DNA region (DAMD-PCR) was used to identify accession specific DNA markers and study genetic relationships between and within 15 accessions corresponding to 11 species in genus Capsicum. A touch down PCR profile and unique chemical concentration of ingredients resulted in reproducible and reliable DNA amplifications. The number of amplified products varied from 1 to 12 fragments depending on the template DNA and the primers. The DAMD-PCR technique provided a total of 38 accession specific DNA markers (diagnostic DAMD-PCR) which can be utilized in accession identification, preservation and genetic studies of Capsicum germplasm. Based on 1,292 polymorphic and monomorphic DNA markers directed with 22 minisatellite specific primers, accessions were divided into four major groups, three of which corresponded to the three distinct Capsicum complexes. Capsicum chacoense was found to be the most distinct species.  相似文献   

7.
The concentrations of selected trace metals, organotins, polychlorinated biphenyls (PCBs), and polycyclic aromatic hydrocarbons (PAHs) were determined in caged blue mussels (Mytilus edulis) during dredging operations in the Göta Älv Estuary (SW Sweden). Maximum values of pollutants in mussel tissues were found after the dredging started. Our results showed that the dredging caused mobilization of organotins from the sediments to the water column during the experimental period. Multidimensional scaling (MDS) and cluster analysis were applied to compare and establish relationships between levels of pollutants in mussels and sampling sites during the experimental period. In order to evaluate the biological effects of contaminants, genotoxic damage was measured using the Comet assay, and its potential application for environmental monitoring is discussed.  相似文献   

8.
A species of commercially obtained freshwater mussel (Elliptio complanata) was shown to actively filter, concentrate, and retain fecal coliform (FC) bacteria from a variety of freshwater stream environments. Fecal coliform densities in mussel viscera were maximum within 48 hr of in situ exposure. Significant FC reproduction did not occur in mussel viscera at temperatures below 30 °C. Variation in replicate FC determinations from mussels exposed in situ for 48 hr was less than that obtained directly from water samples. Numbers of FC concentrated in mussel viscera were retained for several hours after FC densities declined in the surrounding water, suggesting the utility of mussels to record recent episodes of fecal pollution.  相似文献   

9.
Sixteen collections of the wild Musa species, Musa balbisiana Colla collected from different regions of India were studied for their intraspecific relationships using random amplified polymorphic DNA (RAPD) markers. Out of 80 primers screened, 34 primers produced reproducible bands and four primers among them showing polymorphic bands were used. In all, 43 DNA fragments were amplified averaging 10.75 per primer. Of these, 31 amplified fragments showed polymorphism (averaging of 7.75 per primer). The extent of polymorphism (74.6%) has indicated the existence of considerable variation at the DNA level within the species. The 16 accessions were clustered into four as against seven clusters obtained through morphotaxonomic characterization. The inter relationships based on geographical origin in comparison with molecular characterization have been discussed.  相似文献   

10.
利用102对微卫星引物对5份黑麦（Secale）、4份普通小麦（Triticum aestivum）和1份分枝小黑麦（Triticale）进行SSR分析,引物Xgwm614能在分枝小黑麦中扩增出一个387bp的特异DNA片段（记为FZ387,GenBank登录号为EF179137）,而黑麦未能扩增出。序列比对结果显示该片段与一粒小麦（T. monococcum）（AY485644）和栽培二粒小麦（T. turgidum）（AY494981）A基因组中Gypsy Ty3-LTR反转座子fatima的一部分分别有94%和95%同源性。根据序列同源性比对结果,在FZ387内部设计1对特异引物FaF和FaR。引物Xgwm614F和FaR能在含有A基因组的物种中扩增出约350bp的条带（记为A350）,而其不含A基因组的物种都未扩增出该条带。利用小麦二体和端体代换系材料对其进行定位,结果显示该片段分布在所有A染色体的长臂和断臂上。此外,引物FaF和Xgwm614R能在含有A、B或AB基因组的物种中扩增出约350bp的条带（记为AB350）,而不含AB基因组的材料未扩增出目标条带。利用这两对特异引物对小麦属近缘物种进行PCR扩增,发现只有中国春能够扩增出A350和AB350。序列比对结果和FZ387两侧SSR引物结合区的规律性变化表明该反转座子在进化上可能存在属间多样性和属内相似性。A350和AB350也可以分别作为分子标记检测A染色体和AB染色体。  相似文献   

11.
Summary The use of random amplified DNA fragments as genetic markers in Coffea was investigated. Arbitrary oligonucleotides were used as primers to amplify genomic DNA of different coffee accessions representing major Coffea species by polymerase chain reaction. Intraspecific variation was easily detected in C. canephora and C. liberica whereas the primers assayed failed to reveal polymorphism between C. arabica accessions. Extensive interspecific variation was observed. Genetic relationships between Coffea species are deduced from the degrees of similarity in amplified product profiles. Random amplified DNA markers appeared to be of high value for characterization, analysis and utilization of coffee genetic resources.  相似文献   

12.
DNA from twenty-three late maturing cultivars of Guinea yams (D. cayenensis/D. rotundata complex) from the Benin Republic that could not be separated using isozyme markers, were examined using randomly amplified polymorphic DNA (RAPD) markers with decamer primers of arbitrary sequence. All the twelve primers tested were informative and yielded 63 amplified DNA bands from which 47 (75%) were polymorphic. Although no single primer produced polymorphic bands in all cultivars, the great majority of the cultivars were separated with the combinations of polymorphic bands generated by various primers. Putative duplicates and cultivar misclassifications were identified. Many morphologically distinct cultivars were close. The dwarf cultivar Tam-Sam considered as derived from Tabane, appeared more distant from the latter than was believed. RAPD analysis was found as a practical tool for the identification of duplicates toward establishment of an accurate core collection of Guinea yams in Benin Republic and in the other countries of the African yam belt.  相似文献   

13.
The extent of pollution with organotin compounds was investigated in water, sediment and bivalve mussels (Mytilus galloprovincialis) from the Northern Adriatic Sea. Butyl-, phenyl- and octyltin species were quantified after extraction and derivatisation by gas chromatography–mass spectrometry in a total of 99 samples from the period from 2000 to 2006. The accuracies of the analytical procedures were checked by spiking of unpolluted water samples and by the analysis of standard reference materials (harbour sediment PACS-2 and mussel tissue ERM-CE 477). Among organotin species analysed in samples butyltins were the predominant. Tributyltin was found to be present in the highest concentrations, suggesting its recent input into the marine environment. Butyltins were detected at all sites surveyed (sum of butyltins was up to 718 ng Sn L?1, 3,552 ng Sn g?1 d.w. and 9,991 ng Sn g?1 d.w. in water, sediment and mussel samples, respectively), phenytins in much lower concentrations (up to 31 ng Sn L?1, 326 ng Sn g?1 d.w. and 442 ng Sn g?1 d.w. in water, sediment and mussel samples) and to a much smaller extent, while octyltins were not detected at any location. The spatial distribution of tributyltin was closely related to boating, with the highest concentrations found in marinas (up to 586 ng Sn L?1 for water samples, 1,995 ng Sn g?1 d.w. for sediment and 6,434 ng Sn g?1 d.w. for mussel samples). The temporal distribution clearly indicates a decrease of organotin pollution at all sites.  相似文献   

14.
利用ISSR标记技术分析了28份香蕉种质的遗传多态性。从100个ISSR引物中筛选出8个多态性引物,共扩增出55条DNA带,其中46条为多态性带,占83.6%,平均每个引物扩增的DNA带数为6.88条。依相似系数0.73的水平,将香蕉28个品种划分为6大类。其中云南BB（BB）和东莞高把大蕉（ABB）在相似系数为0.94时,二者的亲缘关系较近。Pisang Ceylan（AAB）和FHIA-18（AAAB）相似系数水平接近为1,表明二者亲缘关系最近。本研究为香蕉遗传关系的建立及品种鉴定提供理论基础。  相似文献   

15.
DNA fingerprinting of known cultivars may provide much-needed data to assist with the identification of such cultivars. From 86 pairs of expressed sequence tag SSRs (EST-SSR) and 45 start-codon targeted polymorphism (SCoT) primers, eight pairs of EST-SSR primers and seven SCoT primers were chosen to construct the DNA fingerprinting of six Hemarthria cultivars in this study. Using genomic DNA from six cultivars, a total of eight pairs of EST-SSR primers were able to amplify 193 bands, producing an average of 24.1 bands per primer pair. The percentage of polymorphic bands (PPB) was 83.4 %, and the polymorphism information content (PIC) ranged from 0.480 to 0.695, with an average of 0.602. A total of seven SCoT primers amplified 105 bands with an average of 15 bands per sample. The PPB was 84.8 %, and the PIC ranged from 0.471 to 0.758, with an average of 0.612. The unweighted pair-group method with arithmetic mean dendrogram from EST-SSR and SCoT markers grouped the six Hemarthria cultivars into two major groups of the same. These clusters are in accordance with their known species and origin. Our results indicate a rich genetic diversity in these six Hemarthria cultivars. The six cultivars we assayed could be easily identified using these eight pairs of EST-SSR and seven pairs of SCoT primers.  相似文献   

16.
The 5S intergenic spacers were amplified using a common pair of primers and sequenced from four species (Brassica napus, Zea mays, Helianthus annuus, and Glycine max). Crop-specific assays were developed from primers designed from the spacers and tested to amplify corresponding DNAs in both conventional end-point and real-time polymerase chain reactions (PCRs). The high copy numbers of the 5S DNA in plants make it possible to detect very small amounts of DNA using this marker. This sensitivity made it possible to compare different DNA extraction methods for highly processed food products using 5S spacers, even allowing dilution of templates to overcome PCR inhibition.  相似文献   

17.
In order to elucidate the details of both the distribution and fate of organotin compounds (OTs) in the costal ecosystem, the concentrations of butyltin compounds (BTs) and phenyltin compounds (PTs) were determined in seawater, sediment and blue mussels Mytilus galloprovincialis collected in Maizuru Bay, Japan. The concentrations of tributyltin (TBT) in seawater, sediments and mussels ranged from 3.9 to 27 ng l?1, from 1.2 to 19 ng g?1 dry wt and from 0.77 to 11 ng g?1 wet wt, respectively. Although the levels of TBT in seawater, sediments and mussels from Maizuru Bay were lower than those reported previously at other sites in Japan, the levels can still be toxic to susceptible organisms. Trace amounts of PTs were also found in seawater, sediment and mussel samples, indicating that there is a slight input of triphenyltin (TPT) into the seawater in the bay at present. The highest TBT concentration in seawater among all sites measured in the bay was found near a glass factory, and the lowest concentrations were observed at the center of the bay. The highest concentration of TBT in sediment was detected near a shipyard. In mussels, a high concentration of TBT was detected near a cement plant and timberyard. These results indicate that the major sources of contamination of OTs in the bay are considered to be from those facilities and ships. The proportion of TBT in seawater and mussels showed that, of total BTs, it was the predominant compound at most sites. These results suggested that there is a continuous input of TBT into the seawater and thereafter an accumulation of TBT in mussels due to their low metabolic capacity to degrade TBT. In sediment, the proportion of monobutyltin (MBT) was the highest of BTs at most sites. This could reflect a previous contamination by TBT used before the regulation of its usage in the bay.  相似文献   

18.
Specific primers can be used in polymerase chain reactions (PCR) to amplify prey DNA from the gut content of generalist predators at high specificity and sensitivity. A prerequisite for applying this approach to field studies, however, is to confirm that primers are actually targeting specific prey species or prey groups and do not produce false positive results by amplifying DNA either from predator species or from the wide range of potential alternative prey found under natural conditions. Here, we report on a new group-specific primer pair for earthworms designed from cytochrome oxidase c subunit 1 (COI) sequences of 11 earthworm species found in Central Europe that can be used to detect consumption of earthworms by invertebrate predators. Besides inter-specific also considerable intra-specific variation was found for COI sequences among most of the earthworm species. We, therefore, combined a universal forward primer with an earthworm-specific reverse primer which amplified a 523 bp product from all 11 species tested. Earthworm DNA amplification was also successful in the presence of excess DNA of a predator species. The primer pair was tested against 82 non-target invertebrate species commonly found in the same habitats, including potential prey for generalist predators and predators themselves. The earthworm primer was highly specific: only one of the non-target species showed a product of similar length as the earthworms, whereas PCR with 12 non-target species produced amplicons whose length differed from that of earthworms. We conclude that the new primer will be a useful tool to investigate the role earthworms play as a food resource in soil food-webs. Moreover, we suggest that future studies utilizing DNA-based approaches for prey detection should select non-target species for cross-reactivity tests according to their abundance and importance rather than choosing representatives of taxonomic units; this will help validate the results achieved using species- or group-specific primers and guarantee their meaningful ecological interpretation.  相似文献   

19.
We investigated relationships of biotic and abiotic factors to recruitment patterns of the endangered freshwater pearl mussel (Margaritifera margaritifera) in 10 Swedish streams. We found that the maximum proportion of gravid mussels did not differ between streams with and without recent recruitment. Moreover, the mean glochidial load on trout (Salmo trutta), which was positively related to adult mussel density, did not differ significantly between these stream types. Thus, the larval stages of the freshwater pearl mussel were not related to recruitment failure. Instead, recruitment is probably hindered at the next stage in the life history of the mussels, the benthic stage, and may be related to sedimentation as turbidity was four times greater in streams lacking recent recruitment than in streams with recent recruitment. Furthermore, we found that juvenile mussel density was positively related to the number of glochidial infections per stream area in streams with ongoing recruitment, indicating that successful recruitment in these streams may depend on both mussel and trout density. Future research should thus examine biotic interactions between mussels and trout as well as the effects of sedimentation on benthic-living mussels.  相似文献   

20.
Li  Mingming  Zhu  Jianyu  Gan  Min  Wang  Qianfen  Jie  Shiqi  Chai  Liyuan 《Water, air, and soil pollution》2014,225(8):1-13
Water, Air, &; Soil Pollution - Mussel (Mytilus galloprovincialis (Lamarck, 1819)) is directly exposed to sea water contamination that elicits significant physiological and cellular response,...  相似文献   

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