Cloning and characterization of 2S albumin, Car i 1, a major allergen in pecan     

Sharma GM  Irsigler A  Dhanarajan P  Ayuso R  Bardina L  Sampson HA  Roux KH  Sathe SK 《Journal of agricultural and food chemistry》2011,59(8):4130-4139

Although pecans are associated with IgE-mediated food allergies, the allergens responsible remain to be identified and characterized. The 2S albumin gene was amplified from the pecan cDNA library. Dot-blots were used to screen the recombinant protein with pecan allergic patients' serum. The affinity purified native protein was analyzed by Edman sequencing and mass spectrometry/mass spectrometry (MS/MS) analysis. Cross-reactivity with walnut was determined by inhibition enzyme-linked immunosorbent assay (ELISA). Sequential epitopes were determined by probing the overlapping peptides with three different patients' serum pool. The 3-dimensional homology model was generated, and the locations of the pecan epitopes were compared with those of known sequential epitopes on other allergenic tree nut homologues. Of 28 patients tested by dot-blot, 22 (79%) bound to 2S albumin, designated as Car i 1. Edman sequencing and the MS/MS sequencing of native 2S albumin confirmed the identity of recombinant (r) Car i 1. Both pecan and walnut protein extracts inhibited the IgE-binding to rCar i 1. Sequential epitope mapping indicated weak, moderate, and strong reactivity against 12, 7, and 5 peptides, respectively. Of the 11 peptides recognized by all serum pools, 5 peptides were strongly reactive and located in 3 discrete regions of the Car i 1 (amino acids 43-57, 67-78, and 106-120). Three-dimensional modeling revealed IgE-reactive epitopes to be solvent accessible and share significant homology with other tree nuts providing a possible basis for previously observed cross-reactivity.  相似文献   

Canopy level fog occurrence in a tropical lowland forest of French Guiana as a prerequisite for high epiphyte diversity     

Andre Obregon  Christine Gehrig-DownieS. Robbert Gradstein  Ruetger RollenbeckJoerg Bendix 《Agricultural and Forest Meteorology》2011,151(3):290-300

Fog frequency and the meteorological processes leading to fog formation have never been studied in depth in tropical lowland forest areas. This study provides detailed evidence of frequent fog occurrence in lowland valleys of central French Guiana. Fog frequency showed a clear diurnal course, with a maximum before sunrise; average fog duration was 4.6 h. The diurnal course of visibility was positively correlated with the diurnal course of humidity in the above-canopy air. Fog persistence correlated significantly with atmospheric parameters during the dry season, but not during the rainy season. The main trigger of fog development in the lowland forest seemed to be precipitation, leading to higher soil moisture, greater evapotranspiration and, thus, higher water content of air. An increasing temperature difference between valley and hill sites after sunset, together with more frequent down-slope winds during nights with long fog periods, points at some influence of katabatic flows. The frequent occurrence of fog in the valleys correlated with significantly higher epiphyte diversities in valley forests as compared to hill forests, and supported the occurrence of the hitherto undescribed, epiphyte-rich “tropical lowland cloud forest” (LCF) in the valleys. The higher epiphyte diversity in LCF coincided with significantly higher relative air humidity in LCF than in hill forest. The ecological benefits of fog for the epiphytes in LCF are surplus of moisture and delayed onset of the stress period, particularly in the dry season.  相似文献   

Predicting potential habitat and population size for reintroduction of the Far Eastern leopards in the Russian Far East     

Mark Hebblewhite  Dale G. Miquelle  Andre A. Murzin  Vladimir V. Aramilev  Dimitri G. Pikunov 《Biological conservation》2011,(10):2403-2413

The Far Eastern Leopard (Panthera pardus orientalis; Schlegel, 1857) is perhaps the world’s most endangered large felid subspecies occurring in a single population of ?30 adults, and faces immediate risk of extinction unless additional populations can be established within its historical range in the Russian Far East. We used locations of leopard tracks (and their ungulate prey) collected from snow track surveys from 1997 to 2007 to develop resource selection functions (RSF) to identify potential habitat for reintroduction. We compared models that include prey versus those based on landscape covariates, and also included covariates related to human-induced mortality. To estimate potential population size, we used a habitat-based population estimate based on the ratio of population size and RSF value of occupied range. Far Eastern leopards selected for areas with high ungulate density, lower-elevation Korean pine forests on southwest facing slopes, and in areas far from human activity. Using this RSF model, we identified a total of 10,648 km² in eight patches >500 km² of potential Far Eastern leopard habitat that could harbor a potential population of 105.3 (57.9–147.2) adults. In combination with the existing population, successful reintroductions could result in a total of 139.2 (76.5–194.6) adult leopards, a 3–4-fold increase in population size. Our habitat models assist the reintroduction planning process by identifying factors that predict presence and potential suitable habitat. Identifying the highest quality, most connected patches, in combination with appropriate selection and training of released animals, is recommended for successfully reintroducing Far Eastern leopards, and potentially other endangered carnivores into the wild.  相似文献   

Assessment of the posterior segment of the cat eye by optical coherence tomography (OCT)     

Gekeler F  Gmeiner H  Völker M  Sachs H  Messias A  Eule C  Bartz-Schmidt KU  Zrenner E  Shinoda K 《Veterinary ophthalmology》2007,10(3):173-178

OBJECTIVES: To assess the feasibility of optical coherence tomography (OCT) for examining the cat ocular fundus, to provide normative data on retinal thickness in different fundus regions, and to demonstrate selected surgically induced vitreoretinal pathologies in the cat. ANIMAL STUDIED: Forty-five eyes of 28 healthy domestic cats and two eyes of domestic cats that had undergone subretinal implantation surgery for a visual prosthesis were examined. PROCEDURES: An optical coherence tomograph (Zeiss-Humphrey) was used to examine the anesthetized animals. At least five vertical and five horizontal scans in regular distribution were recorded for each cat including (1) the peripapillary region, (2) the area centralis, and (3) the peripheral retina. Thickness was measured manually at five locations in each scan. Retinal thickness was compared in the three above-mentioned fundus regions, between eyes and between vertical and horizontal scans. OCT was additionally performed in animals with retinal detachment and a subretinal visual prosthesis. RESULTS: OCT measurements required only minimal adjustments of human settings and yielded high quality images. In comparison to humans intraretinal layers were more difficult to differentiate. Retinal thickness was highest in the peripapillary region (245 +/- 21 microm), followed by the peripheral retina (204 +/- 11 microm) and the area centralis (182 +/- 11 microm; all P < 0.0001). There was no statistically significant difference between right and left eye or between vertical and horizontal scans. OCT demonstrated retinal detachment, an iatrogenic break and a subretinal prosthetic device in high detail. CONCLUSIONS: Retinal thickness was measurable with high precision; values compare well to older histologic studies. OCT bears significant advantages over histology in enabling one to repeat measurements in living animals and thus allowing longitudinal studies. Various vitreoretinal pathologies common in feline eyes are detectable and quantifiable by OCT.  相似文献   

Comparison of noninvasive cardiac output measured by use of partial carbon dioxide rebreathing or the lithium dilution method in anesthetized foals     

Valverde A  Giguère S  Morey TE  Sanchez LC  Shih A 《American journal of veterinary research》2007,68(2):141-147

OBJECTIVE: To compare cardiac output (CO) measured by use of the partial carbon dioxide rebreathing method (NICO) or lithium dilution method (LiDCO) in anesthetized foals. SAMPLE POPULATION: Data reported in 2 other studies for 18 neonatal foals that weighed 32 to 61 kg. PROCEDURES: Foals were anesthetized and instrumented to measure direct blood pressure, heart rate, arterial blood gases, end-tidal isoflurane and carbon dioxide concentrations, and CO. Various COs were achieved by administration of dobutamine, norepinephrine, vasopressin, phenylephrine, and isoflurane to allow comparisons between LiDCO and NICO methods. Measurements were obtained in duplicate or triplicate. We allowed 2 minutes between measurements for LiDCO and 3 minutes for NICO after achieving a stable hemodynamic plane for at least 10 to 15 minutes at each CO. RESULTS: 217 comparisons were made. Correlation (r = 0.77) was good between the 2 methods for all determinations. Mean +/- SD measurements of cardiac index for all comparisons with the LiDCO and NICO methods were 138 +/- 62 mL/kg/min (range, 40 to 381 mL/kg/min) and 154 +/- 55 mL/kg/min (range, 54 to 358 mL/kg/min), respectively. Mean difference (bias) between LiDCO and NICO measurements was -17.3 mL/kg/min with a precision (1.96 x SD) of 114 mL/kg/min (range, -131.3 to 96.7). Mean of the differences of LiDCO and NICO measurements was 4.37 + (0.87 x NICO value). CONCLUSIONS AND CLINICAL RELEVANCE: The NICO method is a viable, noninvasive method for determination of CO in neonatal foals with normal respiratory function. It compares well with the more invasive LiDCO method.  相似文献   

Crystal structure of a photolyase bound to a CPD-like DNA lesion after in situ repair     

Mees A  Klar T  Gnau P  Hennecke U  Eker AP  Carell T  Essen LO 《Science (New York, N.Y.)》2004,306(5702):1789-1793

DNA photolyases use light energy to repair DNA that comprises ultraviolet-induced lesions such as the cis-syn cyclobutane pyrimidine dimers (CPDs). Here we report the crystal structure of a DNA photolyase bound to duplex DNA that is bent by 50 degrees and comprises a synthetic CPD lesion. This CPD lesion is flipped into the active site and split there into two thymines by synchrotron radiation at 100 K. Although photolyases catalyze blue light-driven CPD cleavage only above 200 K, this structure apparently mimics a structural substate during light-driven DNA repair in which back-flipping of the thymines into duplex DNA has not yet taken place.  相似文献   

A potent and broad neutralizing antibody recognizes and penetrates the HIV glycan shield     

Pejchal R  Doores KJ  Walker LM  Khayat R  Huang PS  Wang SK  Stanfield RL  Julien JP  Ramos A  Crispin M  Depetris R  Katpally U  Marozsan A  Cupo A  Maloveste S  Liu Y  McBride R  Ito Y  Sanders RW  Ogohara C  Paulson JC  Feizi T  Scanlan CN  Wong CH  Moore JP  Olson WC  Ward AB  Poignard P  Schief WR  Burton DR  Wilson IA 《Science (New York, N.Y.)》2011,334(6059):1097-1103

The HIV envelope (Env) protein gp120 is protected from antibody recognition by a dense glycan shield. However, several of the recently identified PGT broadly neutralizing antibodies appear to interact directly with the HIV glycan coat. Crystal structures of antigen-binding fragments (Fabs) PGT 127 and 128 with Man(9) at 1.65 and 1.29 angstrom resolution, respectively, and glycan binding data delineate a specific high mannose-binding site. Fab PGT 128 complexed with a fully glycosylated gp120 outer domain at 3.25 angstroms reveals that the antibody penetrates the glycan shield and recognizes two conserved glycans as well as a short β-strand segment of the gp120 V3 loop, accounting for its high binding affinity and broad specificity. Furthermore, our data suggest that the high neutralization potency of PGT 127 and 128 immunoglobulin Gs may be mediated by cross-linking Env trimers on the viral surface.  相似文献   

Information transduction capacity of noisy biochemical signaling networks     

Cheong R  Rhee A  Wang CJ  Nemenman I  Levchenko A 《Science (New York, N.Y.)》2011,334(6054):354-358

Molecular noise restricts the ability of an individual cell to resolve input signals of different strengths and gather information about the external environment. Transmitting information through complex signaling networks with redundancies can overcome this limitation. We developed an integrative theoretical and experimental framework, based on the formalism of information theory, to quantitatively predict and measure the amount of information transduced by molecular and cellular networks. Analyzing tumor necrosis factor (TNF) signaling revealed that individual TNF signaling pathways transduce information sufficient for accurate binary decisions, and an upstream bottleneck limits the information gained via multiple integrated pathways. Negative feedback to this bottleneck could both alleviate and enhance its limiting effect, despite decreasing noise. Bottlenecks likewise constrain information attained by networks signaling through multiple genes or cells.  相似文献   

Resistance of rumen bacteria murein to bovine gastric lysozyme     

María G Domínguez-Bello  M Andreína Pacheco  Marie C Ruiz  Fabián Michelangeli  Matthias Leippe  Miguel A de Pedro 《BMC ecology》2004,4(1):1-6

Background

In many species of birds, pair bonded males and females precisely co-ordinate their vocalisations to form duets. Duetting behaviour, although still somewhat of an enigma, is thought to function primarily in territorial defence and mate guarding. We identify an additional function of duetting in an afrotropical bird, the tropical boubou (Laniarius aethiopicus), that uses one duet type as a postconflict display probably to advertise victory to other boubous.

Results

We simulated intrusions into boubou territories in the field in Ivory Coast, West Africa using playbacks of four different types of boubou duets to test the use of the presumptive acoustic victory display before, during and after playbacks. These staged encounters resulted in either retreat of the focal birds during playback or continued presence accompanied by vocal displays after playback had ceased. Losers of encounters never sung after retreating whereas 11 out of 18 pairs sung the presumptive victory duet after the encounter. Analysis revealed that the presumptive victory display was sung significantly more often after than before or during the playback treatment.

Conclusion

We conclude that, most likely, the investigated duet type is a postconflict victory display – a novel function of duets. Furthermore the duet is a rare example among birds of a context-specific song. The conspicuousness of the display suggests that it is directed not only to losers of an agonistic encounter but also to other pairs of birds in neighbouring territories.  相似文献   

Induction of high affinity nitrate and ammonium uptake systems in wheat     

Alan H. Goldstein  Andre D. Hunziker 《Journal of plant nutrition》2013,36(8):721-730

Abstract

The ability of 7 day old wheat seedlings to take up nitrate or ammonium from hydroponic solution was measured. Seedlings were grown under fully aerated hydroponic conditions. The growth solution consisted of either 0.5 mM CaSO₄ alone or in combination with high nitrate (5 mM NO₃ ^‐ ), high ammonium (2 mM NH₄ ⁺) or modified 1/10 Hoaglands solution with nitrate N only (14 mM) or ammonium N only (2 mM). After washing the roots for one hour in CaSO₄, nitrate or ammonium uptake was measured with an ion selective electrode. Plants grown in high nitrate were unable to take up nitrate from a 0.1 mM external solution. Those grown in CaSO₄ were able to take up nitrate at the same external concentration (flux = 10.2 +/‐ 3.0 μmol nitrate/g dry wtlbh). The same result was seen for plants grown in high ammonium vs those grown in CaSO₄ (flux = 21.0 +/‐ 10.0 μmol/g dry wtlbh). Similar results were obtained when modified Hoagland's solution was substituted for the high N solutions. These data indicate that wheat roots possess both high and low affinity nitrate and ammonium uptake systems. The data further indicate that, for a given ion, the high and low affinity systems do not operate simultaneously under high N conditions. The high affinity system is switched off in the range of 1 mM for both ionic forms of N. Developmental studies show that the expression of the high affinity trait is reversible and may be induced (repressed) by conditioning for 24 h in low (high) N media. Plants grown in high N solutions showed efflux of the ion under assay conditions. Neither ion interfered with the induction/repression of the high affinity trait for the other under the conditions used in this study.  相似文献