共查询到20条相似文献，搜索用时 31 毫秒
1.
Abdelhameed Elameen Siri Fjellheim Arild Larsen Odd Arne Rognli Leif Sundheim Susan Msolla Esther Masumba Kiddo Mtunda Sonja S. Klemsdal 《Genetic Resources and Crop Evolution》2008,55(3):397-408
Sweet potato (Ipomoea batatas L.) is the fifth most important crop in the developing countries after rice, wheat, maize and cassava. The amplified fragment
length polymorphism (AFLP) method was used to study the genetic diversity and relationships of sweet potato accessions in
the germplasm collection of Sokoine University of Agriculture, Morogoro and Sugarcane Research Institute, Kibaha, Tanzania.
AFLP analysis of 97 sweet potato accessions using ten primer combinations gave a total of 202 clear polymorphic bands. Each
one of the 97 sweet potato accessions could be distinguished based on these primer combinations. Estimates of genetic similarities
were obtained by the Dice coefficient, and a final dendrogram was constructed with the un-weight pair-group method using arithmetic
average. AFLP-based genetic similarity varied from 0.388 to 0.941, with a mean of 0.709. Cluster analysis using genetic similarity
divided the accessions into two main groups suggesting that there are genetic relationships among the accessions. Principal
Coordinate analysis confirmed the pattern of the cluster analysis. Analysis of molecular variance revealed greater variation
within regions (96.19%) than among regions (3.81%). The results from the AFLP analysis revealed a relatively low genetic diversity
among the germplasm accessions and the genetic distances between regions were low. A maximally diverse subset of 13 accessions
capturing 97% of the molecular markers diversity was identified. We were able to detect duplicates accessions in the germplasm
collection using the highly polymorphic markers obtained by AFLP, which were found to be an efficient tool to characterize
the genetic diversity and relationships of sweet potato accessions in the germplasm collection in Tanzania. 相似文献
2.
Germplasm conserved as seeds in genebanks requires regular regeneration. In this process, selection and genetic drift may cause loss of genetic diversity from accessions. In the case of selfing crops, separation of distinct lines into different accessions may be an efficient strategy to avoid these negative effects. In order to evaluate the applicability of this method for collection management, knowledge about the level of intra-accession genetic diversity is required. By means of AFLP analysis intra-accession variation was investigated in two cultivars, two landraces and two wild populations of ex situ conserved barley germplasm. In the total sample of 216 individuals analysed (36 per accession), 22 genotypes were observed based on 104 polymorphic loci. The number of genotypes detected ranged from 1 to 3 per accession, except for a Nepalese landrace that revealed 12 genotypes. An UPGMA cluster analysis grouped the genotypes unambiguously into the accession they belonged to and genotypes within accessions were generally found to be closely related. In order to determine the repeatability of the results obtained, 11 individuals belonging to 4 genotypes from the Nepalese landrace were scored for a second set of AFLP markers. Matrices of genetic distances calculated for the two AFLP datasets were found to be highly correlated (r = 0.9346, P < 0.001). Separation of genotypes into different accessions was considered a relevant option only for the Nepalese landrace. Analysis of molecular variance indicated that this accession could be well divided into 8 distinct lines. Further implications of the results for genebank practices are discussed. 相似文献
3.
F. Shan H. J. Clarke G. Yan J. A. Plummer K. H. M. Siddique 《Genetic Resources and Crop Evolution》2007,54(3):519-527
Wild annual Cicer gene pools contain valuable germplasm for chickpea improvement programs. Previous research showed that duplication might
exist in accessions collected from these gene pools, which would hinder chickpea breeding and related research. AFLP (amplified
fragment length polymorphism) markers were used to fingerprint the world collections of the primary and secondary gene pools
including C. reticulatum Lad., C. bijugum K.H. Rech., C. judaicum Boiss. and C. pinnatifidum Jaub. et Sp. Duplicates were detected in a total of 24 accessions in both the gene pools, highlighting the necessity to fingerprint
the germplasm. Genotypic difference was detected as gene pool specific, species specific and accession specific AFLP markers.
These were developed into fingerprinting keys for accession identification between and within species and gene pools. Use
of AFLP markers to detect duplicates and to identify accessions is a reliable method which will assist in the characterisation
and use of wild annual Cicer germplasm in chickpea improvement programs. We recommend the procedure presented in this paper as a standard approach for
the precise genetic identification and characterisation of future world collections of wild Cicer, to keep germplasm integrity and to benefit chickpea breeding and related research programs. 相似文献
4.
Octaviano Igor Yelome Kris Audenaert Sofie Landschoot Alexandre Dansi Wouter Vanhove Drissa Silue Patrick Van Damme Geert Haesaert 《Genetic Resources and Crop Evolution》2018,65(6):1615-1624
The main goal of this study is to gain insight into the relationship between the genetic profile of cultivated rice (Oryza spp.) accessions and their resistance to rice blast. Therefore, the genetic and phenotypic variability of a set of 350 cultivated rice accessions originating from Africa (Benin, Mali and Nigeria, Ivory Coast etc.) was examined. Seventy-seven fluorescent amplified fragment polymorphism (AFLP) markers were used to gain insight into the genetic variation and to classify the germplasm collection. In addition, the rice germplasm was assessed for its resistance to blast disease caused by Pyricularia oryzae in upland field conditions. Huge differences in responses of rice accessions to P. oryzae were observed, ranging from highly susceptible to highly resistant. Twelve percent of all accessions were highly resistant to P. oryzae. Based on their AFLP marker profile these highly resistant accessions could be separated from the other accessions. Stepwise regression revealed that the best prediction of the blast resistance level was achieved with a maximum number of 13 AFLP markers. Marker CTA22 was the most important for accurate prediction of blast resistance, this marker was present in all highly resistant accessions. It can be concluded that AFLP markers are a valuable tool to screen rice accessions for their susceptibility towards blast disease and that, based on a subset of markers, it is possible to predict the resistance to rice blast. 相似文献
5.
6.
Pedro Talhinhas José Leitão João Neves-Martins 《Genetic Resources and Crop Evolution》2006,53(3):563-578
Lupinus angustifolius L. is a Mediterranean species, domesticated in the 20th century, representing an important grain legume crop in Australia
and other countries. This work is focused on the collection of wild germplasm and on the characterisation of morphological
and molecular diversity of germplasm accessions. It reports the collection of 81 wild L. angustifolius accessions from the South and Centre of Portugal, available at the ‘Instituto Superior de Agronomia Gene Bank’, with subsequent
morphological and molecular characterisation of a selection of these and other accessions. A multivariate analysis of morphological
traits on 88 L. angustifolius accessions (including 59 wild Portuguese accessions, 15 cultivars and 14 breeding lines) showed a cline of variation on wild
germplasm, with plants from Southern Portugal characterised by earlier flowering, higher vegetative development and larger
seeds. AFLP and ISSR molecular markers grouped modern cultivars as sub-clusters within the wider diversity of wild germplasm,
revealing the narrow pool of genetic diversity on which domesticated accessions are based. The importance of preserving, characterising
and using wild genetic resources for L. angustifolius crop improvement is outlined by the results obtained. 相似文献
7.
Jane M. Marita Julie M. Rodriguez James Nienhuis 《Genetic Resources and Crop Evolution》2000,47(5):515-526
The development of a core collection, one which represents the genetic diversity of a crop with minimal redundancy and increases utility of the collection as a whole, is especially important as the funding for germplasm collections decreases. With limited resources, it is difficult to manage large germplasm collections and disperse genetically diverse germplasm to plant breeders. An algorithm was developed to assist in selection of core collections based on estimates of genetic distance. The criteria for selection of the maximum genetically diverse set were based on rankings of genetic distance between an accession with respect to all other accessions. Depending on the size core which a user wished, a zone around each selected accession was determined and no other accession within these limits was selected. The premise for the algorithm was that the genetic variability represented in the core must be representative of the distribution of genetic distances within the population of interest. In the present study, the algorithm was used with RAPD-marker-based estimates of genetic distance for 270 Theobroma cacao L. accessions and 134 Capsicum accessions that chose a set representing 18.5% of the population and representing the breadth of RAPD-based variation. 相似文献
8.
Forty-seven samples of date palm (Phoenix dactylifera L.) collected from eight locations in Egypt were studied using four sets of amplified fragment length polymorphism (AFLP)
markers with near infrared fluorescence labeled primers. These samples belonged to 21 named accessions and 9 of unknown pedigrees.
A total of 350 bands were scored and 233 (66.6%) were polymorphic. Twenty-seven Egyptian accessions and ‘Medjool’and ‘Deglet
Noor’accessions from California could beclassified into the major cluster. This major cluster may represent a major group
of date palm germplasm in North Africa. There were four other clusters, each containing one or two accessions. The variety
‘Halawy’and one accession of unknown provenance were most likely from hybridization between two clusters. Six groups of accessions
of which had the same names, revealed similar but not identical AFLP profiles suggesting these accessions might derive from
seedlings rather thanthrough clonal offshoot propagation. 相似文献
9.
Information on the variation available for different plant attributes has enabled germplasm collections to be effectively utilised in plant breeding. A world sourced collection of white clover germplasm has been developed at the White Clover Resource Centre at Glen Innes, New South Wales. This collection of 439 accessions was characterised under field conditions as a preliminary study of the genotypic variation for morphological attributes; stolon density, stolon branching, number of nodes, number of rooted nodes, stolon thickness, internode length, leaf length, plant height and plant spread, together with seasonal herbage yield. Characterisation was conducted on different batches of germplasm (subsets of accessions taken from the complete collection) over a period of five years. Inclusion of two check cultivars, Haifa and Huia, in each batch enabled adjustment of the characterisation data for year effects and attribute-by-year interaction effects. The component of variance for seasonal herbage yield among batches was large relative to that for accessions. Accession-by-experiment and accession-by-season interactions for herbage yield were not detected. Accession mean repeatability for herbage yield across seasons was intermediate (0.453). The components of genotypic variance among accessions for all attributes, except plant height, were larger than their respective standard errors. The estimates of accession mean repeatability for the attributes ranged from low (0.277 for plant height) to intermediate (0.544 for internode length).Multivariate techniques of clustering and ordination were used to investigate the diversity present among the accessions in the collection. Both cluster analysis and principal component analysis suggested that seven groups of accessions existed. It was also proposed from the pattern analysis results that accessions from a group characterised by large leaves, tall plants and thick stolons could be crossed with accessions from a group that had above average stolon density and stolon branching. This material could produce breeding populations to be used in recurrent selection for the development of white clover cultivars for dryland summer moisture stress environments in Australia. The germplasm collection was also found to be deficient in genotypes with high stolon density, high number of branches, high number of rooted nodes and large leaves. This warrants addition of new germplasm accessions possessing these characteristics to the present germplasm collection. 相似文献
10.
Sergio Lanteri Alberto Acquadro Luciana Quagliotti Ezio Portis 《Genetic Resources and Crop Evolution》2003,50(7):723-735
In several regions of Italy as well as other parts of southern Europe, the heterogeneity of the land, the climate and the soil favour the survival in cultivation of a large number of landraces specifically adapted to local conditions. Knowledge on the level and distribution of their genetic variation can help to develop appropriate strategies, in order to suistainably manage in situ these germplasm resources at risk of genetic erosion. C. annuum is an herbaceous diploid species and is considered to be self-pollinating, although different rates of out-crossing have been recorded. We used random amplified polymorphic DNA (RAPD) and amplified fragment length polymorphism (AFLP) markers to assess genetic diversity within and between five populations of a landrace of Capsicum annuum L., grown in a limited area in north-west Italy and locally known as Cuneo pepper. Partitioning the genetic variation with Shannon's diversity index revealed that 41.6% occurred between and 58.4% within populations. Analogous results were obtained when the analysis was based only on RAPD or AFLP markers. However, AFLP was more reliable, since a lower range of variation was observed among primer combinations in detecting the two components of genetic variation. Notwithstanding the rather high level of within genetic variation detected, the five populations were clearly differentiated and differed in the frequency of alleles exclusive and/or present at very low frequencies. Our results show the need for accurate estimation of allele frequencies, in order to identify populations to which priority should be given for dynamic conservation of landraces. 相似文献
11.
12.
13.
The management of genebank collections of cultivated potato is costly due to the need for in vitro maintenance and virus eradication. Therefore, it is important to set up conservation strategies, which prevent duplicates
entering the collections. In this study, 32 Nordic potato landraces were studied for 57 morphological traits and analysed
for amplified fragment length polymorphism (AFLP). Most landraces could be distinguished based on the morphological characters,
except five accessions. Using five primer combinations to generate 114 reproducible AFLPs, of which 63 (55%) were polymorphic,
the five morphologically indistinguishable accessions were placed into two groups with identical AFLP patterns, suggesting
that some of the accessions were redundant for long-term preservation. The AFLP data showed that the Nordic collection of
potato landraces is composed of genetically different clones, and morphological analysis revealed a wide range of variability.
This variability seems to be distributed randomly over the Nordic region since the cluster analysis based on AFLPs and morphological
traits revealed no grouping based on the country of origin. Principal component analysis suggests that fewer morphological
traits than used in this study will be sufficient to discriminate between different genotypes of cultivated potato (Solanum tuberosum L.). Future possibilities for rationalising potato collections are discussed. 相似文献
14.
15.
Summary A Cannabis germplasm collection was evaluated for traits relevant to the use of hemp as an arable source of paper pulp. The traits were related to stem yield and quality, psychoactive potency, resistance to root-knot nematodes and plant morphology. The present study is directed at diversity for these traits considered together. For the interpretation of diversity patterns, accessions were grouped on the basis of the presumed purpose and status of domestication resulting in the recognition of four plant-use groups: fibre cultivars, fibre landraces, drug strains, and truly wild or naturalized populations. Principal component analysis showed that stem quality, phenological development, psychoactive potency and host reactions to root-knot nematodes explained most of the total variation among accessions. The plant-use groups were reasonably well separated in the principal component space. Discriminant analysis showed that the a priori defined plant-use groups could be discriminated quite well on the basis of linear combinations of all agronomic and morphological traits. The contents of bark fibre and cannabinoids had the highest grouping value. Reallocations concerned mainly old fibre cultivars which were placed in the group of fibre landraces due to a low content of bark fibre.A genetic characterization of accessions was based on electrophoretic patterns of seed proteins. Isoelectric ocusing patterns of bulk seed extracts showed variation for the presence of six out of 45 protein bands in the H range from 4.75 to 6.40. Banding patterns were however independent from any grouping based on origin or gronomic and morphological traits and did not reflect expected common ancestry of accessions. 相似文献
16.
Wild melon diversity in India (Punjab State) 总被引：1，自引：1，他引：0
Anamika Roy S. S. Bal M. Fergany Sukhjeet Kaur Hira Singh Ajaz A. Malik Jugpreet Singh A. J. Monforte N. P. S. Dhillon 《Genetic Resources and Crop Evolution》2012,59(5):755-767
We present here the first comprehensive genetic characterization of wild melon accessions from northern India. The genetic diversity among 43 wild melon accessions collected from the six agro-ecological regions of the Punjab State of India was assessed by measuring variation at 16 Simple Sequence Repeat (SSR) loci, morphological traits of plant habit and fruit morphological traits, two yield-associated traits, root nematode resistance and biochemical composition (ascorbic acid, carotenoids, titrable acidity). Variation among accessions was observed in plant habit and fruit traits and wild melon germplasm with high acidity and elevated carotenoid content and possessing resistance to Meloidogyne incognita was identified in the collection. A high level of genetic variability in wild melon germplasm was suggested by SSR analysis. Comparative analysis using SSRs of the genetic variability between wild melons from the north and other melons from the south and east regions of India and also reference accessions of cultivated melon from Spain, Japan, Korea, Maldives, Iraq and Israel, showed regional differentiation among Indian melon accessions and that Indian germplasm was not closely related to melon accessions from other parts of the world. A highly drought tolerant accession belonging to var. agrestis Naud. was also identified. 相似文献
17.
Robert R. Wieners Shui-zhang Fei Richard C. Johnson 《Genetic Resources and Crop Evolution》2006,53(8):1531-1541
Kentucky bluegrass (Poa pratensis L.) is an important turf and forage grass species with a facultative apomictic breeding behavior. In this study, mature seed
and leaf tissue from 38 accessions of a USDA core collection of Kentucky bluegrass were analyzed with flow cytometry to characterize
the reproductive mode and DNA content for each accession. Major reproductive pathways for each accession were determined based
upon the presence and the position of the peaks observed and the known methods of reproduction for Kentucky bluegrass. While
the majority of the accessions exhibited facultative apomictic reproductive behavior with a combination of reduced, zygotic
and unreduced, parthenogenic embryo production, obligate sexual or obligate apomictic accessions were also found to be present
in this core collection. In addition, reduced, parthenogenic and unreduced zygotic embryos were also detected in several accessions.
Flow cytometric analysis of somatic tissue revealed a large range of DNA variation within this core collection. We also examined
the sensitivity of flow cytometry in analyzing bulked samples containing a large number of plants with varied DNA content
and determined that flow cytometry can effectively detect a plant having a different DNA content within a 15-plant bulk sample.
Overall the combination of mature seed and somatic tissue analysis generated important information for the Kentucky bluegrass
core collection and can be an effective and affordable tool to characterize even greater numbers of Kentucky bluegrass accessions. 相似文献
18.
Ahmed Mliki Jack E. Staub Sun Zhangyong Abdelwahed Ghorbel 《Genetic Resources and Crop Evolution》2003,50(5):461-468
Genetic diversity among 26 cucumber (Cucumis sativus L. var. sativus) accessions from five African countries [Algeria (1), Egypt (21), Ethiopia (2), Kenya (1), and Libya (1)] present in the U.S. National Plant Germplasm System (NPGS) were examined by assessing variation at 71 polymorphic random amplified polymorphic DNA (RAPD) loci. Genetic distances (GD; simple matching coefficient) were estimated among these African accessions and a reference array (RA) of 21 accessions representative of the genetic variation in cucumber. GD among African accessions ranged between 0.41 and 0.97. GD among accessions in the reference array ranged between 0.36 and 0.88. Multivariate analysis identified three distinct groupings (1–3) of African accessions; Group 1 contained 21 accessions (Egypt, Ethiopia and Libya), Group 2 consisted of two accessions (Kenya, Algeria), and Group 3 possessed three accessions (Egypt). These groupings were distinct from each other (P > 0.001). Accessions in Group 1 differed genetically from all other accessions examined (P > 0.01), and accessions in Groups 2 and 3 were uniquely associated with several RA accessions. While GD among accessions in Group 1 ranged between 0.52 and 0.90, distances among Group 2 accessions varied between 0.93 and 0.97. The GD between the two accessions in Group 3 was 0.65. An accession from Syria (PI 181874) and from one Turkey (PI 199383) were genetically more similar to accessions in Group 1 than to other accessions in the RA. Likewise, accessions in Group 2 were genetically similar to two RA accessions from China and a European glasshouse cucumber line, and Group 3 accessions showed genetic affinities with the U.S. market class cultivar Dasher II. Data suggest that some Egyptian accessions (Group 1) possess unique genetic variation, that this germplasm has potential for broadening the genetic base of commerical cucumber, and that further collection of African germplasm is likely to enhance genetic diversity of cucumber in NPGS. 相似文献
19.
Fifty six germplasm accessions of the important East African fodder crop Napier grass, Pennisetum purpureum, and its hybrids with P. glaucum, were characterised using 67 random amplified polymorphic DNA (RAPD) fragments. No or very low intra-accession variation was found for 49 of the accessions examined, confirming field observations that this species is predominantly clonally propagated. Comparison of intra and inter-accession variation identified several groups of identical/similar accessions that could be targeted if the collection is to be rationalised, and also highlighted two misplantings of germplasm material during transfer to a field trial site. A neighbour joining dendrogram of Jaccard's similarity estimates, clearly separated 50 accessions of P. purpureum from three P. glaucum individuals, and placed six hybrid accessions in an intermediate position. These groupings were well supported by a nested AMOVA (P<0.001; 29.5% of total variance due to taxonomic delineation). The main group of P. purpureum individuals could be further differentiated into five sub-groups (designated East Africa, Southern Africa, USA1, USA2 and Miscellaneous, to reflect the majority membership of sub-groups) and examination of the within P. purpureum component of the nested AMOVA, found them to be significantly different (P<0.001; 18.8% of variance). Genetic diversity across all accessions was found to be fairly high (Shannon's diversity index 0.306) and thus the collection probably represents a wide genetic base for this species. In addition to germplasm accessions, 25 Kenyan farm clones were also analysed. A principal coordinate analysis found that all but one of the clones clustered with the main P. purpureum group of accessions, indicating that the majority are probably not interspecific hybrids. The origin and pedigree of clones is discussed based on genetic similarity amongst clones and to germplasm accessions. 相似文献
20.
M. Costea D. M. Brenner F. J. Tardif Y. F. Tan M. Sun 《Genetic Resources and Crop Evolution》2006,53(8):1625-1633
The ‘Morelos’ accessions of Amaranthus from Mexico demonstrate taxonomic ambiguity at the basic morphologic level. The main cause is the enormous morphological
and genetic variation exhibited by the species in the genus. Although basic morphological criteria can be applied to herbarium
specimens or germplasm collections for quick taxonomic identification, the morphological data alone can be misleading. To
ascertain the taxonomic identity of the ‘Morelos’ accessions and their hypothesized species affiliation to Amaranthus caudatus or Amaranthus cruentus, we conducted a comparative analysis of phylogenetic relationships among these taxa/accessions using amplified fragment length
polymorphism (AFLP) and micromorphology methods. Based on AFLP data, all the controversial ‘Morelos’ accessions can be consistently
placed into a single A. cruentus species clade, which is clearly separated from the A. caudatus species clade. The AFLP-based phylogenetic relationship of ‘Morelos’ and delimitation of A. cruentus and A. caudatus are further supported by micromorphology, showing that the combination of these techniques can provide more reliable data
for germplasm identification than each method used alone. 相似文献