Genome-wide association study for spot blotch resistance in Afghan wheat germplasm     

Naresh K. Bainsla  Rahul M. Phuke  Xinyao He  Vikas Gupta  Santosh K. Bishnoi  Rajiv K. Sharma  Najibeh Ataei  Susanne Dreisigacker  Philomin Juliana  Pawan K. Singh 《Plant pathology》2020,69(6):1161-1171

Spot blotch (SB), caused by Bipolaris sorokiniana, is a devastating disease of wheat globally, especially in South Asia and South America. Understanding the genetics of resistance to SB is important for developing breeding strategies to improve resistance. A panel of 301 genotypes from Afghanistan was phenotyped over two crop seasons using a mixture of virulent B. sorokiniana isolates and genotyped using DArTSeq to obtain genome-wide markers. Fifty genotypes (16.6%) showed disease scores less than the resistant control. Principal component analysis using the genotypic data clustered the genotypes into five different groups. Among models used for genome-wide association mapping, the multilocus mixed model, and fixed and random model circulating probability unification algorithms were most effective in identifying significant marker-trait associations (MTA). Twenty-five MTAs at p ≤ .001 were identified on chromosomes 1A, 1B, 1D, 2B, 2D, 3A, 3B, 4A, 5A, 5B, 6A, 7A, and 7D, indicating the quantitative nature of resistance to SB. Phenotypic variation explained by these markers ranged from 2.0% to 17.7%, and genomic regions on the chromosomes 1D, 2D, 3A, 3B, 4A, 5A, and 5B coincided with loci identified in previous studies. Three single nucleotide polymorphism (SNP) markers on chromosomes 1B (SNP 1113207) and 5A (SNPs 5411867 and 998276) were significant in both crop seasons as well as in the combined analysis across seasons. Marker 5411867 is close to Vrn-A1, shown to be associated with SB in previous studies. Furthermore, among known SB resistance genes, Sb2 on chromosome 5B was predicted to be significant in this panel.  相似文献   

Geostatistical and fuzzy clustering approach for delineation of site-specific management zones and yield-limiting factors in irrigated hot arid environment of India     

Moharana  P. C.  Jena  R. K.  Pradhan  U. K.  Nogiya  M.  Tailor  B. L.  Singh  R. S.  Singh  S. K. 《Precision Agriculture》2020,21(2):426-448

Precision Agriculture - Delineation of management zones (MZs) are needed to manage fields in order to maximize economic return, minimize environmental impact, and improve soil and crop management....  相似文献   

Agroforestry techniques for the rehabilitation of degraded salt-affected lands in India     

G. Singh  N. T. Singh  I. P. Abrol 《Land Degradation \u0026amp; Development》1994,5(3):223-242

The development of appropriate technologies for the judicious use of India's 8.11 million ha of salt-affected lands would give increased food, fodder and fuelwood production. A sizeable portion of the salt-affected lands of the Indo-Gangetic plain have been reclaimed through chemical amendments and are being commercially used for arable farming. However, large areas of salt-affected common lands, village and government lands and waste lands near cities, along railway tracks and roads do not have any productive use. Owing to their sparse vegetative cover such lands are vulnerable to further degradation and can be a source of runoff causing floods, especially where cows congregate. Research at the Central Soil Salinity Research Institute, Karnal has generated agroforestry techniques which could enable the economic exploitation of such marginal lands. This paper deals with various aspects of these techniques, which have been applied to over 50 000 ha by 1994. Based on eight to ten years of growth and biomass figures, the most salt-tolerant woody species identified were: Prosopis juliflora, Acacia nilotica, Casuarina equisetifolia, Tamarix articulata, Leptochloa fusca (a palatable forage grass which was found to be a promising primary colonizer of salt lands). Agronomic practices for the successful establishment of trees such as planting methods, amendment use, irrigation, spacing and lopping schedules are discussed. A Prosopis juliflora-leptochloa fusca silvipastoral model was found to be excellent for fuelwood and forage production and for the amelioration of high pH soils. This system, when followed for little more than four years, reclaims alkali soils to such an extent that normal agriculture crops such as Trifolium alexandrinum and T. resupinatum can be grown successfully. A ridge-trench system of tree planting was found to be helpful in alkali soils, the in situ rainwater conservation it led to assisting biomass production. Eucalyptus tereticornis, Populus deltoides and Tectona grandis based agroforestry were promising for reclaimed salt-affected lands. The short- and long-term effects of various tree plantations on the physicochemical properties of the soil and on soil-water relations are also discussed. Agroforestry options for the development of salt-affected lands found in various agroclimatic zones of India are explored.  相似文献   

Food consumption and digestive enzyme activity of Clarias batrachus exposed to various temperatures     

T. Ahmad  S.P. Singh  B.K. Khangembam  J.G. Sharma  R. Chakrabarti 《Aquaculture Nutrition》2014,20(3):265-272

The effect of temperature on the food consumption rate and the digestive enzyme activities of Clarias batrachus (80.60 ± 5.34 g) were evaluated. Fish were exposed to six different temperatures of 10, 15, 20, 25, 30 and 35 °C following an acclimation temperature of 25 °C. The rate of temperature change was 2 °C day^?1. Highest food consumption was recorded at 25 °C. It gradually reduced with decreasing water temperature. Food consumption rate was significantly (P < 0.05) lower at 10 °C compared with other treatments. Hence, 46.67, 8.20–23.58 and 1.02–6.15% reduced food consumptions were recorded in groups exposed at 10, 15 and 20 °C temperatures, respectively, compared with the 25 °C. The consumption rate was not affected in fish exposed at 30 and 35 °C. Total protease, trypsin and chymotrypsin activities were significantly (P < 0.05) higher in fish exposed at 25 °C compared with others. Lipase activity was significantly (P < 0.05) higher in fish exposed at 30 °C compared with others. Lowest enzyme activities were recorded at 10 °C. Water temperature below 25 °C affected the food consumption and digestive enzyme activities in fish that served as indicators of stress in fish.  相似文献   

Assessment of clonal fidelity of micropropagated gerbera plants by ISSR markers     

R. Bhatia  K.P. Singh  T. Jhang  T.R. Sharma 《Scientia Horticulturae》2009

True-to-type clonal fidelity is one of the most important pre-requisites in micropropagation of crop species. Genetic fidelity of in vitro raised 45 plants of gerbera (Gerbera jamesonii Bolus) derived from three different explants, viz., capitulum, leaf and shoot tips, was assessed by 32 ISSR markers, for their genetic stability. Out of 32 ISSR markers, 15 markers produced clear, distinct and scorable bands with an average of 5.47 bands per marker. The markers designed from AG motif amplified more number of bands. The markers anchored at 3′ ends produced high number of consistent bands than unanchored markers. Fifteen ISSR markers generated a total of 3773 bands, out of which 3770 were monomorphic among all the clones. The Jaccard's similarity coefficient revealed that out of 45 clones derived from different explants, 44 were grouped into a single large cluster alongwith the mother plant with a similarity coefficient value of 1.00, whereas one clone (C38) remained ungrouped. The clones derived from capitulum and shoot tip explants did not show any genetic variation, whereas, one of the leaf-derived clones exhibited some degree of variation.  相似文献   

Chitosan as a wall material for a microencapsulated delivery system for Macrobrachium rosenbergii (de Man) larvae     

Abdulaziz Anas  Rosamma Philip  & Isaac Sarojeni Bright Singh 《Aquaculture Research》2008,39(8):885-890

Chitosan has been widely accepted as a wall material for preparing microcapsules of various purposes in human medicine. The possibility of using chitosan as a wall material for microencapsulating nutrients and drugs for aquaculture purposes, specifically to Macrobrachium rosenbergii larvae was evaluated in this study. Two types of chitosan-coated microcapsules were prepared using either acetone (MEC-A) or NaOH (MEC-N) as the cross-linking agents. They were compared with a microbound diet relative to total leaching of nutrients and free amino acids (FAA). Among the microcapsules, MEC-N showed the lowest level of total leaching of nutrients (23.3%) during 5 h of immersion in seawater and released 65% FAA after 60 min. During laboratory trials, 75% larvae had accepted the MEC-N capsule. The results of the study suggest that chitosan can be used as a wall material for preparing microcapsules to deliver drugs and nutrients to M. rosenbergii larvae.  相似文献   

Water and nitrogen interaction on soil profile water extraction and ET in maize-wheat cropping system     

S. Lenka  A.K. Singh  N.K. Lenka 《Agricultural Water Management》2009,96(2):195-207

In the present study, water and nitrogen interaction on soil profile water extraction and evapo-transpiration (ET) was investigated taking a field experiment on a clay loam soil (Typic Haplustept) at the Indian Agricultural Research Institute, New Delhi with four consecutive crops (maize-wheat-maize-wheat) taken from July 2002 to April 2004. Three levels of water regime, namely W1, W2 and W3 referring to limited, medium and maximum irrigation were applied to each crop depending on the seasonal rainfall and the critical crop growth stage. The three water regimes were used with five nitrogen levels from T1 to T5, (T1, 0% N; T2, 75% N; T3, 100% N; T4, 150% N; T5, 100% N from organic source) in a split plot design for the four crops grown in sequence.Significant water and nitrogen interaction was observed for ET and soil profile water extraction pattern. Averaged across nitrogen treatments, ET in W2 and W3 were higher by 17 and 26%, respectively than W1 in maize 2002 and by 12 and 19% in maize 2003. In case of wheat, ET in W2 and W3 were higher by 27 and 58% than W1 in 1st crop and by 37 and 70% in 2nd crop. The effect of nitrogen regime, however, was prominent in both crops of maize and wheat, with significantly higher profile soil moisture depletion in T4 of each water regime. In all cases, lowest water depletion was observed in control plots receiving 0% N.In both crops, water extraction from surface 60 cm was highest in W3 followed by W2 and W1. In maize, the % extraction from 0 to 60 cm layer varied from 71 to 76% (W1), 70-79% (W2) and 75-82% (W3), whereas the values for wheat were 70-77, 72-79 and 75-83% for W1, W2 and W3, respectively. The 90-120 cm layer contributed only 3-14% to total water extraction in both the crops. From 90 to 120 cm layer, higher extraction was observed in W1 as compared to W3. The extraction values in W1, W2 and W3 in maize were 9-13, 7-14 and 3-9, respectively, whereas the corresponding values in wheat were 8-14, 5-12 and 3-7% for the three water regimes. Effect of nitrogen treatments on water extraction from deeper layer was observed with higher extraction in highest fertilized treatment (T4) as compared to other treatments.  相似文献   

Integrated effect of transplanting date, cultivar and irrigation on yield, water saving and water productivity of rice (Oryza sativa L.) in Indian Punjab: Field and simulation study     

S.K. Jalota  K.B. Singh  R.K. Gupta  Anil Sood  S. Panigrahy 《Agricultural Water Management》2009,96(7):1096-1104

Individual effect of different field scale management interventions for water saving in rice viz. changing date of transplanting, cultivar and irrigation schedule on yield, water saving and water productivity is well documented in the literature. However, little is known about their integrated effect. To study that, field experimentation and modeling approach was used. Field experiments were conducted for 2 years (2006 and 2007) at Punjab Agricultural University Farm, Ludhiana on a deep alluvial loamy sand Typic Ustipsamment soils developed under hyper-thermic regime. Treatments included three dates of transplanting (25 May, 10 June and 25 June), two cultivars (PR 118 inbred and RH 257 hybrid) and two irrigation schedules (2-days drainage period and at soil water suction of 16 kPa). The model used was CropSyst, which has already been calibrated for growth (periodic biomass and LAI) of rice and soil water content in two independent experiments. The main findings of the field and simulation studies conducted are compared to any individual, integrated management of transplanting date, cultivar and irrigation, sustained yield (6.3-7.5 t ha⁻¹) and saved substantial amount of water in rice. For example, with two management interventions, i.e. shifting of transplanting date to lower evaporative demand (from 5 May to 25 June) concomitant with growing of short duration hybrid variety (90 days from transplanting to harvest), the total real water saving (wet saving) through reduction in evapotranspiration (ET) was 140 mm, which was almost double than managing the single, i.e. 66 mm by shifting transplanting or 71 mm by growing short duration hybrid variety. Shifting the transplanting date saved water through reduction in soil water evaporation component while growing of short duration variety through reduction in both evaporation and transpiration components of water balance. Managing irrigation water schedule based on soil water suction of 16 kPa at 15-20 cm soil depth, compared to 2-day drainage, did not save water in real (wet saving), however, it resulted into apparent water saving (dry saving). The real crop water productivity (marketable yield/ET) was more by 17% in 25th June transplanted rice than 25th May, 23% in short duration variety than long and 2% in irrigation treatment of 16 kPa soil water suction than 2-days drainage. The corresponding values for the apparent crop water productivity (marketable yield/irrigation water applied) were 16, 20 and 50%, respectively. Pooled experimental data of 2 years showed that with managing irrigation scheduling based on soil water suction of 16 kPa at 15-20 cm soil depth, though 700 mm irrigation water was saved but the associated yield was reduced by 277 kg ha⁻¹.  相似文献   

Water production functions of wheat (Triticum aestivum L.) irrigated with saline and alkali waters using double-line source sprinkler system     

R.B. Singh  P.S. Minhas 《Agricultural Water Management》2009,96(5):736-744

Expected yield losses as a function of quality and quantity of water applied for irrigation are required to formulate guidelines for the effective utilisation of marginal quality waters. In an experiment conducted during 2004-2006, double-line source sprinklers were used to determine the separate and interactive effects of saline and alkali irrigation waters on wheat (Triticum aestivum L.). The study included three water qualities: groundwater (GW; electrical conductivity of water, ECw 3.5 dS m⁻¹; sodium adsorption ratio, SAR 9.8 mmol L⁻¹; residual sodium carbonate, RSC, nil) available at the site, and two synthesized waters, saline (SW; ECw 9.4 dS m⁻¹, SAR 10.3 mmol L⁻¹; RSC nil) and alkali (AW; ECw 3.7 dS m⁻¹, SAR 15.1 mmol L⁻¹; RSC 9.6 meq. L⁻¹). The depths of applied SW, AW, and GW per irrigation ranged from 0.7 to 3.5 cm; the depths of applied mixtures of GW with either SW (MSW) or AW (MAW) ranged from 3.2 to 5 cm. Thereby, the water applied for post-plant irrigations using either of GW, SW or AW ranged between 15.2 and 34.6 cm and 17.1 and 48.1 cm during 2004-2005 and 2005-2006, respectively and the range was 32.1-37.0 and 53.1-60.0 cm for MSW or MAW. Grain yields, when averaged for two years, ranged between 3.08 and 4.36 Mg ha⁻¹, 2.57 and 3.70 Mg ha⁻¹ and 2.73 and 3.74 Mg ha⁻¹ with various quantities of water applied using GW, SW and AW, respectively, and between 3.47 and 3.75 Mg ha⁻¹ and 3.63 and 3.77 Mg ha⁻¹ for MSW and MAW, respectively. The water production functions developed for the two sets of water quality treatments could be represented as: RY = 0.528 + 0.843(WA/OPE) − 0.359(WA/OPE)² − 0.027ECw + 0.44 × 10⁻²(WA/OPE) × ECw for SW (R² = 0.63); RY = 0.446 + 0.816(OPE/WA) − 0.326(WA/OPE)² − 0.0124RSC − 0.55 × 10⁻⁴(WA/OPE) × RSC for AW (R² = 0.56). Here, RY, WA and OPE are the relative yields in reference to the maximum yield obtained with GW, water applied for pre- and post-plant irrigations (cm), and open pan evaporation, respectively. Crop yield increased with increasing amount of applied water for all of the irrigation waters but the maximum yields as obtained with GW, could not be attained even with increased quantities of SW and AW. Increased frequency of irrigation with sprinklers reduced the rate of yield decline with increasing salinity in irrigation water. The sodium contents of plants increased with salinity/alkalinity of sprinkled waters as also with their quantities. Simultaneous decrease in potassium contents resulted in remarkable increase in Na:K ratio.  相似文献   

Development and characterization of a cell line TTCF from endangered mahseer Tor tor (Ham.)     

Yadav K  Lakra WS  Sharma J  Goswami M  Singh A 《Fish physiology and biochemistry》2012,38(4):1035-1045

Tor tor is an important game and food fish of India with a distribution throughout Asia from the trans-Himalayan region to the Mekong River basin to Malaysia, Pakistan, Bangladesh and Indonesia. A new cell line named TTCF was developed from the caudal fin of T. tor for the first time. The cell line was optimally maintained at 28°C in Leibovitz-15 (L-15) medium supplemented with 20% fetal bovine serum (FBS). The propagation of TTCF cells showed a high plating efficiency of 63.00%. The cytogenetic analysis revealed a diploid count of 100 chromosomes at passage 15, 30, 45 and 60 passages. The viability of the TTCF cell line was found to be 72% after 6 months of cryopreservation in liquid nitrogen (-196°C). The origin of the cell lines was confirmed by the amplification of 578- and 655-bp sequences of 16S rRNA and cytochrome oxidase subunit I (COI) genes of mitochondrial DNA (mtDNA) respectively. TTCF cells were successfully transfected with green fluorescent protein (GFP) reporter plasmids. Further, immunocytochemistry studies confirm its fibroblastic morphology of cells. Genotoxicity assessment of H?O? in TTCF cell line revealed the utility of TTCF cell line as in vitro model for aquatic toxicological studies.  相似文献