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1.
Samuel Duodu 《Soil biology & biochemistry》2006,38(5):1162-1165
We compared trapping of Rhizobiumleguminosarum biovar trifolii isolates under field soil and non-soil environmental conditions. Isolates were obtained from white clover (Trifoliumrepens L.) and red clover (T. pratense L.) grown directly in the field and from plants inoculated with soil from the same site using a plant infection technique. Isolates were identified by genomic polymerase chain reaction (PCR) fingerprinting using primers derived from the enterobacterial repetitive intergenic consensus (ERIC) sequences. The isolates trapped from soil dilutions in the laboratory included a number of major ERIC types that were not found in the field trapped nodules, suggesting that sampling of clover Rhizobium strains from soil dilutions may not be representative of the field nodulating population. 相似文献
2.
Roberto Rasero Dominga Soglia Paola Sacchi Stefano Sartore Verónica Spalenza 《Biological conservation》2010,143(5):1269-266
Ten markers specific to Sarcoptes mites were used in applying microsatellite genotyping to individual Sarcoptes mites collected in three European countries from 15 wild mammal populations belonging to 10 host species. The results showed that geographical separation had real biological significance for the definition of mite sub-populations, and that the degree of genetic exchange occurring between mites from different localities was apparently related to the geographical distance between locations. Wild host-derived mite populations were found to be clustered into three main groups: herbivore-, carnivore- and omnivore-derived Sarcoptes populations, with the omnivore-derived group located halfway between the herbivore- and carnivore-derived Sarcoptes populations. The separation between these three mite groups was better supported than the geographical separations; nevertheless, a kind of sub-clustering was detected within each of these three groups that separates mite populations into their geographical localities (countries). The lack of gene flow between Sarcoptes populations may have improved parasitic adaptations and led to what we refer to as a host-taxon-derived (carnivore host-, herbivore host- and omnivore host-derived) Sarcoptes mite found on European wild animals. Our results demonstrate that Sarcoptes is not a single panmictic population, even within each geographical location. This finding will have important ramifications for the study of the genetic structure of populations, life cycles, diagnosis and the monitoring protocols of the ubiquitous Sarcoptes mite, and could thus contribute to a better understanding of its associated epidemiology, which is of pivotal interest for wildlife biological conservation. 相似文献
3.
Margaret E. Montgomery Lynn M. Woodworth David A. Briscoe 《Biological conservation》2010,143(8):1842-1849
Many threatened species are being maintained in captivity to save them from extinction, often with the eventual aim of reintroduction. The objective of genetic management in captivity is to ‘freeze’ evolution i.e. to avoid genetic adaptation to captivity and to retain genetic diversity. Most current genetic management of threatened species addresses the latter, but does not explicitly address the former. The theory underlying current genetic management and its practical implementation assumes neutrality of loci. However, genetic adaptation in captive populations may cause non-neutral behavior at neutral loci due to selective sweeps (hitchhiking) caused by rapid allele frequency changes at linked fitness loci. We compared changes in microsatellite genetic diversity at eight non-coding loci with neutral predictions in 23 pedigreed captive populations of Drosophila melanogaster maintained with effective sizes of 25 (eight replicates), 50 (6), 100 (4), 250 (3) and 500 (2) for 48 generations. Loss of microsatellite heterozygosity was significantly faster (by 12%) than predicted by neutral theory, as assessed by regressing proportion of heterozygosity retained on pedigree inbreeding coefficients. Further, greater than neutral changes were observed for both variances in allele frequencies across replicates (by 25%), and for temporal changes in allele frequencies (by 33%). All eight microsatellite loci showed signals of selectively-driven changes. Rather than having their evolution ‘frozen’, captive populations are undergoing major genome-wide selective sweeps that affect not only fitness loci but linked neutral loci. Captive genetic management for threatened species destined for reintroduction requires modification to explicitly minimize genetic adaptation to captivity. 相似文献
4.
Twenty-eight Rhizobium strains were isolated from the root nodules of faba bean (Vicia faba L.) collected from 11 governorates in Egypt. A majority of these strains (57%) were identified as Rhizobium leguminosarum bv. viciae (Rlv) based on analysis of a nodC gene fragment amplified using specific primers for these faba bean symbionts. The strains were characterized using a polyphasic approach, including nodulation pattern, tolerance to environmental stresses, and genetic diversity based on amplified ribosomal DNA-restriction analysis (ARDRA) of both 16S and 23S rDNA. Analysis of tolerance to environmental stresses revealed that some of these strains can survive in the presence of 1% NaCl and a majority of them survived well at 37 °C. ARDRA indicated that the strains could be divided into six 16S rDNA genotypes and five 23S rDNA genotypes. Sequence analysis of 16S rDNA indicated that 57% were Rlv, two strains were Rhizobium etli, one strain was taxonomically related to Rhizobium rubi, and a group of strains were most closely related to Sinorhizobium meliloti. Results of these studies indicate that genetically diverse rhizobial strains are capable of forming N2-fixing symbiotic associations with faba bean and PCR done using nodC primers allows for the rapid identification of V. faba symbionts. 相似文献
5.
The extent of damage to the host plant caused by Gaeumannomyces graminis var. tritici (Ggt) and var. graminis (Ggg) is a result of a net effect of host susceptibility and mycelium infectivity. The disease severity on cereal roots caused by G. graminis (Gg) fungi varies considerably depending on the genetic subtypes. Results of our rhizobox placement experiments additionally showed a subtype-specific effect of the spatial distance between host and fungus on the infection. The highest pathogenicity of each subtype was found in different zones of the root system: pathozones of different subtypes alternated along the root. The extent of the pathozone profiles did not depend on the infectivity of the inoculum and plant age. However, disease severity was shown to be affected by defence reactions of the host plant. An attack of a fungal subtype that is easily recognized by the host plant leads to defence reactions like increased root growth, thus minimizing the damage to the shoot. Detailed analysis showed that a Ggt subtype had a high potential for colonizing root laterals. It formed concentric zones of high colonization efficiency at a distance of ca. 5 cm around the shoot. 相似文献
6.
Species specific levels of genetic diversity are necessary for the viability of populations. Erebia epiphron (Lepidoptera: Satyrinae) is a relic species in the Sudetan Mountains, Czech Republic. These populations represent a suitable study object to test the population genetic effects of large, small and introduced populations by means of allozyme electrophoresis. A large continuous and viable population (>100,000 individuals) shows a significantly higher genetic diversity than a small isolated and declining population (ca. 5000 individuals), which most probably was founded during the Little Ice Age in the 17th and 18th centuries and became isolated afterwards. In 1932 and 1933, 50 females were transferred from the large population to the Krkonose Mountains, where they established a viable and quickly expanding population. The number of transferred individuals was sufficient to transfer most of the allozyme diversity of the large natural population. Due to the higher elevation of the Krkonose in comparison to the native range, this allocation might safeguard the survival of the Czech race of E. epiphron even under conditions of global warming. 相似文献
7.
Beáta Újvári Thomas Madsen Tatiana KotenkoMats Olsson Richard ShineHåkan Wittzell 《Biological conservation》2002,105(1):127-130
Meadow vipers (Vipera ursinii) are small venomous snakes whose range in Hungary has been greatly fragmented by anthropogenic habitat disturbance (especially, agriculture). We obtained DNA from a total of eight Hungarian snakes. Genetic variability at the major histocompatibility (Mhc) class I loci was much lower for these snakes than for specimens from two large Ukrainian populations. Within two Hungarian populations for which we had multiple individuals, band-sharing indices were 100 and 84.6% (versus 63.3 and 57% for the Ukraine populations). The Ukrainian snakes also displayed more RFLP fragments than the Hungarian vipers (mean 13.7 versus 9.0, respectively). In combination with reports of birth deformities, chromosomal abnormalities and low juvenile survival, these data strongly suggest that the Hungarian vipers are experiencing inbreeding depression. Genetic diversity is still present in the Hungarian vipers but among rather than within populations. Given the very low numbers of animals, the only feasible strategy to increase the genetic diversity and to save the Hungarian vipers from extinction is to implement a captive breeding program based on genetically screened animals. 相似文献
8.
9.
Reservoirs have the potential to block the gene flow of stream macroinvertebrates along a channel, which takes place via larval drift and adult flight, resulting in genetic differentiation above and below the reservoirs. Gene flow across the reservoirs may be strongly obstructed if the area of standing water is larger. Using random amplified polymorphic DNA markers, we investigated the genetic structure of Stenopsyche marmorata (Stenopsychidae: Trichoptera) populations found above and below the reservoirs, and the reference stream of six reservoirs with small to large water surface area ranging from 0.12 km2 to 6.00 km2. As a result, the two largest reservoirs with a standing water area larger than 3.27 km2 showed significant differences in pairwise θ between fragmented and reference streams, whereas the other four reservoirs with a standing water area smaller than 1.64 km2 showed insignificant differences. The genetic differentiations in the two largest reservoirs did not result in the reduction of genetic diversities in the fragments. Based on the significant correlation between relative population size and mean expected heterozygosity, we concluded that local genetic diversities were constrained in smaller populations due to the effect of genetic drift. 相似文献
10.
We studied the genetic diversity, gene flow and population structure among 18 populations of the clonal bryophyte Trichocolea tomentella located in Finland, Lithuania, the UK and Canada using DNA fingerprinting methods. T. tomentella is a habitat-limited, unisexual hepatic, which occupies spring and mesic habitats in woodland. The relatively small populations are increasingly fragmented with a high risk for extinction for extrinsic reasons. The presence of relatively high levels of genetic diversity regardless of population size highlights the role of even small remnant populations as important sources of genetic diversity in T. tomentella. The long-term accumulation of genotypes and somatic mutations may explain the observed levels of diversity. Gene flow among populations seems to be infrequent indicating dispersal limitation also on the relatively small spatial scale. Colonization within populations is not affected by isolation by distance suggesting the occurrence of random short-range dispersal of detached vegetative fragments. The population structure study confirmed the low mortality rates of shoots indicating a long life span of the clones in favourable conditions. Efficient ramet production by branching is likely to operate against interspecific competition. To conclude, T. tomentella appears to persist well in undisturbed habitats due to clonal regeneration, although restricted dispersal capacity is likely to prevent successful (re-)colonization in the potential habitat patches of recovering forest landscapes. The implications of the results for conservation are introduced. 相似文献
11.
The aim of this study was to examine genetic variation in desiccation tolerance in cocoons of the parthenogenetically reproducing earthworm Dendrobaena octaedra by comparing populations originating from different geographic regions (Denmark, Norway and Finland), representing large differences in precipitation and temperature. In one experiment, the tolerance of the three populations to increasing desiccation stress in the range from 100 to 91.6% relative humidity (RH) was examined, aiming to represent ecologically relevant RH values. In a second experiment, the effect of cocoon size on desiccation tolerance was investigated at 92.3% RH in the same three populations. There were highly significant differences in desiccation tolerance between populations, indicating a high genetic differentiation of this trait in D. octaedra. Cocoons from Denmark were much more sensitive (71±14% mortality at 91.6% RH) than cocoons from Norway (21±4% mortality) and Finland (4±5% mortality). Cocoons of worms from Finland and Norway were significantly larger than cocoons produced by worms from Denmark suggesting that cocoons from Denmark lost water at a higher rate when subjected to low humidity. Assuming that slow dehydration is necessary for physiologically based protection mechanisms it may be expected that desiccation tolerance is positively correlated with cocoon size. However, within each of the populations cocoon fresh weight did not have any significant impact on desiccation tolerance. When all populations were pooled there was a significant positive effect of cocoon fresh weight on desiccation tolerance, explaining about 20% of the total variation (linear regression). It seems therefore that genetic variation of desiccation tolerance in D. octaedra cocoons is related to variation in both cocoon size and other, physiologically based tolerance mechanisms. 相似文献
12.
J Mattner G Zawko M RossettoS.L Krauss K.W DixonK Sivasithamparam 《Biological conservation》2002,107(1):37-45
Hemigenia exilis (Lamiaceae) is a rare plant endemic to serpentine soils of the Goldfields of Western Australia. The species was presumed extinct until 1995, when it was re-discovered on a nickel ore deposit. To delineate the origin and extent of seed collection for rehabilitation after mining, and to identify the impact of removing one population due to mining, we assessed level and partitioning of genetic variation and differentiation. Twelve populations were sampled for DNA fingerprinting using the random amplified polymorphic DNA (RAPD) technique. Ten primers produced 89 bands, 97% being polymorphic. Genetic diversity within populations ranged from 0.197 to 0.409, averaging 0.38 at the species level, which is high compared with most other endemic species. Heterozygosity within populations ranged from 0.355 to 0.431, averaging 0.27 over the species. AMOVA partitioned over 80% of the total variation within populations. Multidimensional scaling revealed weak but significant differentiation into a northern and southern provenance. Despite selective sampling, the genetic data provided useful information for the management of Hemigenia exilis. For restoration, seed should be collected from a range of habitats of several populations, while keeping the two provenances separate. This strategy is likely to maintain high genetic diversity and locally adapted populations. 相似文献
13.
We examined the effect of selective logging on the genetic diversity of Scaphium macropodum using RAPD markers via two approaches: (1) to investigate the immediate effect by studying a same population before and after logging, and (2) to determine the long term effect by comparing two regenerated stands with an adjacent unlogged stand, assuming that they were genetically identical before logging. Results showed no negative immediate impact for the first approach, probably due to the high abundance and heterogeneity of S. macropodum in the compartment investigated. However, for the latter approach, substantial genetic erosion (i.e. 31.5% reduction for Shannon diversity, H) was detected in one of the regenerated stands corresponding to its extremely low tree density for S. macropodum. This implies the possible occurrence of genetic drift and increased inbreeding due to population decline as a result of logging. However, the observed genetic differences among the three sub-populations having prevailed before logging cannot be totally discounted in the second approach. This study also demonstrates the use of tree density as a good surrogate measure of genetic diversity. The present harvesting system in Malaysia based on a general cutting limit need to be refined; the basis for determining cutting limit in a forest management unit should consider abundance of commercial species. 相似文献
14.
Jennifer L. Neuwald 《Biological conservation》2010,143(9):2028-2038
The ability of a taxon to maintain adaptive flexibility in a stochastic environment is a function of the genetic diversity within the population. In small, fragmented populations, genetic variation can become depleted more quickly than in larger, more contiguous populations. Characterizing the patterns of genetic variation and differentiation associated with these processes is an important step in establishing conservation priorities. The Amargosa vole, Microtus californicus scirpensis, is an endangered rodent persisting in the small, fragmented marsh complex surrounding the Amargosa River near Death Valley, California. This naturally patchy system has existed since the end of the Pleistocene (approximately 10,000 y.b.p.), however, fragmentation has been exacerbated by recent anthropogenic changes. For this study, I used five nuclear microsatellite loci and the cytochrome-b region of the mitochondrial genome to quantify levels of genetic variation, population substructure, and patterns of gene flow in M.c. scirpensis. These data were compared to a broadly distributed subspecies, Microtus californicus sanctidiegi. Overall levels of nuclear genetic variation were significantly lower in M.c. scirpensis, whether measured in terms of diversity or heterozygosity, compared to more broadly distributed conspecifics. Moreover, only two haplotypes were recovered from the mitochondrial data with over 90% of the observed haplotypes being identical. Despite low genetic diversity, significant genetic subdivision among M.c. scirpensis populations was detected using both pairwise FST and Bayesian clustering methods. Furthermore, isolation by distance analyses reveal that an important landscape feature, ephemeral tributaries, is critical for dispersal among population clusters. Recommendations for conservation management are presented. 相似文献
15.
Mo Fatemi 《Biological conservation》2009,142(7):1461-1468
Wind-facilitated migration of new genotypes into small, geographically disjunct populations should buffer them against local extinction. Bertya ingramii, a monoecious, wind-pollinated shrub, is restricted to three populations in a 4 km2 area in eastern Australia. Populations are separated by deeply dissected gorges where it is unlikely that seeds are exchanged but where wind movement may facilitate pollen dispersal. Using 156 highly polymorphic ISSR markers, we found moderate genetic variation within and among populations of B. ingramii and less genetic diversity in a nearby and small population of the widespread Bertya rosmarinifolia. The smallest population of B. ingramii (<30 plants) had the highest genetic variation (65% polymorphic markers, Shannon Information Index = 0.30). AMOVA and a Bayesian analysis showed that molecular variance was equally distributed within and among populations suggesting that gene flow is as limited within as in among populations. Genetic distances between populations were only weakly explained by their relative geographic distances (mantel test, R2 = 0.21, P = 0.001) but the distribution of private bands, the departure from Hardy-Weinberg equilibrium, and a UPGMA tree showed that the smallest population of B. ingramii was generally more similar to an upstream population of B. rosmarinifolia. Thirty-eight percent of bands in this small population of B. ingramii were exclusively shared with B. rosmarinifolia. This covert hybridisation may have been an ancient event but may be responsible for contemporary declines in germination and establishment in B. ingramii. The conservation implications are amplified by the endangered status of B. ingramii. 相似文献
16.
Martin Holmstrup Johannes Overgaard Cino Pertoldi 《Soil biology & biochemistry》2007,39(10):2640-2650
Geographic variation in freeze tolerance, glycogen storage and freeze-induced glucose mobilisation was investigated in the earthworm Dendrobaena octaedra. Specimens from 15 populations collected in Canada, Greenland and Europe were reared in the laboratory in a common-garden experiment to test whether glucose and glycogen concentrations correlated with genetic variation in freeze tolerance among the populations. Populations from Canada, Sweden, Poland and Finland did not differ much in their freeze tolerance and were able to tolerate freezing for 18 d down to at least −14 °C (lowest temperature tested). Specimens collected in a relatively warm climate (Denmark) were the least freeze tolerant, and also had the lowest concentrations of glucose when frozen at −2 °C. However, there was no clear evidence that glucose concentration is a determinant in the degree of freeze tolerance of D. octaedra when considering the whole assemblage of populations. The role of phylogenetic inertia was tested by looking for serial independence and no influence of phylogeny was detected in our findings allowing us to exclude the possibility that phylogenetic relatedness between populations is a major evolutionary factor explaining the observed differences for freeze tolerance and related traits. The size of the glycogen reserve was significantly correlated with the ability to tolerate freezing. Large glycogen reserves may be advantageous in very cold regions in order to maximise cryoprotectant production and/or as a source of energy for the anaerobic metabolism occurring during prolonged freezing. 相似文献
17.
Soil populations of Rhizobium leguminosarum bv. viciae (Rlv) that are infective and symbiotically effective on pea (Pisum sativum L.) have recently been shown to be quite widespread in agricultural soils of the eastern Canadian prairie. Here we report on studies carried out to assess the genetic diversity amongst these endemic Rlv strains and to attempt to determine if the endemic strains arose from previously used commercial rhizobial inoculants. Isolates of Rlv were collected from nodules of uninoculated pea plants from 20 sites across southern Manitoba and analyzed by plasmid profiling and PCR-RFLP of the 16S-23S rDNA internally transcribed spacer (ITS) region. Of 214 field isolates analyzed, 67 different plasmid profiles were identified, indicating a relatively high degree of variability among the isolates. Plasmid profiling of isolates from proximal nodules (near the base of the stem) and distal nodules (on lateral roots further from the root crown) from individual plants from one site suggested that the endemic strains were quite competitive relative to a commercial inoculant, occupying 78% of the proximal nodules and 96% of the distal nodules. PCR-RFLP of the 16S-23S rDNA ITS also suggested a relatively high degree of genetic variability among the field isolates. Analysis of the PCR-RFLP patterns of 15 selected isolates by UPGMA indicated two clusters of three field isolates each, with simple matching coefficients (SMCs) ≥0.95. However, to group all field isolates together, the SMC has to be reduced to 0.70. Regarding the origin of the endemic Rlv strains, there were few occurrences of the plasmid profiles of field isolates being identical to the profiles of inoculant Rlv strains commonly used in the region. Likewise, the plasmid profiles of isolates from nodules of wild Lathyrus plants located near some of the sites were all different from those of the field isolates. However, comparison of PCR-RFLP patterns suggested an influence of some inoculant strains on the chromosomal composition of some of the field isolates with SMCs of ≥0.92. Overall, plasmid profiles and PCR-RFLP patterns of the isolates from endemic Rlv populations from across southern Manitoba indicate a relatively high degree of genetic diversity among both plasmid and chromosomal components of endemic strains, but also suggest some influence of chromosomal information from previously used inoculant strains on the endemic soil strains. 相似文献
18.
Bacem Mnasri 《Soil biology & biochemistry》2007,39(7):1744-1750
Three experiments were conducted in order to investigate the effect of water deficiency on nodulation, rhizobial diversity and growth of common bean. In the first experiment, the effect of water deficiency was studied on two soil samples under glasshouse conditions. A significant decrease in nodulation and shoot dry weight production was observed. The molecular characterization of the root nodule isolates by PCR-RFLP of 16S rRNA and nodC genes showed that the nodulation by Rhizobium etli was severely inhibited. The in vitro analysis of salt tolerance indicated that drought stress favoured nodulation by salt-tolerant strains. In the second experiment, the effect of water deficiency was studied on sterilized sand using Rhizobium tropici CIAT899T and Ensifer meliloti bv. mediterranense 4H41 as inoculants. The results showed that strain 4H41, which is the more salt tolerant, was more competitive and more effective under water deficiency than strain CIAT899T. In the third experiment, the strain 4H41 was used to inoculate four fields. A significant increase in nodule number, shoot dry weight and grain yield was observed even in the non-irrigated soils. This work constitutes the first report of a strain enhancing the growth and the grain yield of common bean under water deficiency. 相似文献
19.
The genetic diversity of Aspergillus flavus populations isolated from the peanut-cropped soils in the peanut-growing region at Cordoba Province was evaluated by analysis of vegetative compatibility group (VCG). VCGs were determined through complementation assays between nitrate-nonutilizing (NNO) mutants. Fifty-six VCGs were identified from 100 isolates. Twenty-five VCGs contained two or more isolates and 31 VCGs contained only a single isolate. In general, there were significant differences among VCGs in aflatoxin and CPA production. One VCG group included a single atoxigenic strain since it was neither aflatoxin nor cyclopiazonic acid producer. This isolate could be useful as a biological control agent, since it was unable to form a stable heterokaryon in the complementation test with the other isolates. Seven A. flavus isolated from soil were atypical because they simultaneously produced aflatoxins B, G and CPA. 相似文献
20.
RAPD polymorphisms were applied to check the efficiency of ex situ genetic conservation of endangered Vatica guangxiensis X. L. Mo. endemic to southwestern China. Low level of genetic variation was revealed in three remaining natural populations. Twenty random primers, each with 10 base pairs, generated 231 bands with 53.68% being polymorphic, and with an average of 32.46% being polymorphic in each natural population. Strong population differentiation was revealed by AMOVA (analysis of molecular variance) and Gst value was 0.3764. The population ML ex situ conserved in the Xishuangbanna Tropical Botanical Garden contained an intermediate genetic variation compared with natural populations, with 30.74% bands being polymorphic. Of the total 231 bands generated in V. guangxiensis, 204 bands were also detected in population ML, indicating that 88.31% of the total genetic variations of this species were conserved in ex situ population. If only the alleles with moderate to high frequency (P>0.05) were considered, 204 out of 209 bands (97.61%) occurred in ex situ population ML. RAPD analysis also detected one exclusive band in natural population NS, and five in natural population NP, three of these exclusive bands were generated in every samples of natural population (NP), and other three had moderate to high frequencies. While none of these exclusive bands were detected in ex situ conserved population ML. Our conclusions are that the ex situ conserved population ML contains representative genetic variation to maintain long-term survival and evolutionary process of V. guangxiensis, and that more extensive ex situ sampling in natural population NS and NP is needed to conserve more exclusive alleles in ex situ population. The tropical area in the Botanical Garden would play a more important role in the ex situ conservation of rare and endangered plants. 相似文献