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1.
从山东地区某发病鸭场周围的麻雀体内分离到1株坦布苏病毒,命名为SDS株,并对分离毒株进行毒力测定。应用RT-PCR技术对分离株全基因组进行扩增并测序,将获得的SDS株坦布苏病毒全基因组序列与已在Gen Bank发表的24株坦布苏病毒和6株其他黄病毒属病毒全基因组序列进行遗传进化分析。结果表明,该株坦布苏病毒的基因组全长为10 990 nt,包含94 nt的5'端非编码区、618 nt的3'端非编码区和一个开放阅读框(3 425个氨基酸),编码11种病毒蛋白;与Gen Bank已发表的坦布苏病毒的核苷酸序列同源性为98.2%~99.5%,氨基酸序列同源性为98.1%~99.4%,其中与鸭源WFZ株(KC990545.1)的核苷酸序列同源性最高为99.5%,与鹅源坦布苏病毒(duck eggdrop syndrome virus strain goose,JQ920424.1)和鸡源坦布苏病毒(CJD50,JF926699)的核苷酸序列同源性较低为98.9%。用Net NGlyc 1.0 Server在线软件对病毒蛋白潜在糖基化位点进行预测,结果表明在SDS株病毒多聚蛋白中共有13个潜在的糖基化位点,分别位于5个不同病毒蛋白中。 相似文献
2.
2010～2011年中国部分地区禽坦布苏病毒感染调查及分子变异分析 总被引：7，自引：0，他引：7
为了解中国目前禽坦布苏病毒在家禽中的流行状况及病毒分子演化特征,对2010～2011年采集自中国沿海及周边的9个省的439份疑似家禽坦布苏病毒感染的临床样品进行了鉴定,并进行了分离毒株NS5基因的分子遗传进化分析。结果表明,2010年采集的187份家禽病料中检测出42份阳性样品,阳性率为21.6%,而2011年采集的252份样品中检测出37份阳性样品,阳性率为13.9%。对部分毒株的NS5基因测序表明,本研究分离的禽坦布苏病毒与已发布的同时期分离的禽坦布苏病毒NS5基因同源性在98%以上,与2010年前分离的鸡源及蚊媒坦布苏病毒的同源性介于83.8%～85.8%之间;所有2010年后分离的禽坦布苏病毒毒株在系统进化上共同构成了一个进化分支。结果表明,2011年禽坦布苏病毒仍在中国沿海及周边的9个省的家禽中流行,病毒NS5基因的测序分析表明,到目前为止在家禽中流行的禽坦布苏病毒未出现明显的分子变异。 相似文献
3.
山东潍坊地区某鸭场养殖的21日龄樱桃谷鸭突然发病,病鸭主要表现翅腿瘫痪等神经症状,排黄绿色或黄白色稀粪,病死率5%左右。为了确定发病鸭群感染病原的种类,首先采集病死鸭肝脏,处理后接种9日龄~11日龄SPF鸡胚进行病原分离。其次,对分离的病原RT-PCR扩增和序列测定,MEGA5绘制系统发育进化树,DNA Star软件分析核苷酸同源性。结果表明,通过SPF鸡胚分离到一株坦布苏病毒(TMUV),命名为TMUV-SDWF。该病毒株基因组全长为10 990nt,编码1个含3 426个氨基酸的多聚蛋白。系统发育进化树分析显示,TMUV-SDAG毒株属于Ⅰa分支。核苷酸同源性分析表明,TMUV-SDSG与GenBank上公布的16株不同TMUV分离株核苷酸同源性高达97.0%~99.8%。成功分离鉴定一株鸭坦布苏病毒并对其进行了遗传进化分析,为鸭坦布苏病毒弱毒或灭活疫苗的筛选制备及该病毒分子流行病学的研究奠定了基础。 相似文献
4.
猪源和鼠源脑心肌炎病毒分离株基因组的比较分析 总被引：4，自引：0，他引：4
为了分析猪源和鼠源脑心肌炎病毒(EMCV)基因组的差异,对分离自同一猪场猪临床样本和鼠组织样本的2株病毒(GX0601和GX0602)进行了全基因组序列测定和比较分析.结果显示,2个分离毒株的基因组全长(包含poly A)分别为7 729和7 725 nt,核苷酸和氨基酸同源性均在99.8%以上.与国外毒株及国内已报道的分离株的序列比较结果表明,2个毒株与BJC3和HBl的核苷酸同源性为98.18%～99.41%,推导的氨基酸序列同源性为99.5%～99.7%,与国外分离株的核苷酸序列和氨基睃序列的同源性分别介于80.53%～99.57%和93.1%～99.5%.基于基因组开放阅读框推导的氨基酸序列的系统进化分析表明,我国分离毒株与国外毒株PEC9、CBNU、BEL-2887A/91和EMCV-R的同源性较高,位于同一个亚群.研究结果提示,猪源与鼠源毒株的基因组具有很高的同源性,鼠是猪场EMCV感染的传染来源. 相似文献
5.
为了解中国目前禽坦布苏病毒在家禽中的流行状况及病毒分子演化特征,对2010-2011年采集自中国沿海及周边的9个省的439份疑似家禽坦布苏病毒感染的临床样品进行了鉴定,并进行了分离毒株NS5基因的分子遗传进化分析。结果表明,2010年采集的187份家禽病料中检测出42份阳性样品,阳性率为21．6％,而2011年采集的252份样品中检测出37份阳性样品,阳性率为13．9％。对部分毒株的NS5基因测序表明,本研究分离的禽坦布苏病毒与已发布的同时期分离的禽坦布苏病毒NS5基因同源性在98％以上,与2010年前分离的鸡源及蚊媒坦布苏病毒的同源性介于83．8％-85．8％之间;所有2010年后分离的禽坦布苏病毒毒株在系统进化上共同构成了一个进化分支。结果表明,2011年禽坦布苏病毒仍在中国沿海及周边的9个省的家禽中流行,病毒NS5基因的测序分析表明,到目前为止在家禽中流行的禽坦布苏病毒未出现明显的分子变异。 相似文献
6.
为了解我国新出现的禽副黏病毒14型（APMV-14）的基因组特性,对2022年从我国家禽中新分离到的2株APMV-14毒株进行了基因组测序和序列分析。结果显示：两株毒株基因组长度均为15 444 nt,结构均为3''-N-P-M-F-HN-L-5'',3''前导序列和5''尾随序列长度分别为55和277 nt,各基因间隔序列长度不等（2~36 nt）;2株毒株F蛋白裂解位点均为99REGR↓L103,具有低致病性禽副黏病毒分子特征;2株毒株HN蛋白长度均为607 aa,明显长于2011年日本分离株APMV14/duck/Japan/11OG0352/2011（580 aa）。同源性分析显示,我国分离的2株不同宿主来源的APMV-14毒株基因组核苷酸同源性为99.5%,与APMV-14代表株11OG0352同源性最高（91.0%）,与其余禽副黏病毒同源性仅为45.0%~52.3%;遗传进化分析显示,2株APMV-14毒株与日本APMV-14分离株（11OG0352）位于同一分支。综上所述,本研究中的2株来源于不同宿主（鸡和鸭）的APMV-14毒株基因组序列高度同源,说明APMV-14已具备水禽—陆禽的跨种传播能力。本研究为APMV-14生物学特性等相关研究奠定了基础。 相似文献
7.
鹅源坦布苏病毒的分离及初步鉴定 总被引：2，自引：0，他引：2
从表现神经症状、软脚的雏鹅中分离到1株病毒,暂命名为GD06株,经RT-PCR检测初步认定所分离到的病毒为坦布苏病毒.序列分析表明,GD06株与鹅源坦布苏病毒JS804株的核苷酸同源性高达99.8％,与鸭源坦布苏病毒(WR株、BYD-1株和SD株)核苷酸同源性分别为99.1％、99.8％和99.8％;与鸡源坦布苏病毒FQ-C1株的同源率高达98.5％;与坦布苏病毒和以色列火鸡脑膜炎病毒的同源性分别为88.3％和76.1％,系统进化分析表明,GD06株病毒与坦布苏病毒共处同一分支. 相似文献
8.
旨在研究引起雏鹅痛风的新型鹅星状病毒流行株特征。本试验从安徽省鹅星状病毒阳性雏鹅组织中进行病毒分离,并对分离的毒株进行全基因组测序,随后进行遗传进化分析。结果表明,病毒液接种9~11日龄鹅胚可成功分离到病毒,将其命名为GASTV-ZM株。IFA （indirect immunofluorescence assay）鉴定为阳性。基因组序列分析表明,ZM株鹅星状病毒基因组全长7 175 nt,ORF2基因核苷酸和氨基酸与2014—2020年间分离毒株的同源性分别为96.7%~98.9%和96.9%~99.0%,ORF2基因编码的氨基酸序列结果显示,3个氨基酸突变位点与以往存在显著差异,ZM株与2016年以来在我国流行的新型鹅星状病毒处于同一进化分支,与2020分离株HNSQ-6株和XT1株同源性较高。本研究为进一步研究该病毒的致病性和致病机理奠定基础。 相似文献
9.
2017年10月,安徽六安某朗德鹅养殖场鹅群出现精神沉郁,采食下降,陆续死亡。对送检病死鹅组织观察,可见肝脏肿胀、质脆、颜色变淡,脑组织水肿、充血、出血。将脑组织研磨后接种SPF鸡胚进行分离病毒。收集死亡鸡胚尿囊液、离心后进行电镜负染发现直径约为40 nm的病毒粒子。利用黄病毒E蛋白基因特异性引物进行的RT-PCR以及序列分析证明该分离株为黄病毒属坦布苏病毒,命名为AHRD2018。将AHRD2018株全基因组进行PCR分段扩增、克隆、测序发现,AHRD2018全基因组全长为10 992 bp。AHRD2018株全基因组与国内鸭源坦布苏病毒分离株同源性最高可达97.7%,处于同一进化分支;与鸽源TMUV同源性为96.7%;与鹅源TMUV同源性为96.7%左右。这一鹅源坦布苏病毒的分离及其全基因组的测定为进一步探究坦布苏病毒的跨宿主传播机制及其致病分子机理提供了材料、打下了基础。 相似文献
10.
《中国兽医杂志》2014,(8)
为了解山东地区犬细小病毒的流行及其变异情况,应用F81细胞从山东地区送检的发病犬粪便中分离出4株细小病毒,根据PCR和电镜技术对其进行鉴定,并对分离株的全基因组进行克隆测序与序列分析。结果表明:所分离到的4株病毒均能在F81细胞上产生明显的细胞病变,经PCR及电镜观察鉴定为犬细小病毒,分别命名为QN1/QN2/QN3/QN4株。全基因组分析结果显示,除QN3株的基因组全长为4 756 nt外,其余3株均为4 757 nt;4个分离株之间全序列核苷酸同源性为99.31%,与GenBank登录的10株具有代表性的CPV核苷酸序列比对,同源性为98.2%99.9%;VP2基因的核苷酸序列同源性为98.5%99.9%;VP2基因的核苷酸序列同源性为98.5%99.9%,氨基酸序列同源性为98.1%99.9%,氨基酸序列同源性为98.1%100%;表明各分离毒株的亲缘关系较近,同属于NewCPV-2a亚型。 相似文献
11.
Shengtao FAN Tiecheng WANG Xiaolong GAO Ying YING Xue LI Yongcheng LI Yuanguo LI Jinzhu MA Heting SUN Dong CHU Yu XU Songtao YANG Qihan LI Yuwei GAO Xianzhu XIA 《The Journal of veterinary medical science / the Japanese Society of Veterinary Science》2015,77(9):1143-1149
Newcastle disease virus (NDV) causes a highly contagious viral disease in poultry and
wild birds, and it can cause significant economic loss worldwide. Eight viral strains were
isolated by inoculating embryonated chicken eggs from the Poyang Lake region of China with
swab samples. All eight of the NDV isolates were identified as class I genotype 3 strains,
but they diverged notablely from class II viruses. Further analysis revealed that all
eight NDV isolates were lentogenic strains containing the
112ERQER↓L117 motif at the F protein cleavage site. The strains
were highly identical and were more species specific (chicken and waterfowl) than site
specific (Nanchang and Duchang regions). The close phylogenetic proximity of these
isolates indicates that viral transmission may happen between poultry and wild birds. Our
study demonstrates that lentogenic class I NDVs exist in clinically healthy wild waterfowl
and poultry within the Poyang Lake region. Active surveillance of these viruses to
determine their evolution and origin is one of the most realistic strategies for
preventing and controlling NDV outbreaks. 相似文献
12.
Newcastle disease virus (NDV) strains isolated from ostriches have been genotyped for the first time by partial sequencing of the F gene to determine the epidemiologic role that this species can play within ND outbreaks. Fifteen additional NDV strains, mostly isolated from chickens but also from pigeons and penguins, were also included in the study to determine genetic relationships with ostriches NDV isolates. High genetic diversity was demonstrated in ostrich NDV isolates, as the 10 isolates were grouped in four distinct NDV genotypes. In agreement with the results obtained when chicken isolates have been molecularly characterized, the predominant genotype in ostriches was the genotype VII. More interestingly, evidences of recombination between genotype II and VII were observed in one ostrich isolate and in two further chicken isolates. Therefore, it seems that ostriches may play a relevant role in the ecology and epidemiology of ND particularly in those regions where they have an increasing farming importance as minor poultry species. 相似文献
13.
Jørgensen PH Handberg KJ Ahrens P Therkildsen OR Manvell RJ Alexander DJ 《The Veterinary record》2004,154(16):497-500
Twenty-one strains of avian paramyxovirus type 1 of low virulence for chickens were isolated in Denmark between 1996 and the beginning of 2003. The low virulence of the strains was demonstrated by sequencing the fusion (F) gene at the cleavage site motif and in some cases by determining the intracerebral pathogenicity index in day-old chicks. By using a panel of monoclonal antibodies it was shown that the isolates belonged to four different antigenic groups (five C2 isolates, six E isolates, six H isolates and four G/Q isolates). They were placed in three distinguishable genetic groups by phylogenetic analysis of a partial sequence of the F gene. The origin of the six E isolates was probably contaminated vaccines; the other viruses were isolated from wild birds and from poultry which probably came into contact with wild birds. 相似文献
14.
Tawatchai Pohuang Niwat Chansiripornchai Achara Tawatsin Jiroj Sasipreeyajan 《Journal of veterinary science (Suw?n-si, Korea)》2009,10(3):219-223
Thirteen field isolates of infectious bronchitis virus (IBV) were isolated from broiler flocks in Thailand between January and June 2008. The 878-bp of the S1 gene covering a hypervariable region was amplified and sequenced. Phylogenetic analysis based on that region revealed that these viruses were separated into two groups (I and II). IBV isolates in group I were not related to other IBV strains published in the GenBank database. Group 1 nucleotide sequence identities were less than 85% and amino acid sequence identities less than 84% in common with IBVs published in the GenBank database. This group likely represents the strains indigenous to Thailand. The isolates in group II showed a close relationship with Chinese IBVs. They had nucleotide sequence identities of 97-98% and amino acid sequence identities 96-98% in common with Chinese IBVs (strain A2, SH and QXIBV). This finding indicated that the recent Thai IBVs evolved separately and at least two groups of viruses are circulating in Thailand. 相似文献
15.
16.
The complete coding region of hemagglutinin genes from 26 influenza A viruses of H9N2 subtype isolated from chicken flocks in China during 1996-2001 was amplified and sequenced. Sequence analysis and phylogenetic studies of H9N2 subtype viruses on the basis of data of 26 viruses in this study and 71 selected strains available in the GenBank were conducted. The results revealed that all the mainland China isolates showed high homology (94.19%-100%) and were assigned to a special sublineage in the major Eurasian lineage, in contrast to the high heterogeneity of Hong Kong SAR isolates. All the 29 mainland China isolates and six Hong Kong SAR strains also had the following common characteristics: sharing the same sequence of proteolytic cleavage site with one additional basic amino acid, RSSR, with only two exceptions; having the same amino acid motif of the receptor-binding site, YWTNV/ALY; 23 of 28 isolates bearing seven potential glycosylation sites and the remaining five having six; and sharing characteristic deduced amino acid residues Asn-183 at the receptor-binding site and Ser-130 at the potential glycosylation site. We concluded that the H9N2 subtype influenza viruses circulating in chicken flocks in China since the 1990s and Ck/HK/G9/97-like viruses isolated in Hong Kong SAR should have a common origin, whereas Qu/HK/G1/97-like viruses including human strains isolated in Hong Kong SAR might originate from other places. The available evidence also suggests that the H9N2 viruses of special lineage themselves and factors prone to secondary infections may contribute to the widespread and dominant distribution of viruses of this subtype in chicken flocks in China and other Asian countries. 相似文献
17.
Domestic poultry act as a reservoir for persistent H5N1 endemicity in Vietnam, and the circulation of poultry flocks across farms and to market is thought to drive the spatial movement and evolution of avian influenza viruses. Using a dataset of complete or nearly full genomic sequences from highly pathogenic H5N1 avian influenza viruses collected in domestic poultry in Vietnam from 2003 to 2007, we explore potential differences in genetic characteristics according to species of isolation and the spatiotemporal characteristics of the viruses. Clustering algorithms and ANOVA indicate that H5N1 viruses in Vietnam show differences in the amount of genetic change that chicken viruses experience as compared to duck viruses, with duck viruses showing higher rates of molecular evolution on all eight of influenza's gene segments. There also exist distinct patterns of genetic differentiation according to the year in which they were isolated. These findings suggest that genetic evolution of avian influenza viruses is continuous through time but could also be mediated by the species in which the viruses occur, information that has implications for prevention efforts. 相似文献
18.
Ebrahim Kord Amir Kaffashi Hadi Ghadakchi Fatemeh Eshratabadi Zakaria Bameri Abdelhamed Shoushtari 《Tropical animal health and production》2014,46(3):549-554
Highly pathogenic avian influenza (HPAI) H5N1 virus is causing the death of a large number of wild birds and poultry. HPAI H5N1 was reported in the north of Iran in 2011. In this study, two A/Chicken/Iran/271/2011 and A/Duck/Iran/178/2011 viruses were genetically characterized by sequence analysis of Hemagglutinin (HA) and Neuraminidase (NA) genes. Phylogenetic analysis revealed that these viruses were different from previous Iranian isolates (Clade 2.2) and belonged to the subclade 2.3.2.1. The results showed that the detected viruses are almost identical to each other and closely related to HPAI H5N1 strains isolated in Mongolia in 2010. Based on the amino acid sequence analysis, these viruses at their HA cleavage sites contained the multibasic amino acid motif PQRERRRK-R/GLF lacking a lysine residue compared with the previous reports of the same motif. There is also a 20-amino acid deletion (resides 49–69) in the NA stalk similar to other viruses isolated after 2000. It seems that introduction of HPAI H5N1 to Iran might have happened by wild birds from Mongolian origin virus. 相似文献