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1.
A Cascón J Fregeneda M Aller J Yugueros A Temprano C Hernanz M Sánchez L. Rodríguez-Aparicio G. Naharro 《Journal of fish diseases》2000,23(1):49-59
The gene ahpA from Aeromonas hydrophila AG2 encoding an extracellular serine protease, named AhpA, was cloned in pUC18 plasmid. Nucleotide sequence analysis revealed an open reading frame of 1875 bp encoding a 625 amino-acid protein with a molecular weight of 67 567 Da. The gene ahpA was efficiently expressed in Escherichia coli C600 and in the non-proteolytic A. salmonicida masoucida , which was able to overproduce the 64-kDa protease found in the culture supernatant. The N-terminal amino acid sequence of the purified protein revealed a perfect match with the deduced DNA sequence starting at AAT (Asn-25), indicating that AhpA is synthesized as a pre-enzyme with a 24-amino-acid signal peptide and a 601-amino-acid mature extracellular protease. Purified protease had an optimum pH of 7.5 and its activity was strongly inhibited by PMSF, a serine protease inhibitor. The protease hydrolysed casein and elastin. The amino acid sequence of AhpA was highly homologous to A. salmonicida serine protease AspA. Inoculation of A. hydrophila ahpA mutant into trout suggests that the major AhpA secreted protease is not essential for virulence. 相似文献
2.
鳗源嗜水气单胞菌主要外膜蛋白基因克隆及其表达 总被引：5，自引：0，他引：5
A pair of primers were designed according to the published nucleotide sequence of a putative outer membrane protein gene (omp) of Aeromonas hydrophila . With the specific primers, a target fragment about 1.1 kb was amplified from Aeromonas hydrophila ML316 via PCR .The target fragment was inserted into the linearized pGEM-T easy vector. After enzyme restriction and sequencing analysis,the nucleotide data had been further analyzed by DNAman and ClutalW software. The analysis results showed that the cloned DNA fragment had a longest open reading frame (ORF) of 1035 nt,it predicted to be encoded a 344 aa protein with the molecular weight of 36 kD. Hydrophobicity analysis suggested that the protein was highly hydrophilic, especialy at the first 24 aminoacid, this region could function as signal peptide. The homologious comparison proved the cloned gene had 96% homology to the sequence of the omp gene, and the alignment of the amino acid sequence was 98% . The recombinant plasmid was constructed with the target gene and the expressing vector pGEX-4T-1 and then was transformed into E. coli BL21（DE3）by BamH and Sal I .The fusion protein was expressed under the IPTG inducing condition,and exhibited about 62 kD in size,very close to the predicted molecular weight of GSTMOMP, furthermore,the fusion protein was specifically recognized by antiserum which raised against the major outer membrane protein of AHML316. Considering all these together, it proved that the cloned gene represented the major outer membrane protein gene of AHML316, and the expressed gene products shared identical antigenicity with the natural main outer membrane protein,and also provided technical support for developing an advanced gene engineering vaccine against Aeromonas hydrophila. 相似文献
3.
采用同源克隆和末端快速扩增（RACE）方法,得到1330bp的军曹鱼（Rachycentroncanadum）MHC-Ⅰα全长cDNA片段。该序列包括76bp的5’末端非编码区（UTR）,189bp的3’UTR及1065bp的开放阅读框（ORF）,编码354个氨基酸,预测其蛋白质分子量约40．10kDa,等电点5．70。构建MHC-Ⅰα氨基酸序列的系统进化树并进行氨基酸相似性比对,结果表明,军曹鱼和已知鱼类及人类（Homosapiens）MHC-Ⅰα氨基酸的同源性在27．9％～67．1％之间。所推测的蛋白序列具有一些重要特征,包括前导肽、α1、α2、α3区、CP／TM／CYT区和保守的半胱氨酸等。Real—timePCR检测结果显示,MHC-Ⅰα基因在各个正常军曹鱼组织中均表达,但表达量各有不同,其中较强的表达于头肾;中等程度表达于鳃、脾和肠;在心、脑和肌肉中表达较弱。 相似文献
4.
A phospholipase gene of Photobacterium damselae ssp. piscicida (ppp) was cloned from a genomic library and its nucleotide sequence was determined. The open reading frame consisted of 1218 bp encoding a protein of 405 amino acids with a predicted molecular mass of 46 kDa. The PPP had identities (53-55%) with phospholipase and haemolysin of Vibrio spp., while it showed low identities (23-26%) with glycerophospholipid cholesterol acyltransferase of Aeromonas spp. A recombinant PPP (rPPP) with a His tag at the C-terminus expressed in Escherichia coli and purified showed phospholipase activity. The rPPP also showed lecithin-dependent haemolytic activity against mammalian erythrocytes and direct haemolytic activity against fish erythrocytes. The culture supernatant of wild-type P. damselae ssp. piscicida showed phospholipase activity, while that of a PPP gene knockout mutant did not. 相似文献
5.
利用RACE技术从日本沼虾肝胰腺中克隆了cytMnSOD和mtMnSOD基因cDNA全长序列。cytMnSOD基因cDNA全长1 233 bp,开放阅读框为858 bp,编码286个氨基酸,N端含有60个氨基酸残基组成的延伸区;mtMnSOD基因cDNA全长1 113 bp,开放阅读框为654 bp,编码218个氨基酸,N端含有20个氨基酸残基组成的信号肽;cytMnSOD和mtMnSOD预测蛋白分子量及等电点分别为31.33、24.05 ku和5.62、7.12。日本沼虾cytMnSOD推导的氨基酸序列与其mtMnSOD的相似性为40%,二者均含有MnSOD的特征肽段(DVWEHAYY)、4个Mn2+结合位点和2个N-糖基化位点。Real-time PCR结果表明,cytMnSOD和mtMnSOD在日本沼虾肝胰腺、肌肉、血细胞、大颚器官、卵巢和鳃等组织均有表达,其中肝胰腺表达量最高;肝胰腺cytMnSOD和mtMnSOD基因的表达量在蜕皮间期最高,蜕皮后期和蜕皮前期较低。嗜水气单胞菌刺激后3 h,肝胰腺cytMnSOD和mtMnSOD的表达量显著增加,推测MnSOD是参与机体免疫防御反应的一种重要分子。 相似文献
6.
为了研究团头鲂(Megalobrama amblycephala)TLR2(ma TLR2)在抗嗜水气单胞菌(Aeromonas hydrophila)感染中的作用,本实验克隆了ma TLR2基因的c DNA全长。结果显示:ma TLR2基因c DNA的全长包括2923 bp,编码792个氨基酸。预测得到的ma TLR2的结构域包括一个信号肽、氨基端的亮氨酸重复基序(LRRs)、跨膜结构域(TM)和一个胞内的Toll/白介素(IL)-1受体区(TIR)。在嗜水气单胞菌感染后,团头鲂头肾中,TLR2的表达量在6 h时显著升高。TLR2下游相关的炎症细胞因子TNF-α的表达量也显著上调。结果表明ma TLR2在嗜水气单胞菌感染团头鲂后的免疫应答中起到了重要作用。 相似文献
7.
嗜水气单胞菌J-1株丝氨酸蛋白酶基因克隆与序列分析 总被引：2，自引：3，他引：2
根据已发表的气单胞菌胞外蛋白酶基因核苷酸序列，设计和合成了一对引物，以嗜水气单胞菌AhJ—1的基因组DNA为模板，通过PCR技术，扩增到约900bp的丝氨酸蛋白酶基因片段，并克隆到质粒载体pGEM—T中进行测序和分析，结果表明扩增的丝氨酸蛋白酶基因片段与已发表的嗜水气单胞菌丝氨酸蛋白酶Ahe2的同源性有87％，扩增片段编码343个氨基酸，推测的分子量为35700，计算机软件分析表明编码的氨基酸有较高的抗原性，可作为核酸疫苗的侯选基因片段。 相似文献
8.
为进一步了解鱼类MHC ⅡA基因的特点及其在免疫反应中的功能,采用同源克隆、RACE-PCR、巢式PCR等技术,从健康的尼罗罗非鱼体获得1 205 bp的MHC ⅡA基因cDNA全序列(Orni-DBA-0101,Genebank登录号:JF719813)及1 388 bp的基因组序列。序列分析发现,尼罗罗非鱼MHC ⅡA基因含4个外显子和3个内含子,开放阅读框长720 bp,编码239个氨基酸。从4尾尼罗罗非鱼中共得到8条不同的cDNA序列,分别编码不同的氨基酸序列。氨基酸序列比对后发现,序列间存在丰富的多态性,且主要集中在α-1区,多态性位点数远远高于半滑舌鳎MHC ⅡA基因。生物信息学分析表明,尼罗罗非鱼MHC ⅡA编码的蛋白质分子包含1个信号肽、2个胞外结构域、1个跨膜区和1个胞质区,存在4个保守的半胱氨酸残基以及丰富的磷酸化位点,与其他物种的相似性为23%～65%。RT-PCR结果表明,MHC ⅡA基因在脾、肾、肠、鳃、性腺、肝、心脏表达量很高,在鳔和肌肉中表达量最低。人工感染嗜水气单胞菌后,肝、脾、肾、鳃、肠5个组织中MHC ⅡA基因的mRNA水平均发生了不同程度的变化,提示MHC ⅡA分子作为一种重要的免疫因子,在清除病原的免疫反应中起着重要作用。 相似文献
9.
嗜水气单胞菌外膜蛋白基因ompTS的克隆与序列分析 总被引：11，自引：1，他引：11
根据已发表的外膜蛋白基因ompⅡ的核苷酸序列设计引物，从分离 自患红底板病的中华鳖的嗜水气单胞菌中扩增得到了ompTS基因，对ompTS 基因进行序列分析，发现其与ompⅡ基因的核苷酸序列有83.5%的同源性。ompTS基因最长的开放阅读框（ORF）为1068nt，编码由355个氨基酸组成，分子量为38.9kDa的蛋白质OmpTS，其氨基酸序列的前20个氨基酸残基可能组成信号肽。由ompTS基因的编码氨基酸序列与其它细菌外膜蛋白的氨基酸序列的比较结果，进一步证实细菌外膜蛋白氨基酸序列的N端存在高度保守区。根据序列分析结果推测，ompTS基因很可能是一个新的基因，编码38.9kDa的嗜水气单胞菌外膜蛋白OmpTS，该蛋白质在膜中极有可能形成孔道，具备与孔蛋白相似的性质。 相似文献
10.
Identification and pathogenicity to rainbow trout, Oncorhynchus mykiss (Walbaum), of some aeromonads
Twelve strains of fish pathogenic aeromonads were identified by 16S rRNA sequencing as Aeromonas bestiarum , A. hydrophila , A. hydrophila subsp. dhakensis , A. salmonicida subsp. salmonicida , A. sobria biovar sobria and A. veronii biovar sobria. Following intramuscular injection, A. hydrophila subsp. dhakensis caused dark liquefying, raised furuncle-like lesions in rainbow trout within 48 h. Extracellular products of all cultures contained gelatinase and lecithinase, and most revealed lipase. Congo red absorption and siderophore production was recorded, but not so the suicide phenomenon or slime production. Sodium dodecyl sulphate polyacrylamide gel electrophoresis profile of the outer membrane proteins (OMP) revealed 10–25 bands, of which major bands were seen in the region of 32.5–47.5 and 62–83 kDa. Marked heterogenicity of the OMP and whole cell protein (WCP) profiles within and among the species was observed. Polypeptides of 83–173 kDa were detected in the WCP profile of the cultures, but they were not expressed in OMP fractions. 相似文献
11.
利用3’和5’RACE技术从中国对虾Fenneropenaeus chinensis肝胰腺中克隆了1个血蓝蛋白基因FCHc,FCHc基因cDNA全长为2161bp。其中,开放阅读2 034bp,编码678个氨基酸,预测分子量为77.59 kDa。FCHc序列与凡纳滨对虾Litopenaeus vannamei血蓝蛋白同源性为82%,与日本囊虾Marsupenaeus japonicas同源性为85%。Real-timePCR实验结果表明,FCHc在肝胰腺中的相对表达量最高,在心脏和表皮中几乎不表达。该基因在鳗弧菌和对虾白斑综合征病毒(WSSV)感染后的对虾肝胰腺中的表达量显著增加,并具有不同的时空表达趋势,提示中国对虾FCHc基因在免疫反应中具有重要作用。 相似文献
12.
以中华鲟(Acipenser sinensis)脑垂体总RNA为模板,采用RT-PCR和RACE方法,获得中华鲟神经内分泌多肽(7B2)基因的3个重叠片段,测序后拼接得到986 bp全长基因序列,其中包括5'端非翻译区(5′-UTR)14 bp、3′端非翻译区(3-′UTR)261 bp和开放阅读框711 bp。翻译编码236个氨基酸。其中前43个氨基酸为7B2的信号肽。经BLAST比对发现中华鲟7B2蛋白的同源性与斑马鱼(Danio rerio)的相似性最高为82%。系统发育分析表明,中华鲟与斑马鱼亲缘关系最近。半定量RT-PCR分析表明:在脑中7B2 mRNA表达量最高,心脏、性腺、胰等组织中表达次之,肠、肾、皮肤等组织中少量表达,肝和鳃几乎不表达。 相似文献
13.
基质金属蛋白酶(MMPs)是一种能够降解细胞外基质的蛋白水解酶类。为研究MMPs在仿刺参免疫防御中的作用,本实验采用RACE技术克隆了仿刺参基质金属蛋白酶16基因(Aj-MMP-16)的cDNA全长序列,并对其序列特征和功能进行了初步分析;采用实时荧光定量PCR(qRT-PCR)方法,分别分析了Aj-MMP-16基因在仿刺参不同组织、不同"化皮"体壁组织以及病原菌刺激后体腔细胞中的表达情况。结果显示,Aj-MMP-16基因的cDNA全长为2 976 bp,包括一个342 bp的5′非编码区,一个963 bp的3′非编码区;开放阅读框(ORF)为1 671 bp,编码557个氨基酸,预测蛋白分子量为63.11 ku,等电点为4.79。Aj-MMP-16具有典型的MMPs家族蛋白结构:N-端前肽区、铰链区、催化区、C-端类血红素结合区和跨膜区。Aj-MMP-16与其他物种的MMPs具有一定的相似性,与紫色球海胆的MMP-16相似性最高。Aj-MMP-16基因mRNA在仿刺参各组织中均有表达,表达量由高到低为呼吸树、肠、体腔细胞、管足、肌肉、体壁;在"化皮病"不同阶段,AjMMP-16基因mRNA在"化皮"体壁组织中的表达量显著高于正常体壁组织;灿烂弧菌和蜡样芽孢杆菌刺激后,体腔细胞中Aj-MMP-16基因mRNA表达量显著升高。Aj-MMP-16基因可能在仿刺参内脏再生、炎症发生以及免疫应答中起着重要的作用。 相似文献
14.
Abstract. A 587 bp Pvu II restriction fragment from the 70-kDa Aeromonas salmonicida serine protease gene, containing the'active serine' site sequence of the enzyme, has been cloned into the Sma I restriction site of pUEX2 which on expression, in Escherichia coli DH5α, produced a 142-kDa hybrid protein in high yield. The hybrid consisted of a fusion between an essentially complete β-galactosidase subunit and approximately one-third of the serine protease. A further 42-kDa hybrid was constructed from the same fragment of serine protease fused to a truncated α-galactosidase subunit. Both fusion proteins were shown to possess recognizable epitopes by dot blotting against rabbit anti- A. salmonicida 70-kDa serine protease antibody. 相似文献
15.
Yan Tan Kiyoshi Osatomi Yukinori Nozaki Tadashi Ishihara Kenji Hara 《Fisheries Science》2006,72(1):185-194
ABSTRACT: We purified cathepsins B1 and B2 from the ordinary muscle of carp Cyprinus carpio . The N-terminal amino acid sequences (12 residues) of 29 kDa bands of cathepsins B1 and B2 are the same and showed high homology of 75% and 83%, respectively, with the heavy chain of rat and human cathepsins B. Based on conserved sequences of other cathepsins B and the N-terminal amino acid sequences of 29 kDa bands, we cloned carp cathepsin B cDNA. The nucleotide sequence of carp cathepsin B cDNA consists of 1470 bp including a 993 bp open reading frame, encoding a deduced protein of 330 amino acids. The deduced amino acid sequence of carp cathepsin B has similarity of 80% to rainbow trout cathepsin B and of 76–78% to other vertebrate cathepsins B. The sequence of its isoform was also determined during molecular cloning, which has 94.8% similarity with first cloned cathepsin B. They are completely same in N-terminal amino acid sequence of heavy chain, active site and potential N-glycosylation site. This indicates there are at least two kinds of cathepsin B functioning in vivo in carp. 相似文献
16.
草鱼胞质苹果酸脱氢酶(cMDH)的序列克隆及分析 总被引：1，自引：0，他引：1
以实验室构建的草鱼(Ctenopharyngodon idellus)肠道cDNA文库苹果酸脱氢酶(cMDH)EST序列为基础,采用末端快速扩增法(RACE),从健康雌性草鱼(Ctenopharyngodon idellus)肠道细胞RNA中获得1391 bp的草鱼肠道cMDH的cDNA序列(NCBI登录号:EU569765)。结果显示:该序列包含62 bp的5′非编码区(5′-UTR),330 bp的3′非编码区(3′-UTR),典型加尾信号AATAA位于polyA起点上游16 bp。开放阅读框ORF长999 bp,共编码333个氨基酸,预测蛋白等电点为6.67,大小为36 kDa。多序列比对显示草鱼胞质苹果酸脱氢酶具有典型的苹果酸脱氢酶功能区保守序列,该酶与斑马鱼cMDH相似度最高达到95.5%,与模式植物拟兰介的相似度为57.8%,其预测三级结构具有典型cMDH功能区。Southern杂交结果表明草鱼cMDH属于多拷贝基因家族。 相似文献
17.
锦鲤疱疹病毒囊膜蛋白ORF59的克隆、分析及其主要B细胞表位区的原核表达 总被引：5，自引：0，他引：5
从感染锦鲤疱疹病毒（Koi herpesvirus,KHV）的锦鲤（Cyprinus carpiokoi）肾脏组织中提取DNA,通过PCR扩增了KHVORF59基因。该基因全长411bp,所编码的蛋白包含136个氨基酸,分子量14.3kDa,等电点（PI）6.91,有12个潜在的O糖基化位点。此研究克隆的KHVORF59基因第130位碱基由G突变为A,使其编码的第44位氨基酸由Ala突变为Thr。采用DNAStar程序,在综合分析二级结构柔性区、蛋白的亲水性、表面可能性和抗原性指数的基础上,预测了KHVORF59蛋白主要B细胞表位,并将其区段的编码序列与KHVORF59完整编码序列分别克隆入原核表达载体pET-32a（＋）,构建重组质粒pET32a-ORF59S和pET32a-ORF59C,转入大肠杆菌Rosetta菌株,IPTG诱导表达。SDS-PAGE及WesternBlot分析显示,pET32a-ORF59S可以高效表达,表达的截短KHVORF59蛋白主要以可溶性形式存在,采用HisBindResin填料,层析纯化了该截短蛋白。 相似文献
18.
为了解c型溶菌酶基因与长丰鲫(Chang Feng Carassius auratus)的抗菌效应关系,本研究利用同源克隆方法获得长丰鲫c型溶菌酶基因cDNA全长序列。结果显示:c型溶菌酶基因全长698 bp,包括5'端非翻译区60 bp,3'端非翻译区200 bp,开放阅读框438 bp,编码145个氨基酸。长丰鲫c型溶菌酶基因在肾脏组织中表达量最大,在脾脏、肠道、心脏和脑中大量表达,在肝脏和鳃中表达量相对较低,在皮肤和肌肉中几乎不表达。长丰鲫在感染迟钝爱德华氏菌、嗜水气单胞菌和金黄色葡萄球菌后,在肝脏、肾脏、脾脏和鳃等组织中基因表达量均发生显著变化,出现不同程度的上调。感染迟钝爱德华氏菌后,在脾脏中的上调幅度最大,其次为鳃、肝脏和肾脏;感染嗜水气单胞菌后,在脾脏中上调程度最大,其次是鳃;感染金黄色葡萄球菌后,在脾脏中上调幅度最大。在肝脏和肾脏中,经金黄色葡萄球菌刺激后c型溶菌酶基因的上调幅度最高;在脾脏和鳃中,经嗜水气单胞菌感染后c型溶菌酶基因上调幅度最高。三种刺激后,c型溶菌酶基因升高幅度的不同,说明不同刺激使鱼体组织产生的应激反应能力不同。 相似文献
19.
鲤疱疹病毒Ⅱ型ORF4基因的克隆、表达与免疫学检测方法 总被引：1，自引：0，他引：1
根据鲤疱疹病毒II型(Cyprinid herpesvirus Ⅱ,Cy HV-2)ORF 4基因序列(Gen Bank:JQ815364.1)设计特异性引物,PCR扩增得到ORF 4基因编码框全长序列1 041 bp,将其克隆至原核表达载体p ET-32a(+)中,构建了重组原核表达载体p ET-32a-ORF 4。将p ET-32a-ORF 4重组载体转化大肠杆菌BL21(DE3),经IPTG诱导得到融合表达的重组蛋白,融合表达的重组蛋白主要以包涵体的形式存在,其分子质量约为57 ku,与预期大小一致。将纯化的重组蛋白免疫日本大耳兔,制备了多克隆抗体,ELISA检测抗体效价大于1∶50 000,Western blot检测显示该抗体可以特异性识别重组蛋白。间接免疫荧光检测结果表明:该多克隆抗体可与由Cy HV-2感染引起细胞病变的异育银鲫脑组织细胞(GICB)发生特异性的结合。 相似文献
20.
试验扩增、克隆了在湖北地区采集的19份克氏原螯虾(Procambarus clarkii)白斑综合征病毒(White spot syndrome virus,WSSV)阳性样品的变异区ORF14/15和ORF23/24基因,通过测序比较分析了湖北各WSSV毒株与Gen Bank公布的标准毒株间在变异区ORF14/15及ORF23/24基因的差异性。结果显示,19份WSSV阳性样品中有部分样品在变异区扩增出ORF14/15、ORF23/24基因片段,变异区基因序列分析发现,与Gen Bank已公布的标准毒株相比,存在大片段缺失。在变异区ORF14/15,有3个毒株扩增出1 442 bp的片段,4个毒株扩增出630 bp的片段,基于变异区ORF14/15构建的系统进化树显示,这些毒株归属两个不同的分支。在变异区ORF23/24,有2个毒株扩增出大小为2 096 bp的片段,进化分析发现这2个毒株在变异区ORF23/24的遗传距离较近。 相似文献