Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans     

Muegge BD  Kuczynski J  Knights D  Clemente JC  González A  Fontana L  Henrissat B  Knight R  Gordon JI 《Science (New York, N.Y.)》2011,332(6032):970-974

Coevolution of mammals and their gut microbiota has profoundly affected their radiation into myriad habitats. We used shotgun sequencing of microbial community DNA and targeted sequencing of bacterial 16S ribosomal RNA genes to gain an understanding of how microbial communities adapt to extremes of diet. We sampled fecal DNA from 33 mammalian species and 18 humans who kept detailed diet records, and we found that the adaptation of the microbiota to diet is similar across different mammalian lineages. Functional repertoires of microbiome genes, such as those encoding carbohydrate-active enzymes and proteases, can be predicted from bacterial species assemblages. These results illustrate the value of characterizing vertebrate gut microbiomes to understand host evolutionary histories at a supraorganismal level.  相似文献   

CO2 emissions: a piece of the pie     

Wigley TM 《Science (New York, N.Y.)》2007,316(5826):829-30; author reply 829-30

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Eco1-dependent cohesin acetylation during establishment of sister chromatid cohesion     

Rolef Ben-Shahar T  Heeger S  Lehane C  East P  Flynn H  Skehel M  Uhlmann F 《Science (New York, N.Y.)》2008,321(5888):563-566

Replicated chromosomes are held together by the chromosomal cohesin complex from the time of their synthesis in S phase onward. This requires the replication fork-associated acetyl transferase Eco1, but Eco1's mechanism of action is not known. We identified spontaneous suppressors of the thermosensitive eco1-1 allele in budding yeast. An acetylation-mimicking mutation of a conserved lysine in cohesin's Smc3 subunit makes Eco1 dispensable for cell growth, and we show that Smc3 is acetylated in an Eco1-dependent manner during DNA replication to promote sister chromatid cohesion. A second set of eco1-1 suppressors inactivate the budding yeast ortholog of the cohesin destabilizer Wapl. Our results indicate that Eco1 modifies cohesin to stabilize sister chromatid cohesion in parallel with a cohesion establishment reaction that is in principle Eco1-independent.  相似文献   

Activation of the cellular DNA damage response in the absence of DNA lesions   总被引：1，自引：0，他引：1  

Soutoglou E  Misteli T 《Science (New York, N.Y.)》2008,320(5882):1507-1510

The cellular DNA damage response (DDR) is initiated by the rapid recruitment of repair factors to the site of DNA damage to form a multiprotein repair complex. How the repair complex senses damaged DNA and then activates the DDR is not well understood. We show that prolonged binding of DNA repair factors to chromatin can elicit the DDR in an ATM (ataxia telangiectasia mutated)- and DNAPK (DNA-dependent protein kinase)-dependent manner in the absence of DNA damage. Targeting of single repair factors to chromatin revealed a hierarchy of protein interactions within the repair complex and suggests amplification of the damage signal. We conclude that activation of the DDR does not require DNA damage and stable association of repair factors with chromatin is likely a critical step in triggering, amplifying, and maintaining the DDR signal.  相似文献   

Regular Production of Transgenic Wheat Mediated by Agrobacterium tumefaciens   总被引：4，自引：1，他引：4  

YE Xing-guo  Shirley Sato  XU Hui-jun  DU Li-Pu  Tom Clemente 《中国农业科学(英文版)》2002,1(3):239-244

Wheat is the number one crop both in acreage and total yield in the world. Therefore, it is very important to improve wheat by gene engineering techniques even though it belongs to the plants insensitive to gene transformation, especially to Agrobacterium-mediated transformation. Wheat immature embryos of 1.0-1.5mm in size, C58c1 of Agrobacterium strain harboring pPTN249, pPTN270, pPTN254, and pSIS-GFP respectively (all the vectors contain the aphA selectable gene driven by enhanced 35S promoter and a target gene controlled by ubi promoter or E35S promoter), AB medium for Agrobacterium activate culture, WCC medium for co-culture, were used in this study. The embryos with 4 days of pre-culture were transferred onto selection medium with 10mg/L geneticin, 50mg/L ticarcillin, 50mg/L vancomycin, and 50mg/L cefotaxine after 30 minutes of infection and 2 days of co-cultivation with Agrobacterium. Followed callus production,shoot regeneration on selection medium, 114 resistant plantlets were obtained from 10 transformation experiments of four genotypes. By nptⅡ ELISA (nptⅡ enzyme assay), PCR, Southern blot and leaf bleach,29 positive plants were identified from two genotypes of Bobwhite and Yanglmai 10, with an average transformation efficiency of 0.82 %. The result tested by Southern blot also showed that the transgenic plants with single- copy integration of target gene took 65.52% among total positive plants. The ELISA value of transgenic plant was also related to the copies of alien DNA integrating into wheat chromosomes, the transgenic plants with single copy integration giving higher ELISA value than the ones with 2 or 3 copies integration.  相似文献   

Crystal structure of the long-chain fatty acid transporter FadL     

van den Berg B  Black PN  Clemons WM  Rapoport TA 《Science (New York, N.Y.)》2004,304(5676):1506-1509

The mechanisms by which hydrophobic molecules, such as long-chain fatty acids, enter cells are poorly understood. In Gram-negative bacteria, the lipopolysaccharide layer in the outer membrane is an efficient barrier for fatty acids and aromatic hydrocarbons destined for biodegradation. We report crystal structures of the long-chain fatty acid transporter FadL from Escherichia coli at 2.6 and 2.8 angstrom resolution. FadL forms a 14-stranded beta barrel that is occluded by a central hatch domain. The structures suggest that hydrophobic compounds bind to multiple sites in FadL and use a transport mechanism that involves spontaneous conformational changes in the hatch.  相似文献   

Genome-sequencing anniversary. Genomics and clinical relevance     

Hudson T 《Science (New York, N.Y.)》2011,331(6017):547

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210th meeting of the American Astronomical Society. Black holes: galactic homebodies?     

Siegfried T 《Science (New York, N.Y.)》2007,316(5830):1420

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Molecular biology. Breaking the silence     

Owen-Hughes T  Bruno M 《Science (New York, N.Y.)》2004,303(5656):324-325

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Molecular mechanisms for the functionality of lubricant additives     

Mosey NJ  Müser MH  Woo TK 《Science (New York, N.Y.)》2005,307(5715):1612-1615

Wear limits the life-span of many mechanical devices with moving parts. To reduce wear, lubricants are frequently enriched with additives, such as zinc phosphates, that form protective films on rubbing surfaces. Using first-principles molecular dynamics simulations of films derived from commercial additives, we unraveled the molecular origin of how antiwear films can form, function, and dissipate energy. These effects originate from pressure-induced changes in the coordination number of atoms acting as cross-linking agents to form chemically connected networks. The proposed mechanism explains a diverse body of experiments and promises to prove useful in the rational design of antiwear additives that operate on a wider range of surface materials, with reduced environmental side effects.  相似文献