Control charts applied to simulated sow herd datasets     

J. Krieter  J. Engler  K.-H. Tlle  H.H. Timm  E. Hohls 《Livestock Science》2009,121(2-3):281-287

Statistical control charts were used to detect process change in pig production. Two charts were tested to detect small deviations in production processes: the cumulative sum (CUSUM) control chart and the exponentially weighted moving average (EWMA) control chart. A Monte-Carlo simulation was used for developing an optimal design of the EWMA and the CUSUM charts. The traits piglets born in total and the return to oestrus rate were considered. Over a given time period, small shifts were purposely implemented to test the performance of the charts. The average time to signal (ATS) and false positive rate (FPR) were taken as classification parameters to evaluate the performance of the charts. All shifts in the number of piglets born in total were detected with CUSUM and EWMA control charts. The trait piglets born in total showed an ATS ranging from 1.3 (FPR = 33.5%) to 6.8 weeks (FPR = 1.2%) using the CUSUM chart. The EWMA chart presented an ATS which ranged between 2.0 (FPR = 14.9%) and 6.3 (FPR = 1.9%) weeks. The application of the CUSUM to the return to oestrus rate resulted in an ATS of 2.6 (FPR =  38.3%) to 15.6 weeks (FPR = 3.0%) and the EWMA chart produced a signal between 4.1 (FPR = 14.5%) and 16.4 weeks (FPR = 1.4%). Both charts appear to be useful tools for tracking commercial swine farm processes and detecting emerging change in process performance.  相似文献   

Detection,characterization, and control of bovine viral diarrhea virus infection in a large commercial dairy herd     

Jeremy M. Schefers  James E. Collins  Sagar M. Goyal  Trevor R. Ames 《The Canadian veterinary journal. La revue veterinaire canadienne》2009,50(10):1075-1079

Detection, genetic characterization, and control of bovine viral diarrhea virus (BVDV) disease in a large commercial dairy herd is reported. Precolostral BVDV serum antibody was detected in 5.3% (12/226) of newborn calves before the test and removal of persistently infected (PI) animals and in 0.4% (2/450) of newborn calves after the removal of PI heifers.  相似文献   

Dr W J A Payne: an appreciation     

R Trevor Wilson 《Tropical animal health and production》2009,41(7):995-998

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Detection of transgenic and endogenous plant DNA in digesta and tissues of sheep and pigs fed Roundup Ready canola meal     

Sharma R  Damgaard D  Alexander TW  Dugan ME  Aalhus JL  Stanford K  McAllister TA 《Journal of agricultural and food chemistry》2006,54(5):1699-1709

The persistence of plant-derived recombinant DNA in sheep and pigs fed genetically modified (Roundup Ready) canola was assessed by PCR and Southern hybridization analysis of DNA extracted from digesta, gastrointestinal (GI) tract tissues, and visceral organs. Sheep (n = 11) and pigs (n = 36) were fed to slaughter on diets containing 6.5 or 15% Roundup Ready canola. Native plant DNA (high- and low-copy-number gene fragments) and the cp4 epsps transgene that encodes 5-enolpyruvyl shikimate-3-phosphate synthase were tracked in ruminal, abomasal, and large intestinal digesta and in tissue from the esophagus, rumen, abomasum, small and large intestine, liver, and kidney of sheep and in cecal content and tissue from the duodenum, cecum, liver, spleen, and kidney of pigs. High-copy chloroplast-specific DNA (a 520-bp fragment) was detected in all digesta samples, the majority (89-100%) of intestinal tissues, and at least one of each visceral organ sample (frequencies of 3-27%) from sheep and swine. Low-copy rubisco fragments (186- and 540-bp sequences from the small subunit) were present at slightly lower, variable frequencies in digesta (18-82%) and intestinal tissues (9-27% of ovine and 17-25% of porcine samples) and infrequently in visceral organs (1 of 88 ovine samples; 3 of 216 porcine samples). Each of the five cp4 epsps transgene fragments (179-527 bp) surveyed was present in at least 27% of ovine large intestinal content samples (maximum = 64%) and at least 33% of porcine cecal content samples (maximum = 75%). In sheep, transgene fragments were more common in intestinal digesta than in ruminal or abomasal content. Transgene fragments were detected in 0 (esophagus) to 3 (large intestine) GI tract tissues from the 11 sheep and in 0-10 of the duodenal and cecal tissues collected from 36 pigs. The feed-ingested recombinant DNA was not detected in visceral tissues (liver, kidney) of lambs or in the spleen from pigs. Of note, however, one liver and one kidney sample from the pigs (different animals) were positive for a 278-bp fragment of the transgenic cp4 epsps (denoted F3). Examination of genomic libraries from these tissues yielded no conclusive information regarding integration of the fragment into porcine DNA. This study confirms that feed-ingested DNA fragments (endogenous and transgenic) do survive to the terminal GI tract and that uptake into gut epithelial tissues does occur. A very low frequency of transmittance to visceral tissue was confirmed in pigs, but not in sheep. It is recognized that the low copy number of transgenes in GM feeds is a challenge to their detection in tissues, but there was no evidence to suggest that recombinant DNA would be processed in the gut in any manner different from endogenous feed-ingested genetic material.  相似文献   

Investigation of fungal development in maize kernels using NIR hyperspectral imaging and multivariate data analysis     

Paul J. Williams  Paul Geladi  Trevor J. Britz  Marena Manley 《Journal of Cereal Science》2012

Near infrared (NIR) hyperspectral imaging and hyperspectral image analysis were evaluated for their potential to track changes in fungal contamination on and fungal activity immediately under the surface of whole maize kernels (Zea mays L.) infected with Fusarium verticillioides. Hyperspectral images of clean and infected kernels were acquired using a SisuChema hyperspectral pushbroom imaging system with a spectral range of 1000–2498 nm at predetermined time intervals after infection. Background, bad pixels and shading of acquired absorbance images were removed using exploratory principal component analysis (PCA). When plotting PC4 against PC5, with percentage sum of squares (%SS) 0.49% and 0.34%, three distinct clusters were apparent in the score plot and this was associated with degree of infection. Loading line plots, with prominent peaks at 1900 nm and 2136 nm, confirmed that the source of variation was due to changes in starch and protein. Partial least squares (PLS) regression models, with time as the Y variable, were calculated and also indicated that changes over time were apparent. Variable importance plots (VIP) confirmed the peaks observed in the PCA loading line plots. More systematic future experiments are needed to confirm this, but it can already be concluded that early detection of fungal contamination and activity is possible.  相似文献   

Reinventing residual reserves in the sea: are we favouring ease of establishment over need for protection?          下载免费PDF全文

Rodolphe Devillers  Robert L. Pressey  Alana Grech  John N. Kittinger  Graham J. Edgar  Trevor Ward  Reg Watson 《水产资源保护:海洋与淡水生态系统》2015,25(4):480-504

Carotenoid Content of Commonly Consumed Herbs and Assessment of Their Bioaccessibility Using an In Vitro Digestion Model     

Trevor Daly  Marvin A. Jiwan  Nora M. O’Brien  S. Aisling Aherne 《Plant foods for human nutrition (Dordrecht, Netherlands)》2010,65(2):164-169

Herbs are a rich source of bioactive phytochemicals such as carotenoids, which are known to exert various positive biological effects. However, there is very limited information in the literature regarding the content and bioavailability of carotenoids from commonly consumed herbs. Therefore, the objectives of the present study were first, to determine the carotenoid content of eight herbs namely basil (Ocimum basilicum), coriander (Coriandrum sativum), dill (Anethum graveolens), mint (Metha L.), parsley (Petroselinum crispum), rosemary (Rosmarinus officinalis), sage (Salvia officinalis), and tarragon (Artemisia dracunculus L.); and second, to assess carotenoid bioaccessibility from these herbs using a simulated human in vitro digestion model. Carotenoid bioaccessibility is defined as the amount of carotenoids transferred to micelles after digestion when compared with the original amount present in the food. The content of individual carotenoids varied significantly among the herbs tested. Carotenoid bioaccessibility varied from 0 to 42.8%. Basil and coriander, and their respective micelles, contained the highest levels of β-carotene, β-cryptoxanthin, and lutein + zeaxanthin. Our findings show that herbs are rich sources of carotenoids and that these foods can significantly contribute to the intake of bioaccessible carotenoids.  相似文献   

Fetal and adult hematopoietic stem cells give rise to distinct T cell lineages in humans     

Mold JE  Venkatasubrahmanyam S  Burt TD  Michaëlsson J  Rivera JM  Galkina SA  Weinberg K  Stoddart CA  McCune JM 《Science (New York, N.Y.)》2010,330(6011):1695-1699

Although the mammalian immune system is generally thought to develop in a linear fashion, findings in avian and murine species argue instead for the developmentally ordered appearance (or "layering") of distinct hematopoietic stem cells (HSCs) that give rise to distinct lymphocyte lineages at different stages of development. Here we provide evidence of an analogous layered immune system in humans. Our results suggest that fetal and adult T cells are distinct populations that arise from different populations of HSCs that are present at different stages of development. We also provide evidence that the fetal T cell lineage is biased toward immune tolerance. These observations offer a mechanistic explanation for the tolerogenic properties of the developing fetus and for variable degrees of immune responsiveness at birth.  相似文献   

Conversion of native forest to exotic Pinus radiata plantation: Response of understorey plant composition using a plant functional trait approach     

Trevor L. Meers  Sabine Kasel  Tina L. Bell  Neal J. Enright 《Forest Ecology and Management》2010

This study aimed to determine the response of native plant species to changed growing conditions, especially increased shade, following establishment of exotic Pinus radiata plantation on cleared native eucalypt forest. In the Northern Hemisphere, species tolerant to shading are typically herbaceous perennials, with large seeds, no obvious mechanism of seed dispersal, and spread by clonal means. We investigated whether life form, mode of seed dispersal, leaf area, specific leaf area (SLA), nutrient uptake strategy, seed mass, fire response, plant height, and clonal spread differed between understorey species of pine plantation and native forest. Further, we asked whether plant functional traits that confer tolerance to stress through shading differ from those in other floras. The study was conducted on the Delatite Peninsula in north-eastern Victoria, Australia. Vegetation of adjacent native forest and pine plantation were surveyed using eight 7 m × 7 m plots per site, randomly located within five paired sites. Differences in plant traits between land-use types were tested by Non-metric Multi-dimensional Scaling (NMDS), analysis of similarity (ANOSIM) and paired t-tests. Cluster analysis of the nine plant traits was used to define emergent groups, with differences between land-use types examined by ANOSIM and indicator species analysis. There was a significant change in the composition of understorey vegetation following conversion to pine plantation that included a decline in the richness of native species. NMDS of plant attributes showed a clear separation of native forest from pine plantation with land use strongly correlated in ordination space (r² = 0.611). Cluster analysis produced seven emergent groups of plant functional traits for 78 identified plant species. Phanerophytes split into two groups (myrmecochorous trees and shrubs; myrmecochorous shrubs), perennial herbs into four groups (upright herbs, myrmecochorous herbs, barochorous herbs, flat rosette herbs) with one group representing therophytes and anemochorous perennials. Perennial herbs with intermediate SLA and clonal spread were tolerant of the shaded conditions in pine plantation while the two groups of phanerophytes and the myrmecochorous herbs were largely excluded. Shared traits of excluded emergent groups included those that provided an over-riding adaptation to mineral nutrient stress, including myrmecochory, low SLA, ectomycorrhizal and ericoid mycorrhizal associations and N₂-fixation. These plant traits could not provide tolerance to stress through shading, which is better explained by the open canopied nature of the native forest.  相似文献   

Correlates of lake use by breeding common scoters in Scotland          下载免费PDF全文

Mark H. Hancock  Hannah J. Robson  Trevor D. Smith  Andy Douse 《水产资源保护:海洋与淡水生态系统》2016,26(4):749-767

1. Many populations of sea‐ducks, which typically winter at sea but breed on fresh water, are declining. Numbers of common scoters Melanitta nigra (L.) breeding in Scotland halved between 1995 and 2007, despite most breeding sites having special conservation status. To identify potential conservation measures, a 3‐year study was conducted, investigating correlates of lake use by scoters. 2. At 26 scoter breeding lakes, food abundance (macroinvertebrates) and foraging habitats (substrates, water depth) were measured, and their associations with scoter lake use explored using multi‐model inference. Correlates of macroinvertebrate abundance (water quality, fish abundance) were also investigated. 3. Averaged over 3 years (2009–2011), these lakes held 26.7 (SE 6.3) females, around half the Scottish breeding population. Scoters occurred more often at lakes having abundant large‐bodied invertebrates and extensive shallow water. Lakes where the average weight of the largest invertebrate in each sample exceeded 4 mg had 9.2 times (females) or 27 times (broods) more scoter records than other lakes. Lakes where water depths (10 m from the shore) averaged less than 1.3 m had 2.5 times (females) or 12 times (broods) more scoter records than other lakes. 4. The abundance of large‐bodied invertebrates was greater where small fish species (mostly three‐spined sticklebacks Gasterosteus aculeatus) were more common and brown trout Salmo trutta were scarcer. 5. Results suggest two approaches to scoter conservation. At lakes used for hydro‐electricity generation, water level regimes that provide extensive shallow water should be tested to see if these benefit scoters. At lakes used for trout fishing, trout reduction by increased angling should be trialled, to see if this increases large‐invertebrate abundance and scoter use. Copyright © 2015 John Wiley & Sons, Ltd.  相似文献