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1.
Biofumigation is considered a good alternative to chemical fumigation because it can control crop pathogens and diseases with lower health and environmental risks than chemical fumigants. Glucosinolates are volatile compounds found in most Brassica species, and when hydrolysed, it forms a range of natural toxins including isothiocyanates that act as biofumigants. However, the effect of glucosinolates and their breakdown products on non-target and beneficial soil organisms is not well documented. Three biofumigants, broccoli, mustard and oilseed radish, were evaluated for their effect on earthworms (Eisenia andrei) and the soil microbial community. Sub-lethal endpoints, including growth and reproductive success of the earthworms, were monitored. Genotoxicity of the biofumigants towards earthworms was evaluated by means of the comet assay. Broccoli reduced earthworm reproduction while mustard induced more DNA strand breaks in earthworm cells compared to the control. Soil microbial community function and structure were evaluated by means of community level physiological profiling and phospholipid fatty acid analyses. The effects exerted by the biofumigants on the microbial community were the most pronounced within the first 14 days after application. Carbon substrate utilisation was most affected by the oilseed radish treatment and microbial community structure by the mustard treatment.  相似文献   

2.
接种蚯蚓对加入不同植物残体土壤微生物特性的影响   总被引：1，自引：0，他引：1  
于建光  胡锋  李辉信  王同  王前进 《土壤》2012,44(4):588-595
通过室内试验,研究不同类型土壤和植物残体施用下接种蚯蚓对土壤微生物群落组成及活性的影响,为将蚯蚓引入农田及水土流失区提供理论依据。供试土壤为黏粒含量较低的灰潮土和黏粒含量较高的典型红壤,供试植物残体为高碳氮比的玉米秸秆和低碳氮比的三叶草,供试蚯蚓为体型较大的威廉腔环蚓(Metaphire guillelmi)。结果表明:接种蚯蚓对微生物量碳(MBC)无显著影响;不同土壤无论是否施用植物残体,接种蚯蚓均使土壤基础呼吸(BR)显著增大,尤其是不施用植物残体时;两种土壤中不施用植物残体和施用三叶草时,接种蚯蚓均使代谢熵(qCO2)增大,而施用玉米秸秆接种蚯蚓使qCO2有下降趋势。Biolog孔平均颜色变化(AWCD)在接种蚯蚓时均增大,基质利用丰富度(S)和多样性指数(H)也增大,且未施用秸秆时的变化较为明显;主成分分析(PCA)表明接种蚯蚓后土壤微生物群落组成与结构发生了明显变化。土壤微生物群落特性变化受蚯蚓、土壤及植物残体间交互作用的影响。  相似文献   

3.
Biopores are hotspots of nutrient mobilisation and shortcuts for carbon (C) into subsoils. C processing relies on microbial community composition, which remains unexplored in subsoil biopores. Phospholipid fatty acids (PLFAs; markers for living microbial groups) and amino sugars (microbial necromass markers) were extracted from two subsoil depths (45–75 cm ; 75–105 cm) and three biopore types: (I) drilosphere of Lumbricus terrestris L., (II) 2-year-old root biopores and (III) 1.5-year-old root biopores plus six 6 months of L. terrestris activities. Biopore C contents were at least 2.5 times higher than in bulk soil, causing 26–35 times higher Σ PLFAs g-1 soil. The highest Σ PLFAs were found in both earthworm biopore types; thus, the highest soil organic matter and nutrient turnover were assumed. Σ PLFAs was 33% lower in root pores than in earthworm pores. The treatment affected the microbial community composition more strongly than soil depth, hinting to similar C quality in biopores: Gram-positives including actinobacteria were more abundant in root pores than in earthworm pores, probably due to lower C bioavailability in the former. Both earthworm pore types featured fresh litter input, promoting growth of Gram-negatives and fungi. Earthworms in root pores shifted the composition of the microbial community heavily and turned root pores into earthworm pores within 6 months. Only recent communities were affected and they reflect a strong heterogeneity of microbial activity and functions in subsoil hotspots, whereas biopore-specific necromass accumulation from different microbial groups was absent.  相似文献   

4.
Biochar application to arable soils could be effective for soil C sequestration and mitigation of greenhouse gas (GHG) emissions. Soil microorganisms and fauna are the major contributors to GHG emissions from soil, but their interactions with biochar are poorly understood. We investigated the effects of biochar and its interaction with earthworms on soil microbial activity, abundance, and community composition in an incubation experiment with an arable soil with and without N-rich litter addition. After 37 days of incubation, biochar significantly reduced CO2 (up to 43 %) and N2O (up to 42 %), as well as NH4 +-N and NO3 ?-N concentrations, compared to the control soils. Concurrently, in the treatments with litter, biochar increased microbial biomass and the soil microbial community composition shifted to higher fungal-to-bacterial ratios. Without litter, all microbial groups were positively affected by biochar × earthworm interactions suggesting better living conditions for soil microorganisms in biochar-containing cast aggregates after the earthworm gut passage. However, assimilation of biochar-C by earthworms was negligible, indicating no direct benefit for the earthworms from biochar uptake. Biochar strongly reduced the metabolic quotient qCO2 and suppressed the degradation of native SOC, resulting in large negative priming effects (up to 68 %). We conclude that the biochar amendment altered microbial activity, abundance, and community composition, inducing a more efficient microbial community with reduced emissions of CO2 and N2O. Earthworms affected soil microorganisms only in the presence of biochar, highlighting the need for further research on the interactions of biochar with soil fauna.  相似文献   

5.

Purpose

Endogeic earthworms play a significant role in biogeochemical cycles due to the large amount of soil they ingest, and because after transit through their guts, casts usually show differences in nutrient contents and microbial populations with bulk soil. Here, we studied how three endogeic earthworm species, Postandrilus majorcanus, Postandrilus sapkarevi and Postandrilus palmensis, inhabiting soils in Majorca island (Balearic Islands, W Mediterranean), modify nutrient pools and microbial communities of soil.

Materials and methods

To do this, we analysed C, N and P pools, microbial biomass (phospholipid fatty acids, PLFA) and microbial activity (fluorescein diacetate hydrolysis, FDA) in paired samples of bulk soil and fresh casts.

Results and discussion

The mineral and organic N contents were generally enhanced in casts produced by all three earthworm species. However, inorganic P and organic C contents were only higher in P. sapkarevi (32 %, only P) and P. majorcanus casts (100 % for both soil nutrient pools) than in bulk soil. Bacterial and fungal biomass were only higher than in bulk soil in P. majorcanus casts (65 and 100 %, respectively), but without effects on microbial activity, that was lower in P. palmensis casts (26 %). Earthworm gut transit strongly influenced the soil microbial community structure, resulting in differences between casts and soils.

Conclusions

The increased nutrient mineralization (6-, 1.3- and 1.4-fold for N, C and P, respectively) in casts produced by these earthworm species is of particular importance because of the amount of casts released and the seasonal variations in earthworm activity, which may favour plant growth.  相似文献   

6.
The soil organic matter (OM) content of soils in a long-term fertiliser field trial (Winchmore, New Zealand) are similar (P > 0.05) despite >60 years application of different phosphorus (P) rates. As the net primary productivity increased with P addition, greater losses of carbon (C) occur concomitantly with increased P fertility. Several hypotheses have been proposed to explain the mechanisms, including C leaching, increased earthworm activity or elevated rates of microbial activity. In this study, we found support for both direct and secondary effects of soil P on soil C through impacts on the soil microbial community. Microbial biomass, inferred through quantification of hot water extractable C, increased with soil P status and decreased with C/P ratio (P < 0.001). However, the microbial biomass had no relationship with soil organic C content (P = 0.485). Mineralisation of C substrates added to soil also increased with soil P status (total P, R 2 = 0.84; P < 0.001). These results indicated potential conditioning of the microbial community for rapid C cycling. Utilisation of different C compounds was clustered by cophenetic similarity; a distinct group of ten carbon compounds was identified for which rates of mineralisation were strongly associated with soil P status and microbial biomass. However, this alteration of microbial community size and activity was not reflected in abundances of selected oligotrophic and copiotrophic taxa. As such, the alteration may be due to changes in the abundances of all taxa, i.e. a general community response.  相似文献   

7.
秸秆施用下接种蚯蚓对农田土壤微生物特性的影响   总被引：3，自引：0，他引：3  
在连续6年稻麦轮作系统中，研究不同秸秆施用方式下接种蚯蚓对土壤微生物生物量、活性（基础呼吸）及群落功能多样性（BIOLOG单一碳源利用指纹方法）的影响，试验设5个处理：对照（CK）、秸秆表施（M）、秸秆混施（I）、秸秆表施且接种蚯蚓（ME）、秸秆混施且接种蚯蚓（IE）。不同秸秆施用下接种蚯蚓均对土壤微生物生物量、微生物生物活性和群落碳源利用能力产生显著影响：两种秸秆施用方式下接种蚯蚓均增加微生物生物量；秸秆表施并接种蚯蚓导致微生物活性、碳源利用丰富度和多样性指数均降低，而在秸秆混施下则均升高；BIOLOG碳源利用分析结果表明在秸秆施用下接种蚯蚓后土壤的微生物群落组成发生明显变化。  相似文献   

8.
A novel experiment design based on the axial simplex design was used to study the effects of earthworm functional diversity on microbial biomass and microbial community level physiological profiles in soils. This mesocosm experiment was carried out at two densities of earthworm and at two levels of food supply. Soil mesocosms were maintained for 7 months and watered each week with 300 ml of distilled water. At the end of this period the soil columns were divided into upper and lower halves and microbial biomass carbon and functional diversity assessed. Greater microbial biomass and activity was found in the upper layer of soil. Food supply was the major driver leading to increased microbial activity and biomass. Increased earthworm biomass had the opposite effect. In the lower soil layer, the presence of anecic worms had the greatest effect on microbial biomass and activity. This effect was enhanced with increased food supply. Overall, the relationship between earthworm functional diversity and microbial community level physiological profile appeared to be idiosyncratic and the effect of the earthworms varied with soil layer, initial biomass and food supply. The loss of any earthworm functional group might lead to significant alterations in the microbial biomass, distribution and physiological profile.  相似文献   

9.
Abstract

The effects of steam sterilization (SS), methyl bromide (MeBr) fumigation and chloropicrin (CP) fumigation on soil N dynamics and microbial properties were evaluated in a pot experiment. All disinfection treatments increased the NH+ 4-N level and inhibited nitrification. The additional NH+ 4-N in the CP treatment probably originated from the decomposition of microbial debris by surviving microbes, while that in the SS treatment was attributable to deamination processes of soil organic N occurring in a less labile fraction in addition to the decomposition of microbial debris. The MeBr fumigation increased the level of NH+ 4-N without changing the soil microbial biomass. Based on the determinations of soil microbial biomass, substrate utilization activity (Biolog method) and microbial community structure (phospholipid fatty acid method), the effects of the MeBr, CP and SS treatments on the microbial community were compared. The MeBr fumigation had relatively mild and short-term effects on microbial biomass and activity, but altered the community structure drastically by promoting the growth of gram-positive bacteria. The CP fumigation had large and long-term impacts on microbial biomass and activity; the community structure remained unaffected except for the gram-negative bacteria. Steam sterilization had severe and persistent effects on all parameters. The severity of the effects decreased in the order SS ≥ CP > MeBr.  相似文献   

10.
Microbial food webs tolerate toxic compounds depending on individualistic species resistance and their ability of using alternate food sources. Soil polluted with low-molecular weight volatile organics, such as hexane, diminishes bacterial and fungal communities despite its short residence time. Survival of microbial species depends on perturbation intensity, which in turn restricts resources for amoebae survival in polluted soil. Soil functional recovery from anthropogenic perturbations depends on microbial organic matter (OM) metabolization of pollutants. However, reconfiguration of amoebae community after soil exposure remains largely unknown. A microcosms study was carried out to determine the effects of hexane on the community structure of soil amoebae as well as the importance of Medicago sativa on amoebae community recovering. Hexane had a negative impact on species richness and structure of the amoebae community 24 h after pollution. There was a significant increase in species richness and number of amoebae 30 days after contamination. These two parameters further increased after 60 days from contamination. After 30 days of the initial trophozoites extinction caused by Hexane, M. sativa’s. Root zone showed a significant increase of both species richness and number of individuals. This recovery trend was kept after 60 days when the highest values in species richness and abundance of individuals were shown in both polluted and non-polluted microcosms. In conclusion, M. sativa’s root zone speeds up recovery of the amoebae community structure after pollution exposure.  相似文献   

11.
《Pedobiologia》2014,57(3):139-145
Anthropogenic nitrogen (N) deposition is a serious threat to biodiversity and the functioning of many ecosystems, particularly so in N-limited systems, such as many forests. Here we evaluate the associations between soil nitrate and changes in plant community structure and soil biota along nitrate gradients from croplands into closed forests. Specifically, we studied the composition of the understory plant and earthworm communities as well as soil microbial properties in two deciduous forests (Echinger Lohe (EL) and Wippenhauser Forst (WF)) near Munich, Germany, which directly border on fertilized agricultural fields. Environmental variables, like photosynthetically active radiation, distance to the edge and soil pH were also determined and used as co-variates. In both forests we found a decrease in understory plant coverage with increasing soil nitrate concentrations. Moreover, earthworm biomass increased with soil nitrate concentration, but this increase was more pronounced in EL than in WF. Soil microbial growth after addition of a nitrogen source increased significantly with soil nitrate concentrations in WF, indicating changes in the composition of the soil microbial community, although there was no significant effect in EL. In addition, we found changes in earthworm community composition along the soil nitrate gradient in WF. Taken together, the composition and functioning of forest soil communities and understory plant cover changed significantly along soil nitrate gradients leading away from fertilized agricultural fields. Inconsistent patterns between the two forests however suggest that predicting the consequences of N deposition may be complicated due to context-dependent responses of soil organisms.  相似文献   

12.
ABSTRACT

The effects of straw retention on soil bacterial community structure, microbial function, and biochemical properties were assessed. Terminal restriction fragment length polymorphism (T-RFLP) and community-level physiological profile (CLPP) assays were used to assess the bacteria community structure and microbial function respectively. Treatments included straw removal with conventional tillage (CT), straw retention with conventional tillage (SRCT) and straw retention with no tillage (SRNT). SRCT and SRNT significantly (p < 0.05) increased soil organic carbon by 8.9% and 9.7%, and microbial biomass carbon by 44.7% and 330.8%, respectively, compared with CT. T-RFLP analysis indicated that straw retention had no favourable effect on soil bacterial diversity, and SRCT significantly (p < 0.05) decreased bacterial diversity compared to CT. Among the three treatments, SRNT had the highest activity of urease, invertase, cellulase, and β-glucosidase. SRCT significantly (p < 0.05) increased the activity of invertase and β-glucosidase compared to CT treatment. CLPP analysis showed that microbial functional diversity was significantly (p < 0.05) increased by straw retention. Enzyme activity and microbial functional diversity were not correlated with bacterial diversity. Therefore, according to this study, SRNT is a better farming practice because it improves soil fertility and biological quality.  相似文献   

13.

Purpose

Soil microbes play important roles in plant nutrition and soil conservation, and the diversity and population of soil microbe are influenced by abiotic and biotic factors associated with different soil managements. However, the information concerning soil microbe diversity and population structure and its relation with soil fertility and enzyme activities are scarce in crop rotation under different soil management system.

Materials and methods

This paper reports the effects of three weeding managements (herbicide (2-chloro-N-(ethoxymethyl)-N-(2-ethyl-6-methylphenyl) acetomide, C14H20ClNO2), manual weeding, and no weeding (CK)), on soil microbial diversity, population structure, and its relationship with soil active organic matter (AOM) and pH, and the activity of soil enzymes like sucrase, catalase, and urease activities from long-term test area in red soil upland field in southeast China, which was set up since 2006. Soil samples at 0–20-cm depths were collected before (8 years) and after (8 + 1 years) weeding management in April 2014.

Results and discussion

Soil enzymes (sucrase, catalase, and urease activity) and soil microbial populations had no significant difference (P > 0.05) under the three weeding treatments. Based on richness of microbial population up to 0.10%, the phyla Proteobacteria and Actinobacteria highly dominated the three soil treatments, averagely accounting for 21.76 and 21.44%. Chloroflexi was the next phylum, about accounting for 6.84%. Firmicutes, Verrucomicrobia, and Planctomycetes phylum accounted for 4.98, 4.78, and 4.23%, respectively. The percentage of Gemmatimonadetes was 2.76%, and that of Bacteroidetes was about 1.45%. Armatimonade and Nitrospira were the lowest, with 0.69 and 0.26%, respectively. Among the 20 phyla, only 5 had significant correlation with some of the soil properties. Twenty-one in 46 classes had significant correlation with some of the soil properties. Armatimonadetes and Fusobacteria had positive correlation with moisture. Acidobacteria_Gp3, Deltaproteobacteria, Chthonomonadetes, Armatimonadetes_gp4, and Euryarchaeota also were positively correlated with moisture. Negative correlation between Armatimonadetes, Chloroflexi, Chthonomonadetes, and Armatimonadetes_gp5 and AOM exists, and Armatimonadetes, Chthonomonadetes, Clostridia, Armatimonadetes, and pH were negatively correlated. Fusobacteria was positively correlated with catalase. Acidobacteria_Gp10 and Armatimonadia were positively correlated with catalase. Chthonomonadetes, Clostridia, and Armatimonadetes_gp5 were correlated with urease. Gammaproteobacteria and Flavobacteria were correlated with sucrase.

Conclusions

For long-term herbicide experiment conducted on the Dongxiang upland site, no significant effect of herbicide on soil microbial community composition and enzyme activities was found. Further work is needed to relate microbial community structure and function in different herbicide systems or season sampling, even to detect herbicide effect on community structure during the growing season.
  相似文献   

14.
Several biochemical and molecular methods are used to investigate the microbial diversity and changes in microbial community structure in rhizospheres and bulk soils resulting from changes in management. We have compared the effects of plants on the microbial community, using several methods, in three different types of soils. Pots containing soil from three contrasting sites were planted with Lolium perenne (rye grass). Physiological (Biolog), biochemical (PLFA) and molecular (DGGE and TRFLP) fingerprinting methods were employed to study the change in soil microbial communities caused by the growth of rye grass. Different methods of DNA extraction and nested PCR on TRFLP profiles were examined to investigate whether they gave different views of community structure. Molecular methods were used for both fungal and bacterial diversity. Principal component analysis of Biolog data suggested a significant effect of the plants on the microbial community structure. We found significant effects of both soil type and plants on microbial communities in PLFA data. Data from TRFLP of soil bacterial communities showed large effects of soil type and smaller but significant effects of plants. Effects of plant growth on soil fungal communities were measured by TRFLP and DGGE. Multiple Procrustes analysis suggested that both methods gave similar results, with only soil types having a significant effect on fungal communities. However, TRFLP was more discriminatory as it generated more ribotype fragments for each sample than the number of bands detected by DGGE. Neither methods of DNA extraction nor the nested PCR had any effect on the evaluation of soil microbial community structure. In conclusion, the different methods of microbial fingerprinting gave qualitatively similar results when samples were processed consistently and compatible statistical methods used. However, the molecular methods were more discriminatory than the physiological and biochemical approaches. We believe results obtained from this experiment will have a major impact on soil microbial ecology in general and rhizosphere–microbial interaction studies in particular, as we showed that the different fingerprinting methods for microbial communities gave qualitatively similar results.  相似文献   

15.
The effects on two earthworm species of a gradient of metal contamination in soil collected close to a 50-year-old lead recycling factory were investigated in mesocosms filled with soil sampled at three distances from the factory (10, 30 and 60 m). After 5 weeks of exposure, earthworm litter consumption and weight change were measured. Burrow systems were analysed using X-ray tomography, and water infiltration was measured. No significant differences in earthworm weight or activity were observed between mesocosms filled with soil from 30 and 60 m. In contrast, both earthworm species significantly lost weight and burrowed less in the soil sampled at 10 m. In the cores filled with the soil collected at 10-m distance, Aporrectodea caliginosa avoided the highly contaminated first layer (0–5 cm) and burrowed deeper whereas Lumbricus terrestris burrowed relatively more in this layer. We assume that these different reactions are associated with their ecological types. Epi-anecic earthworms forage litter at the soil surface, whereas endogeic earthworms are geophagous and thus are able to forage deeper. This was further corroborated by the bioaccumulation factors measured for each species: for L. terrestris, BAF values for Pb and Cd only decreased slightly in the 10-m soil correlating with their overall reduced activity. However, BAF values for A. caliginosa were 20-fold lower compared to those observed in soil from 30 and 60 m. These modifications in burrowing behaviour in the 10-m mesocosms resulted in a significant and marked decrease in water infiltration rates but only for L. terrestris.  相似文献   

16.
Re-vegetation of eroded soil restores organic carbon concentrations and improves the physical stability of the soil, which may then extend the range of microhabitats and influence soil microbial activity and functional stability through its effects on soil bacterial community structure. The objectives of this study were (i) to evaluate the restorative effect of re-vegetation on soil physical stability, microbial activity and bacterial community structure; (ii) to examine the effects of soil physical microhabitats on bacterial community structure and diversity and on soil microbial functional stability. Soil samples were collected from an 18-year-old eroded bare soil restored with either Cinnamomum camphora (“Eroded Cc”) or Lespedeza bicolour (“Eroded Lb”). An uneroded soil planted with Pinus massoniana (“Uneroded Pm”) and an eroded bare soil served as references. The effect of microhabitats was assessed by physical destruction with a wet shaking treatment. Soil bacterial community structure and diversity were measured using a terminal restriction fragment length polymorphism (T-RFLP) approach, while soil microbiological stability (resistance and resilience) was determined by measuring short-term (28 days) decomposition rate of added barley (Hordeum vulgare) powder following copper and heat perturbations. The results demonstrated that re-vegetation treatment affected the recovery of physical and biological stability, microbial decomposition and the bacterial community structure. Although the restored soils overshot the Uneroded Pm sample in physical stability, they had lower microbial decomposition and less resilience to copper and heat perturbations than the Uneroded Pm samples. Soil physical destruction by shaking had the same effect on soil physical stability, but different effects on soil microbial functional stability. There were significant effects of vegetation treatment and perturbation type, and interactive effects among vegetation treatment, shaking and perturbation type on bacterial community structure. The destruction of aggregate structure increased resilience of the Eroded Lb sample and also altered its bacterial community structure. Both copper and heat perturbations resulted in significantly different community structure from the unperturbed controls, with a larger effect of copper than heat perturbation. Bacterial diversity (Shannon index) increased following the perturbations, with a more profound effect in the Uneroded Pm sample than in the restored soils. The interactive effects of vegetation treatment and shaking on microbial community and stability suggest that soil aggregation may contribute to the generation of bacterial community structure and mediation of biological stability via the protection afforded by soil organic carbon. Differential effects of re-vegetation treatment suggest that the long-term effects are mediated through changes in the quality and quantity of C inputs to soil.  相似文献   

17.
In this study, we analysed the impact of heavy metals and plant rhizodeposition on the structure of indigenous microbial communities in rhizosphere and bulk soil that had been exposed to heavy metals for more than 150 years. Samples of the rhizosphere of Silene vulgaris and non-rhizosphere soils 250 and 450 m from the source of emission that had different metal concentrations were collected for analyses. The results showed that soils were collected 250 m from the smelter had a higher number of Cd-resistant CFU compared with the samples that were collected from 450 m, but no significant differences were observed in the number of total and oligotrophic CFU or the equivalent cell numbers between rhizosphere and non-rhizosphere soils that were taken 250 and 450 m from the emitter. Unweighted pair group method with arithmetic mean (UPGMA) cluster analysis of the denaturing gradient gel electrophoresis (DGGE) profiles, as well as a cluster analysis that was generated on the phospholipid fatty acid (PLFA) profiles, showed that the bacterial community structure of rhizosphere soils depended more on the plant than on the distance and metal concentrations. The sequencing of the 16S rDNA fragments that were excised from the DGGE gel revealed representatives of the phyla Bacteroidetes, Acidobacteria, Gemmatimonadetes, Actinobacteria and Betaproteobacteria in the analysed soil with a predominance of the first three groups. The obtained results demonstrated that the presence of S. vulgaris did not affect the number of CFUs, except for those of Cd-resistant bacteria. However, the presence of S. vulgaris altered the soil bacterial community structure, regardless of the sampling site, which supported the thesis that plants have a higher impact on soil microbial community than metal contamination.  相似文献   

18.
This study aimed at quantifying the consequences of reduced precipitation and plant diversity on soil microbial community functioning in a Mediterranean shrubland of southern France. Across a natural gradient of shrub species diversity, we established a total of 92 plots (4 × 4 m) with and without a moderate rain exclusion treatment of about 12 % of total precipitation. Shrub diversity included all possible combinations of the four dominant species (Cistus albidus, Quercus coccifera, Rosmarinus officinalis, and Ulex parviflorus). Respective leaf litter mixtures of these species combinations were exposed in all plots over 2 years. We quantified how litter species richness and the reduction in precipitation affected the soil microbial substrate utilization (measured by CO2 evolution using the MicroResp method) on soil samples collected underneath each individual litter mixture after 1 and 2 years of decomposition. Moderate precipitation reduction had a minor impact, but litter species richness and the dissimilarity in phenolic concentrations (estimated using Rao’s quadratic entropy) showed a positive effect on the diversity of substrates metabolized by the microbial communities. Moreover, litter species richness increased soil microbial activity by increasing the catabolic diversity of the soil microbial community. These effects were mostly driven by the presence of Quercus and Ulex leaf litter, which at the same time reduced microbial metabolic dominance, while the presence of Rosmarinus had opposite effects. Our data suggest that plant species loss can have stronger effects on the functioning of soil microbial communities than moderate drought, with potentially important feedbacks on biogeochemical cycling in Mediterranean shrubland ecosystems.  相似文献   

19.
《Applied soil ecology》2007,35(1):226-236
The gut of many soil arthropods contains a complex and mutualistic microbial community that usually assists the host with digestion. The same is probably true for earthworms, but the nature and function of the microbiota inhabiting their gut are virtually unknown. In this paper, we studied the microbial community in the gut content of the earthworm Lumbricus terrestris L. and in the bulk soil by assessing their fatty acid (FA) profiles. Our results indicated that the total FA concentration in the earthworm gut was about two orders of magnitude greater than in bulk soil, with higher concentration of bacteria (up to 500-fold), fungal and metazoan-derived FAs. Several FAs appearing in the gut were not present in bulk soil. PCA analysis revealed that the microbial community in the gut was different from that in the bulk soil, and that significant changes occurred between midgut, hindgut and proctodeum. Cluster analysis of bacterial and fungal-derived FA profiles grouped the bulk soil samples apart from the gut samples, where the hindgut profiles were more closely related to those from the proctodeum than those from the midgut. We showed important changes in the FA concentration and composition occurring at very small spatial scales inside the gut of the earthworm L. terrestris. These results have implications for understanding earthworm digestion, and they suggest that the microbial community in the earthworm gut is not a casual combination of microorganisms already present in the soil. Further study is needed to determine how these gut microbial communities are involved in earthworm digestion processes.  相似文献   

20.

Purpose

Changes of nitrogen (N) cycle caused by N fertilization and precipitation regimes have affected the key ecosystem structure and functions in temperate steppe, which may modify the structure of soil microbial communities involved in N transformation. This paper was designated to examine the response of soil ammonia oxidizers and denitrifiers to the N fertilization and precipitation regimes in a semi-arid steppe where N and water contents are major limiting factors of the grassland productivity.

Materials and methods

This study was based on a long-term N fertilization and precipitation regimes experiment in Inner Mongolia (116° 17′ 20″ E, 42° 2′ 29″ N). The treatments including CK (control), R (reduced precipitation), W (30% increase in precipitation), N (10 g N m?2 y?1), RN (reduced precipitation and 10 g N m?2 y?1), and WN (30% increase in precipitation and 10 g N m?2 y?1). Soil basic chemical properties and microbial activities were analyzed. Molecular methods were applied to determine the abundance, structure and diversity of ammonia oxidizers and denitrifiers. Statistical analysis detected the main and interactive effect of treatments on soil microbial communities and revealed the relationship between soil microbial community structures and environmental factors.

Results and discussion

N fertilization significantly increased ammonia-oxidizing bacteria (AOB) abundance. Ammonia-oxidizing archaea (AOA) community structure was markedly changed in N fertilizer treatment and strongly affected by soil pH, while soil nitrate and water content correlated with AOB community structure. Soil nitrate was the key factor influencing nirK gene community structure, while soil pH and water content explained much of the variations of nosZ gene community. AOB-amoA and nosZ gene community diversities were influenced by precipitation regimes and interaction of N fertilization and precipitation regimes, respectively.

Conclusions

N fertilization and precipitation regimes had significant influences on the changes of soil properties and microbial functional communities. Soil nitrification was mainly driven by AOB in the semi-arid grassland. Changes of substrate content and soil pH were the key factors in shifting functional microbial communities. The non-synergistic effects of N fertilization and precipitation regimes on the microbial functional groups indicated that the negative effect of lower pH induced by N fertilization would be alleviated by precipitation regimes, which should be well considered in grassland restoration.
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