The impact of truncating data on the predictive ability for single‐step genomic best linear unbiased prediction          下载免费PDF全文

Jeremy T. Howard  Tom A. Rathje  Caitlyn E. Bruns  Danielle F. Wilson‐Wells  Stephen D. Kachman  Matthew L. Spangler 《Zeitschrift für Tierzüchtung und Züchtungsbiologie》2018,135(4):251-262

Simulated and swine industry data sets were utilized to assess the impact of removing older data on the predictive ability of selection candidate estimated breeding values (EBV) when using single‐step genomic best linear unbiased prediction (ssGBLUP). Simulated data included thirty replicates designed to mimic the structure of swine data sets. For the simulated data, varying amounts of data were truncated based on the number of ancestral generations back from the selection candidates. The swine data sets consisted of phenotypic and genotypic records for three traits across two breeds on animals born from 2003 to 2017. Phenotypes and genotypes were iteratively removed 1 year at a time based on the year an animal was born. For the swine data sets, correlations between corrected phenotypes (Cp) and EBV were used to evaluate the predictive ability on young animals born in 2016–2017. In the simulated data set, keeping data two generations back or greater resulted in no statistical difference (p‐value > 0.05) in the reduction in the true breeding value at generation 15 compared to utilizing all available data. Across swine data sets, removing phenotypes from animals born prior to 2011 resulted in a negligible or a slight numerical increase in the correlation between Cp and EBV. Truncating data is a method to alleviate computational issues without negatively impacting the predictive ability of selection candidate EBV.  相似文献   

Canine demodicosis: a retrospective study of a veterinary hospital population in California,USA (2000–2016)          下载免费PDF全文

Daniel G Bowden  Catherine A. Outerbridge  Marguerite B. Kissel  Jerome N. Baron  Stephen D. White 《Veterinary dermatology》2018,29(1):19-e10

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An unresponsive progressive pustular and crusting dermatitis with acantholysis in nine cats          下载免费PDF全文

Catherine A. Outerbridge  Verena K. Affolter  Leslie A. Lyons  Samantha L. Crothers  Andrea T. H. Lam  Terri E. Bonenberger  Stephen D. White 《Veterinary dermatology》2018,29(1):81-e33

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Local agro-industrial by-products with potential use in Ghanaian aquaculture: a review     

Kwasi Adu Obirikorang  Stephen Amisah  Simon Cudjoe Fialor  Peter Vilhelm Skov 《Aquaculture International》2015,23(2):403-425

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Does sand content in spawning substrate result in early larval emergence? Evidence from a lithophilic cyprinid fish     

Tea Ba&#x;i&#x;  J. Robert Britton  Stephen P. Rice  Andrew G. Pledger 《Ecology of Freshwater Fish》2019,28(1):110-122

The spawning success of lithophilic salmonids is strongly influenced by the fine sediment content (“fines”) of spawning substrates, yet knowledge on the impacts of fines on the spawning of non‐salmonid lithophiles remains limited, despite their ecological and socio‐economic importance in European rivers. Consequently, the aim here was to use an ex‐situ experiment to investigate the impact of sand content on egg survival and timing of larval emergence of the surface‐spawning cyprinid European barbel Barbus barbus. Thirty incubator boxes within a recirculating system were filled with one of five experimental sediment mixtures (0%–40% sand by mass) that each contained 300 fertilised eggs at a depth of 50 mm. Emerged, free‐swimming larvae were captured and counted daily to assess grain‐size effects on larval survival and emergence. Specifically, total proportion of emerged larvae, cumulative daily proportion of emerged larvae and time required to reach 50% emergence were measured during the study. Whilst the proportion of sand in the sediments did not have a significant impact on egg‐to‐emergence survival (mean survival per treatment 75%–79%), it significantly affected the timing of larval emergence to the water column; early emergence was detected in treatments with elevated sand content (on average, 50% emergence after 12–13 days versus 19 days in the control). Similar to findings from salmonid studies, these results suggest high sand content in spawning gravels can influence timing of larval emergence and potentially cyprinid lithophilic fish survival.  相似文献   

Evidence for functional G-coupled protein receptors 43 and 120 in subcutaneous and intramuscular adipose tissue of Angus crossbred steers     

Lindsay Westbrook  Bradley J Johnson  Gyoungok Gang  Kentaro Toyonaga  Jinhee Hwang  Kiyong Chung  Stephen B Smith 《Journal of animal science》2021,99(6)

We conducted 3 independent experiments to demonstrate functional G-coupled protein receptor 43 (GPR43) and GPR120 in bovine intramuscular (i.m.) and subcutaneous (s.c.) adipose tissues. We hypothesized that media volatile fatty acids and long-chain fatty acids would affect cAMP-activated protein kinase-alpha (AMPKα) protein expression and cAMP concentrations differently in i.m. and s.c. adipose tissue. Experiment 1: oleic acid (18:1n-9) decreased phosphorylated AMPKα protein (p-AMPKα) and the p-AMPKα/AMPKα protein ratio in i.m. preadipocytes, increased the p-AMPKα/AMPKα protein ratio in bovine satellite cells, and had no effect in s.c. preadipocytes. Experment 2: ex vivo explants from the 5th to 8th longissimus thoracic rib muscle section of Angus crossbred steers were cultured 48 hr in media containing 0.25 µM ciglitizone, 5 mM glucose, and 5 mM acetate, in the absence or the presence of 100 µM oleic acid. Oleic acid increased acetate incorporation into fatty acids and GPR43 gene expression in i.m. adipose tissue (P < 0.05), but oleic acid had no effect on fatty acid synthesis or GPR43 expression in s.c. adipose tissue. Experiment 3: fresh s.c. and i.m. adipose tissue from the 5th to 8th longissimus thoracic rib muscle section of Angus crossbred steers was transferred immediately to 6-well culture plates containing 3 mL of KHB/Hepes/5 mM glucose. Samples were preincubated with 0.5 mM theophylline plus 10 μM forskolin for 30 min, after which increasing concentrations of acetate or propionate (0, 10⁻³, 10^−2.3, and 10⁻³ M) in the absence or the presence of 100 μM oleic acid or 100 µM palmitic acid (16:0) were added to the incubation media. Acetate had no effect on forskolin-stimulated cAMP production in s.c. adipose tissue but decreased cAMP in i.m. adipose tissue (P < 0.05); this indicates a functional GPR43 receptor in i.m. adipose tissue. The combination of 10⁻² M acetate and oleic acid decrease cAMP production in s.c. adipose tissue, consistent with GPR120 receptor activity, but oleic acid and palmitic acid attenuated the depression of cAMP production caused by acetate in i.m. adipose tissue. Palmitic acid depressed cAMP production in s.c. adipose tissue, and increased cAMP production in i.m. adipose tissue (P < 0.05). Propionate had no effect on cAMP production in s.c. or i.m. adipose tissue. These results provide evidence for functional GPR43 receptors in i.m. adipose tissue and GPR120 receptors in s.c. adipose tissue, both of which would suppress lipolysis.  相似文献   

Diagnostic accuracy of optical coherence tomography for assessing surgical margins of canine soft tissue sarcomas in observers of different specialties     

Josephine A. Dornbusch  Laura E. Selmic  Pin‐Chieh Huang  Jonathan P. Samuelson  Eric M. McLaughlin  Vincent A. Wavreille  Jessica A. Ogden  Brittany Abrams  Alex Kalamaras  Eric Green  Eric T. Hostnik  Lincoln Every  Jason A. Fuerst  Ryan Jennings  Christopher Premanandan  Joshua N. Lorbach  Sarah C. Linn  Aneesh Alex  Janet E. Sorrells  Lingxiao Yang  Stephen A. Boppart 《Veterinary surgery : VS》2021,50(1):111-120

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Incisional complications after skin closure with n‐butyl cyanoacrylate or stainless‐steel skin staples in horses undergoing colic surgery     

Javier Martinez‐Lopez  James A. Brown  Stephen R. Werre 《Veterinary surgery : VS》2021,50(1):186-195

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Randomized controlled clinical study evaluating the efficacy and safety of intratumoral treatment of canine mast cell tumors with tigilanol tiglate (EBC‐46)     

Thomas R. De Ridder  Justine E. Campbell  Cheryl Burke‐Schwarz  David Clegg  Emily L. Elliot  Samuel Geller  Wendy Kozak  Stephen T. Pittenger  Jennifer B. Pruitt  Jocelyn Riehl  Julie White  Melissa L. Wiest  Chad M. Johannes  John Morton  Pamela D. Jones  Peter F. Schmidt  Victoria Gordon  Paul Reddell 《Journal of veterinary internal medicine / American College of Veterinary Internal Medicine》2021,35(1):415-429

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Clinical,pathologic, and toxicologic characterization of Salvia reflexa (lance-leaf sage) poisoning in cattle fed contaminated hay     

Kip E. Panter  Bryan L. Stegelmeier  Dale R. Gardner  Clinton A. Stonecipher  Stephen T. Lee  Don Kitchen  Adeline Brackett  Charlie Davis 《Journal of veterinary diagnostic investigation》2021,33(3):538

Salvia reflexa (lance-leaf sage)-contaminated alfalfa hay was fed to ~500 mixed-breed beef cattle. Within hours of exposure, nearly half of the cattle developed lethargy, anorexia, depression, and recumbency, followed by bellowing, colic, and death. Even though the uneaten contaminated hay was removed the first day, nearly 100 animals died within the first 48 h. Three of these cattle were examined postmortem, and tissues and hay samples were collected for microscopic and chemical analysis. Several days later, a smaller number of the clinically poisoned cattle developed neurologic disease with aberrant behavior, aggression, icterus, blindness, exhaustion, and death. A total of 165 cattle were fatally poisoned. Poisoned cattle had swollen, dark, mottled livers that had a prominent nutmeg-like lobular pattern on cut section. Histologically, there was severe centrilobular-to-panlobular hepatic necrosis with marked hepatocellular swelling, degeneration, and necrosis. The surviving cattle developed liver disease characterized by altered serum biochemical analyses and microscopic hepatocellular degeneration and necrosis. In subsequent biopsies and analysis, these lesions resolved within 6–7 mo. After confirming toxicity of the hay in cattle, goats, and mice, followed by a mouse bioassay–guided chemical fractionation process, Salvia reflexa was identified as the contaminant in the hay responsible for the hepatotoxicity. S. reflexa has not been reported previously to cause fatal hepatotoxicity in livestock in North America, to our knowledge.  相似文献