Comparative study of methods for DNA preparation from olive oil samples to identify cultivar SSR alleles in commercial oil samples: possible forensic applications     

Breton C  Claux D  Metton I  Skorski G  Bervillé A 《Journal of agricultural and food chemistry》2004,52(3):531-537

Virgin olive oil is made from diverse cultivars either mixed or single. Those ensure different tastes and typicity, and these may be also enhanced by the region of production of cultivars. The different olive oil labels correspond to their chemical composition and acidity. Labels also may correspond to a protected origin indication, and thus, such oils contain a given composition in cultivars. To verify the main cultivars used at the source of an olive oil sample, our method is based on DNA technology. DNA is present in all olive oil samples and even in refined oil, but the quantity may depend on the oil processing technology and oil conservation conditions. Thus, several supports were used to retain DNA checking different techniques (silica extraction, hydroxyapatite, magnetic beads, and spun column) to prepare DNA from variable amounts of oil. At this stage, it was usable for amplification through PCR technology and especially with the magnetic beads, and further purification processes were checked. Finally, the final method used magnetic beads. DNA is released from beads in a buffer. Once purified, we showed that it did not contain compounds inhibiting PCR amplification using SSR primers. Aliquot dilution fractions of this solution were successfully routinely used through PCR with different SSR primer sets. This enables confident detection of eventual alien alleles in oil samples. First applied to virgin oil samples of known composition, either single cultivars or mixtures of them, the method was verified working on commercial virgin oil samples using bottles bought in supermarkets. Last, we defined a protocol starting from 2 x 40 mL virgin olive oil, and DNA was prepared routinely in about 5 h. It was convenient to genotype together several loci per sample to check whether alleles were in accordance with those of expected cultivars. Thus, forensic applications of our method are expected. However, the method needs further improvement to work on all oil samples.  相似文献   

Genotypic variation of resistance to southern stem rot of Jerusalem artichoke caused by Sclerotium rolfsii   总被引：1，自引：0，他引：1  

Rattikarn Sennoi  Sanun Jogloy  Weerasak Saksirirat  Thawan Kesmala  Aran Patanothai 《Euphytica》2013,190(3):415-424

Southern stem rot caused by Sclerotium rolfsii is a significant problem of Jerusalem artichoke (Helianthus tuberosus L.) production in Thailand. Resistant varieties are not available. The objective of this study was to investigate genetic variability of Jerusalem artichoke genotypes for resistance to stem rot caused by S. rolfsii. Ninety-one Jerusalem artichoke genotypes were evaluated under greenhouse conditions. Traits evaluated included disease score, lesion length, days to permanent wilting, plant height, shoot dry weight, and root dry weight index. Number of days from inoculation until permanent wilting was the only trait with statistically significant differences among genotypes. Based on this trait, genotypes were categorized into two distinct groups: resistant and susceptible. Genotypes that consistently expressed relative resistance to S. rolfsii included HEL 280, HEL 278, HEL 293 and JA 98. These genotypes may be useful to plant breeders as sources of germplasm for incorporating resistance to S. rolfsii into Jerusalem artichoke.  相似文献   

Predicting Rice Yield Under Salinity Stress Using K/Na Ratio Variable in Plant Tissue     

Valère Cesse Mel  Vincent Boubié Bado  Saliou Ndiaye  Koffi Djaman  Delphine Aissata Bama Nati  Baboucarr Manneh 《Communications in Soil Science and Plant Analysis》2019,50(11):1321-1329

Estimation of yield reduction in crop caused by the salinity stress is mostly based on variations of soil electrical conductivity and the severity of water stress. Crop response curves to salinity were developed without considering ion toxicity and nutritional imbalance in the plant. The objective of this study was to explore the possibility of using the ratio of the concentration of potassium by sodium in rice leaf (leaf-K/Na) to predict yield under the salinity stress. The rice (Oryza sativa L.) yield under fresh and saline condition and the leaf-K/Na related database was created. Data were collected from consecutive three seasons of a field experiment in the Africa Rice Center experimental farm in Senegal (16° 11? N, 16° 15?W). We studied the relationship between the relative yield (Y_r), a ratio of yield under the salinity stress to the potential yield and the leaf-K/Na (x). Furthermore, we did regression analyses and F-test to determine the best fitting function. Results indicate that the exponential function [i.e. Y_r = 100 exp (-b x)] was the best fitting model with the lowest root mean square error (9.683) and the highest R² value (0.90). Example applications on independent data from published papers showed relatively good predictions, suggesting that the model can be used to predict rice yield in saline soils.  相似文献   

Use of midazolam in combination with medetomidine for premedication in healthy dogs     

Delphine Le Chevallier  Louisa Slingsby  Jo Murrell 《Veterinary anaesthesia and analgesia》2019,46(1):74-78

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Evaluation of a multi‐agent chemotherapy protocol combining dexamethasone,melphalan, actinomycin D,and cytarabine for the treatment of resistant canine non‐Hodgkin high‐grade lymphomas: a single centre's experience     

Katherine Smallwood  Jean‐Benoit Tanis  Iain A. Grant  Laura Blackwood  David R. Killick  Isabel Amores‐Fuster  James Elliott  Aran Mas  Aaron Harper  Mary Marrington  Riccardo Finotello 《Veterinary and comparative oncology》2019,17(2):165-173

The DMAC protocol (dexamethasone, melphalan, actinomycin‐D, cytarabine) has been evaluated in American studies for the treatment of relapsed canine lymphoma, comparing similarly to other rescue protocols. The aim of this study was to evaluate efficacy and toxicity of DMAC, in a larger UK cohort of resistant canine lymphomas. Medical records of dogs with resistant non‐Hodgkin high‐grade lymphomas that received DMAC as a rescue protocol were reviewed from 2007 to 2017. Response, time from initiation to discontinuation (TTD) and toxicity (Veterinary Cooperative Oncology Group criteria) were assessed. One hundred dogs were included; 86 received CEOP (modified CHOP including epirubicin) as first‐line treatment. Thirty‐five dogs (35%) responded: 21 complete responders (CRs) and 14 partial responders (PRs). Responders had significantly longer TTD (P < 0.001) compared with non‐responders: 62 days (range 28‐952) for CR vs 32 days (range 20‐70) for PR. Six CR received more than six cycles of DMAC (range 7‐36 cycles) and experienced a longer TTD (median 508, range 126‐952 days). Thrombocytopenia occurred in 45% (24 grade 1‐2, 21 grade 3‐4) and neutropenia in 36% of cases (29 grade 1‐2, 7 grade 3‐4). Gastrointestinal toxicity occurred in 42% of dogs (40 grade 1‐2, 2 grade 3‐4). Owing to chemotherapy toxicity, treatment was discontinued in five, and hospitalization required in six cases. In this study, response to DMAC was lower and of generally shorter duration than previously reported. Toxicity was high, but infrequently led to hospitalization or discontinuation of treatment.  相似文献   

A longitudinal study of seroprevalence and seroconversion of Neospora caninum infection in dairy cattle in northeast Thailand     

Chanlun A  Emanuelson U  Frössling J  Aiumlamai S  Björkman C 《Veterinary parasitology》2007,146(3-4):242-248

A long-term study was carried out in 11 dairy herds in the Khon Kaen province of northeast Thailand between August 2001 and November 2004. The objective was to investigate seroprevalence dynamics of Neospora caninum infection in the herds and to demonstrate patterns of seroconversion in individual cattle. Each herd was visited once a year, in total four times, and sera from cattle > 3 months of age and farm dogs as well as a sample from the bulk milk were collected. All samples were analysed for presence of specific antibodies by an N. caninum iscom ELISA. The overall percentage of antibody-positive cattle was constant and varied only between 10 and 13% over the 4 years, but the variation in within-herd seroprevalence between herds was substantial. Two herds had > or = 20% seropositive animals at all samplings and consistently high bulk milk OD, whereas two herds had no seropositive animal at the last two samplings and low bulk milk OD. Five herds had a decreasing trend of within-herd seroprevalence, whereas the remaining six herds had a higher portion of test-positive individuals at the end of the study. A total of 424 individuals were sampled more than once; 344 (81%) and 32 (8%) were consistently antibody-negative and antibody-positive, respectively. The proportions of animals that changed from being seronegative to seropositive and from being seropositive to seronegative between the years were 3.9-4.6% and 19-39%, respectively. Apparent vertical and horizontal transmission rates were 58% (95% CI; 44-71%) and 5% (95% CI; 3-7%), respectively. In conclusion, the overall percentage of N. caninum antibody-positive cattle was constant over the years, but the within-herd seroprevalence varied substantially between the herds. Seroconversions were likely to occur in individual cattle although most animals had consistent serological status throughout the study.  相似文献   

RhizoTubes as a new tool for high throughput imaging of plant root development and architecture: test,comparison with pot grown plants and validation     

Christian?Jeudy  Marielle?Adrian  Christophe?Baussard  Céline?Bernard  Eric?Bernaud  Virginie?Bourion  Hughes?Busset  Lloren??Cabrera-Bosquet  Frédéric?Cointault  Simeng?Han  Mickael?Lamboeuf  Delphine?Moreau  Barbara?Pivato  Marion?Prudent  Sophie?Trouvelot  Hoai?Nam?Truong  Vanessa?Vernoud  Anne-Sophie?Voisin  Daniel?Wipf  Christophe?SalonEmail author 《Plant methods》2016,12(1):31

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Effect of <Emphasis Type="Italic">Metarhizium guizhouense</Emphasis> infection on mating competition and mate choice of <Emphasis Type="Italic">Bactrocera latifrons</Emphasis> (Diptera: Tephritidae)     

Narit Thaochan  Aran Ngampongsai 《Phytoparasitica》2018,46(4):459-469

Metarhizium guizhouense PSUM02 treated males of Bactrocera latifrons were investigated for the mating competition among males and mating choice by female flies to develop an auto-dissemination for the control of B. latifrons. In the present study, on day 1–4 of experiment, M. guizhouense–treated male flies were equally competitive with the normal male flies as we did not observe any differences in mating by treated and normal male flies of B. latifrons. Further, mating competitiveness were found low in treated adult male B. latifrons than normal male B. latifrons from 5th days of treatment until death. Kaplan-Meier survival analysis of treated male flies gave average survival times (AST) of 4.3?±?0.1 days, while the healthy female and male flies in the same cage showed AST of 9.3?±?0.3 and 8.3?±?0.4 days, respectively. The AST of untreated flies in control experiment ranged from 14.2–14.5 days. In mating preference experiment, M. guizhouense–treated male flies were chosen by virgin female than gravid female flies for mating. The treated male flies caused mortality in both virgin and gravid female flies in the same cage with AST of 4.4?±?0.1, 5.6?±?0.1 and 7.4?±?0.2 days, respectively, while untreated flies showed AST ranged from 13.9–14.3 days in control. The treated male flies could transmit the fungus infection to both untreated female and male flies as well as in virgin and gravid female flies by mating and contact. Our experiments showed the potentiality of M. guizhouense PSUM02 in management of B. latifrons by auto-dissemination with treated male flies, which transmit the fungus to a healthy population to reduce insect pest infestations.  相似文献   

Cardinal temperatures variability within a tropical japonica rice diversity panel     

Lauriane Rouan  Alain Audebert  Delphine Luquet  Sandrine Roques  Audrey Dardou  Eric Gozé 《Plant Production Science》2018,21(3):256-265

Air temperature is one of the most critical climatic factors controlling rice growth, development, and production in current and future climatic scenarii predicting increasingly frequent situations of extreme and/or fluctuating temperatures. With its large spectrum of geographical origins and cropping areas, one can credit tropical japonica rice subspecies of a probable genetic diversity of its response to air temperature, which is of major interest for the breeding of better adapted rice varieties. A panel of 195 rice accessions (175 japonica plus 20 reference cultivars) was studied in controlled environment to estimate cardinal (base, optimum, and maximum) temperatures based on the monitoring of the elongation rate (LERmax) of the sixth leaf on the main stem in response to six fixed thermal treatments ranging from 16 to 35 °C. A dedicated statistical framework was elaborated for estimating LERmax, cardinal temperature and related uncertainties. Developed statistical framework enhanced the precision of cardinal temperatures estimated compared to previously reported methods, especially for base temperature. Maximum temperature was trickier to estimate and will require further studies. A significant genotypic variability for base and optimal temperature was pointed out, suggesting tropical japonica subspecies represents a relevant genetic pool to breed for rice genotypes adapted to various thermal situations. These results also suggested that using genotype-dependent cardinal temperature values should enhance the way crop growth models account for genotype?×?environment interactions hence their predictive value in current and future climatic conditions.  相似文献   

Floristic and ecological differences between recent and ancient forests growing on non-acidic soils     

Delphine Sciama  Laurent Augusto  Jean-Luc Dupouey  Maya Gonzalez  Concepción Moares Domínguez 《Forest Ecology and Management》2009

The aim of this work was to investigate differences in soil chemistry and understory composition between recent forests (sites afforested in the last 170 years) and ancient forests growing on non-acidic soils. The study was carried out on hardwood forests at moderate elevation (400–600 m asl) in the Jura Mountains (N.E. France) on four main pedological substrates with different characteristics. The floristic composition of 127 stands from recent forests (n = 65) or ancient forests (n = 62) was surveyed. Some functional traits and the Ellenberg indicator values of the surveyed species were recorded. In addition, the topsoil from 30 stands was analysed. The composition of the flora was analysed by Detrended Correspondence Analysis and the species which were typical of one class of forest age were identified using a chi-square (χ²) test. The difference between forest classes for plant traits, their indicator values, or soil chemistry was tested using the generalized linear model and Bonferroni t-tests (or Kruskall–Wallis tests). The floristic composition of the ancient forests was significantly different from that of the recent forests and was characterized by a high occurrence of shrub species in recent forests. These differences were associated with higher specific leaf area, low-range seeds dispersal, and some life forms like geophytes. There was no clear difference in soil chemistry between the two classes of forests, except for δ¹⁵N values. The weakness of the difference in the soil between ancient and recent forests suggested that changes in soil chemistry caused by a former agricultural land use were not responsible for the differences in understory composition recorded. The differences in functional traits between the two forest classes supported this conclusion. We finally concluded that (i) past land use modifies the vegetation composition of current forests, even on neutral soils and that (ii) in our context, biological filters were probably responsible for these changes.  相似文献