Detection of novel kobu-like viruses in Japanese black cattle in Japan     

Konosuke OTOMARU  Yuki NAOI  Kei HAGA  Tsutomu OMATSU  Takehiko UTO  Motoya KOIZUMI  Tsuneyuki MASUDA  Hiroshi YAMASATO  Hikaru TAKAI  Hiroshi AOKI  Shinobu TSUCHIAKA  Kaori SANO  Sachiko OKAZAKI  Yukie KATAYAMA  Mami OBA  Tetsuya FURUYA  Junsuke SHIRAI  Kazuhiko KATAYAMA  Tetsuya MIZUTANI  Makoto NAGAI 《The Journal of veterinary medical science / the Japanese Society of Veterinary Science》2016,78(2):321-324

During surveillance for bovine diarrhea of unknown causes in Japanese black cattle in Kagoshima Prefecture, Japan, we found two types of novel kobu-like viruses in fecal samples of calves. Sequence analyses revealed that they had L protein and 2A protein with H-box/NC sequence motif, which are present in kobuviruses. Phylogenetic analysis revealed that they were related to kobuviruses; however, they clustered apart from other kobuviruses. In the prevalence study of two types of novel kobu-like viruses, 16.9% and 10.4% prevalence of these viruses were observed in the feces of diarrheal calves in this area.  相似文献   

Environmental influences on late-summer individual Japanese eel diel activity and space utilization patterns in a shallow western Japan brackish lake     

Itakura  Hikaru  Miyake  Yoichi  Wakiya  Ryoshiro  Kimura  Shingo 《Fisheries Science》2022,88(1):29-43

The late-summer diel activity patterns and space utilization of five Japanese eels, Anguilla japonica, were investigated using an acoustic telemetry positioning system in a shallow brackish lake in western Japan. Eels were highly nocturnal and crepuscular, with 98.1% of positions detected between sunset and sunrise, and were more active during dusk and dawn compared with nighttime, and during full moons compared with other lunar periods. Most diurnal activity occurred during darker conditions, and two individuals extended their activity into the morning, suggesting that overcast skies reduced light intensity and prolonged nocturnal activity into daytime. Individual eels had different home-range patterns, but appeared to rest nearshore during the day, with space utilization expanding offshore at dusk and night, followed by returning to nearshore at dawn. Their home ranges and core activity areas were bordered by the shoreline, with eels tending to exhibit small activity spaces and strong site fidelity. This study provides valuable ecological knowledge about the individual behavior of eels inhabiting a small brackish lake at the northern limit of the natural distributional range of the species along the Sea of Japan, which can contribute to management and conservation of the species.

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Relationship between the peripheral concentrations of estradiol-17β (E2) and preovulatory characteristics of cumulus-oocyte complexes (COCs) during superovulation treatment in Japanese Black cows     

Kitahara G  Kamimura S  Hamana K 《The Journal of reproduction and development》2011,57(1):159-162

The relationship between the peripheral concentrations of estradiol-17β (E(2)) and the preovulatory characteristics of cumulus oocyte complexes (COCs) during superovulation treatment was investigated in Japanese Black cows. A superovulation regimen with FSH treatment in a descending manner was commenced on day 7 (n=3) or day 10 (n=2) of the estrous cycle (day 0=estrus). Peripheral blood was collected to measure E(2) concentrations twice a day throughout the treatment. Ovariectomies were performed at 100 h after the initial FSH treatment in five cows. Every follicle more than 8 mm in diameter was isolated from the ovaries, and cumulus-oocyte complexes (COCs) were gently aspirated. The COCs were then separated into three groups based on the characteristics of the cumulus (compact, expanded and denuded) and subgrouped based on the stage of the nucleus in the oocytes (GV, GVBD). Plasma E(2) concentrations tended to increase gradually and reached the peak level at around 84 h (E(2)-84: n=3) or 96 h (E(2)-96: n=2) after the initial FSH treatment. The ratio of COCs with expanded cumulus was significantly higher in E(2)-84 than in E(2)-96 (P<0.01). However, there was no difference in the ratio of oocytes showing GVBD between E(2)-84 and E(2)-96 (P=0.73), and the characteristics of the cumulus did not affect the stage of the nucleus in the oocytes in either groups (compact, expanded and nude; P=0.61, 0.81 and 1.00). It was possible that the time until the peak plasma E(2) concentrations after the FSH treatment could become an indicator for the maturation of follicles and oocytes in preovulatory follicles during superovulation treatment in Japanese Black cows.  相似文献   

Isolation of 1,796 SSR clones from SSR-enriched DNA libraries of bunching onion (Allium fistulosum)     

Hikaru Tsukazaki  Tsukasa Nunome  Hiroyuki Fukuoka  Hiroyuki Kanamori  Izumi Kono  Ken-ichiro Yamashita  Tadayuki Wako  Akio Kojima 《Euphytica》2007,157(1-2):83-94

Bunching onion (Allium fistulosum L.) is one of the most important vegetables in Japan. To establish a genetic basis for molecular breeding of bunching onion, we isolated 1,796 simple sequence repeat (SSR) clones by large-scale sequencing of SSR-enriched genomic DNA libraries. Of these, 1,331 (74.1%) contained (GT) _n repeats (n > 5), while 314 (17.5%) were (GA) _n -containing clones. The average number of SSR repeats was 10.5 and 10.4 in the (GT) _n - and (GA) _n -containing clones, respectively. In a sample of five bunching onion inbred lines, an average of 3.2 alleles were detected in the 100 SSR loci investigated, with the polymorphic information content averaging 0.55. These results indicate that bunching onion SSRs are very rich sources of highly informative genetic markers.  相似文献   

Acaricidal activity of components of Cryptomeria japonica against spider mites     

Yohei Yamashita  Naoya Hashimoto  Norihisa Kusumoto  Hiromi Saijo  Ikumi Goto  Hikaru Kobayashi  Yuka Kurihara  Koetsu Takahashi  Tatsuya Ashitani 《Journal of Wood Science》2015,61(1):60-64

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Forest soil and litter as filtering media for suspended sediment     

Yoichi Okura  Hikaru Kitahara  Toshiaki Sammori 《Journal of Forest Research》1997,2(1):9-14

A series of two filtration experiments were conducted to evaluate the filtration function of forest soil experimentally. The first experiment evaluated the differences between the filtration capabilities of the A₀ horizon and A horizon, and the effect of overstory species on the filtration function of the A₀ horizon. Undisturbed A₀, A and A₀+A horizons were collected for the filter mediums with cylindrical samplers. Leaves ofQuercus serrata, Quercus myrsinaeforia, Sasa senanensis Pinus densiflora, Chamaecyparis obtusa, andCryptomeria japonica were also packed in the samplers. Various suspended sediment concentration of water were sprayed at constant intensity on the surface of samples. Filtering coefficients were not affected by SS concentration in all samples, and the order of filtering coefficient was: A₀ horizons>A₀+A horizons>A horizons in undisturbed forest soil samples, andQuercus serrata>Sasa senanensis>Quercus myrsinaeforia>Pinus densiflora”Chamaecyparis obtusa>Cryptomeria, japonica in leaf samples. These results led to the conclusion that SS from managed forests can best be prevented by buffer zones where a thick A₀ horizon is maintained. The second experiment evaluated the effect of turbid water supply rate on the filtration capacity. Undisturbed A horizons and four leaf types,Quercus serrata, Pinus densiflora, Chamaecyparis obtusa, andCryptomeria japonica were used as filter mediums. Filtering coefficients were inversely proportional to supply rate of turbid water in all samples.  相似文献   

Structure of small lignin fragment retained in water-soluble polysaccharide extracted from sugi MWL isolation residue     

Hikaru?AimiEmail author  Yuji?Matsumoto  Gyosuke?Meshitsuka 《Journal of Wood Science》2004,50(5):415-421

In order to analyze the structural features of small lignin fragments that are closely associated to polysaccharides, lignin carbohydrate complex (LCC) with low lignin content was extracted with water from the residual wood meal (sugi, Cryptomeria japonica) of milled wood lignin (MWL) isolation. This LCC exhibited almost the same neutral sugar composition as those extracted by other LCC solvents (dimethylformamide, dimethylsulfoxide, and others) but the lignin content was only 5.3%, which was much lower than others. Gel filtration chromatography demonstrated that lignin in this LCC was found together with carbohydrates at the higher molecular weight region, but after the treatment with carbohydrate-degrading enzymes the apparent molecular weight of both lignin and carbo-hydrates decreased significantly. Using a mild alkaline treatment, the apparent molecular weight of lignin also decreased while that of polysaccharide was not affected. These data indicated that lignin in this LCC is present as small fragments attached to high molecular weight polysaccharide at least partly by alkali-unstable linkages. Structural analysis by ozonation method revealed that the lignin in this LCC was lower in erythro/threo ratio of -O-4 structure and relatively richer in the threo type structure carrying C-aryl linkages at -position (-5 and/or -1) than other lignin fractions present in MWL, LCCs extracted by other solvents, and their extraction residues. It was suggested that the chemical structure of lignin closely associated to carbohydrates was different from that of the main part of lignin.This paper was presented in part at the 52nd Annual Meeting of the Japan Wood Research Society, Gifu, Japan, April 2002, at the 47th Lignin Symposium, Gifu, Japan, October 2002, and at the 12th International Symposium on Wood and Pulping Chemistry, Madison, USA, June 2003  相似文献   

Contribution of denitrification and autotrophic and heterotrophic nitrification to nitrous oxide production in andosols     

K. Inubushi  H. Naganuma  S. Kitahara 《Biology and Fertility of Soils》1996,23(3):292-298

To quantify the contribution of denitrification and autotrophic and heterotrophic nitrification to N₂O production in Andosols with a relatively high organic matter content, we first examined the effect of C₂H₂ concentrations on N₂O production and on changes in mineral N contents. The optimum C₂H₂ concentration for inhibiting autotrophic nitrification was 10 Pa. Secondly, and Andosol taken from an arable field was incubated for 32 days at 30°C at 60, 80, and 100% water-holding capacity with or without the addition of NH ₄ ⁺ or NO _inf3 ^sup- (200 mg N kg^-1), and subsamples collected every 4–8 days were further incubated for 24 h with or without C₂H₂ (10 Pa). At 60 and 80% water-holding capacity with NH ₄ ⁺ added, 87–92% of N₂O produced (200–250 g N₂O–N kg^-1) was derived from autotrophic nitrification. In contrast, at 100% water-holding capacity with or without added NO _inf3 ^sup- , enormous amounts of N₂O (29–90 mg N₂O–N kg^-1) were produced rapidly, mostly by denitrification (96–98% of total production). Thirdly, to examine N₂O production by heterotrophic nitrification, the Andosol was amended with peptone or NH ₄ ⁺ (both 1000 mg N kg^-1)+citric acid (20 g C kg^-1) and with or without dicyandiamide (200 mg N kg^-1). Treatment with citric acid alone or with citric acid+dicyandiamide suppressed N₂O production. In contrast, peptone increased N₂O production (5.66 mg N₂O–N kg^-1) mainly by denitrification (80% of total production). However, dicyandiamide reduced N₂O production to 1.1 mg N₂O–N kg^-1. These results indicate that autotrophic nitrification was the main process for N₂O production except at 100% water-holding capacity where denitrification became dominant and that heterotrophic nitrification had a lesser importance in the soils examine.Dedicated to Professor J. C. G. Ottow on the occasion of his 60th birthday  相似文献   

Decadal change in the diets of the surface migratory myctophid fish Myctophum nitidulum in the Kuroshio region of the western North Pacific: Predation on sardine larvae by myctophids     

Hikaru  WATANABE  Kouichi  KAWAGUCHI 《Fisheries Science》2003,69(4):716-721

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Daily growth increment formation and its lunar periodicity in otoliths of the myctophid fish Myctophum asperum (Pisces: Myctophidae)     

Amane Hayashi  Kouichi Kawaguchi  Hikaru Watanabe  Minoru Ishida 《Fisheries Science》2001,67(5):811-817

ABSTRACT: The surface-migratory myctophid fish, Myctophum asperum , of the western North Pacific was found to have daily growth increments of its sagittal otolith, which also exhibited lunar periodicity in the deposition of increments. Daily deposition of the otolith increments was verified because the width of the marginal increment increased during the night and early morning between 20.00 h and 08.00 h and its growth stopped during the day. An autocorrelation analysis of the increment widths, which were measured consecutively in 11 specimens covering 33 synodic months, also showed a lunar periodicity in increment deposition. The mean increment widths during five days around the time of a full moon were significantly narrower than those around a new moon in 18 of the 33 full moon cases ( P < 0.01: Student's t -test) and, on average, tended to be narrow in 29 cases. The cause of this tendency is thought to be slower growth caused by staying in deeper and colder habitat due to the suppression of diel vertical migration and/or lower food availability resulting from the possible dispersion of zooplankton during the full moon period.  相似文献