Detection of Mycobacterium avium subsp. paratuberculosis by buoyant density centrifugation, sequence capture PCR and dot blot hybridisation     

Halldórsdóttir S  Englund S  Nilsen SF  Olsaker I 《Veterinary microbiology》2002,87(4):327-340

Detection of Mycobacterium avium subsp. paratuberculosis (M. paratuberculosis) by polymerase chain reaction (PCR) is often hampered by the lack of efficient methods for sample treatment. We report a protocol for analysis of faecal samples based on buoyant density centrifugation in Percoll and IS900 sequence capture PCR combined with a dot blot assay for detection of low-grade infection of M. paratuberculosis. Serial dilutions of M. paratuberculosis genomic DNA and M. paratuberculosis bacteria were used to assess the sensitivity of the method. The final evaluation was performed with spiked faecal samples, which also were analysed by culture. The presence of PCR inhibitory substances in processed faecal samples was evaluated by including a PCR internal control. By using buoyant density centrifugation, sequence capture PCR, and dot blot hybridisation, we achieved a sensitivity of 10(3)CFU (colony forming units)/g of faeces. The detection limit by culture was assessed to 10(2)CFU/g of faeces. We conclude that the described protocol is a fast and sensitive alternative to bacterial culture of faecal samples.  相似文献   

VvGAI1 polymorphisms associate with variation for berry traits in grapevine     

Alba M. Vargas  Loïc Le Cunff  Patrice This  Javier Ibáñez  M. Teresa de Andrés 《Euphytica》2013,191(1):85-98

  相似文献   

Identification of relevant morphological, topological and geometrical variables to characterize the architecture of rose bushes in relation to plant shape     

Laurent Crespel  Monique Sigogne  Nicolas Donès  Daniel Relion  Philippe Morel 《Euphytica》2013,191(1):129-140

  相似文献   

A genetic map of an interspecific diploid pseudo testcross population of coffee   总被引：1，自引：0，他引：1  

Germán Ariel López Gartner  Susan R. McCouch  María Del Pilar Moncada 《Euphytica》2013,192(2):305-323

Coffee is globally one of the most important export crops and is a prominent part of the economy in more than 50 countries in Latin America, Africa and Asia. In Colombia, it has been the leading export commodity for more than a century. However, genetic research on coffee has been rather sparse and mainly focused on the two major cultivated species, Coffea arabica L. and C. canephora P., leaving unexplored the genetic potential in other species. In this study, an interspecific mapping population consisting of 101 F₁ hybrid plants from a cross between the diploid species C. liberica and C. eugenioides was evaluated for genetic segregation at 618 molecular marker loci. Of these, 168 SSRs and two ESTs exhibited polymorphic patterns that allowed segregation analysis and genetic linkage estimations. A genetic map consisting of 146 co-dominant loci and 11 predicted linkage groups was constructed using the mapping software JoinMap 3.0. The conjoined maternal/paternal map length is 798.68 cM, has an average saturation density of 6.01 cM/interval, and covers an estimated 66–86 % of the diploid coffee genome. Approximately 24 % of loci had null alleles, and 23.5 % exhibited segregation distortion. Knowledge derived from this study has important applications for quantitative trait locus analysis and marker-assisted selection in Colombian coffee breeding programs.  相似文献   

Effects of selection for color intensity on antioxidant capacity in maize (Zea mays L.)     

Víctor M. Rodríguez  Pilar Soengas  Arsenio Landa  Amando Ordás  Pedro Revilla 《Euphytica》2013,193(3):339-345

Maize kernels with diverse colors have pigments and other substances with antioxidant capacity that can be highly beneficial for human health. Our objectives were to analyze antioxidant capacity of the different maize kernel colors, to investigate if selection for color intensity increases antioxidant capacity and to check the effect of bakery processing on antioxidant capacity. Pigment content was directly related to antioxidant capacity in maize kernels and also to the hydrophilic fraction, while the lipophilic fraction was not related to antioxidant capacity. Visual selection for kernel color increased anthocyanin content from 0.55 to 1.13 μmol/g of fresh weight in one unique cycle of selection. The traditional method for making maize bread out of whole maize flour has not significant effects on pigment content or antioxidant capacity. Therefore, maize bread made out of black or purple maize provides significant amounts of antioxidant substances potentially beneficial for human health.  相似文献   

Thermally initiated solvent-free radical modification of beech (Fagus sylvatica) wood     

Mariusz Ł. Mamiński  Magdalena Król  Armando G. McDonald  David N. McIlroy  Ishwar B. Niraula  Joanna Czechowska  Paweł Parzuchowski 《Wood Science and Technology》2013,47(5):1019-1031

A procedure for rapidly modifying beech wood using a thermally initiated solvent-free grafting system was examined. In the modification, butyl acrylate and butyl methacrylate were used as vinyl monomers. Free radicals were generated from 2,2′-azobis(2-methylpropionitrile) or benzoyl peroxide at 103 and 180 °C by contact heating of the modified material. Chemical changes in the material were investigated by FTIR and X-ray photoelectron spectroscopies. The modification resulted in decreased surface wetting of the material manifested by increased water contact angles. The hardness of the resultant material decreased, while its color changed by the effect of temperature. It was shown that the approach allowed for efficient thermal-initiated modification of wood with rapid contact heating.  相似文献   

Date of pruning of Guazuma ulmifolia during the rainy season affects the availability, productivity and nutritional quality of forage during the dry season     

Eloisa Ortega-Vargas  Silvia López-Ortiz  Juan Andrés Burgueño-Ferreira  W. Bruce Campbell  Jesús Jarillo-Rodríguez 《Agroforestry Systems》2013,87(4):917-927

Guazuma ulmifolia was experimentally pruned to determine when pruning should begin during the rainy season in order to extend the production of green tree-forage during the dry season. Three prunings (P-1, P-2, and P-3) were performed (5 weeks apart) during the rainy season (August, September, and October) and four forage harvests (C-a, C-b, C-c, and C-d) (3 weeks apart) took place during the dry season (February, March, and April). Over 2 years, forage biomass production was evaluated as total biomass (g dry matter tree^?1), biomass of the morphological components (leaves, stems, and dead matter), and nutritional quality (crude protein, fiber, lignin, and digestibility). Date of pruning affected the production of total biomass (P = 0.001) with the earliest pruning (P-1) yielding the greatest forage quantity, while stems (P = 0.022) and dead matter (P = 0.032) varied due to a year by pruning interaction. Total biomass, leaves, stems, and dead matter varied by the interaction between forage harvest and year for all four variables (P < 0.037). In both years, the largest forage harvest occurred in C-b (P < 0.05), leaf production was highest in C-a and C-b (P < 0.001), stem production was greatest in C-b (P = 0.013) and dead matter was highest in C-b and C-d (P = 0.002). Leaf crude protein ranged between 10 and 19 %, and the interaction of pruning by forage harvest by year was significant (P = 0.035). Digestibility, neutral and acid detergent fiber and lignin differed significantly because of the interaction between forage harvest and year (P < 0.005), with February showing the lowest values for fiber and the highest digestibility. The best time to prune G. ulmifolia is in August so that the young trees will produce more total biomass with a higher crude protein content. The most suitable moment for forage harvest is in February when the trees have more leaves with greater digestibility and less fiber.  相似文献   

Ectomycorrhizal inoculation with Pisolithus tinctorius increases the performance of Quercus suber L. (cork oak) nursery and field seedlings     

Mónica Sebastiana  Vanessa Tolentino Pereira  André Alcântara  Maria Salomé Pais  Anabela Bernardes Silva 《New Forests》2013,44(6):937-949

Mediterranean ecosystems are characterized by large arid areas where the patchy distribution of trees offers little protection against harsh climate conditions for seedling establishment. Climate change is predicted to result in an increase in these arid regions, with pronounced effects on vegetation. Production of seedlings with developed ectomycorrhizas is a promising strategy for minimizing the initial transplant shock, thereby increasing plant survival and growth during the first, most critical years of a plantation. One important species in the Mediterranean basin is Quercus suber (cork oak), which occurs, together with other evergreen oak species, in an agro-silvo-pastoral system that represents an example of sustainable land use in Europe. In this study, a Pisolithus tinctorius isolate was used for ectomycorrhizal colonization of cork oak nursery seedlings, and the effects on aboveground plant growth and leaf structural and physiological parameters were investigated. Ectomycorrhizal development resulted in a significant increase in leaf area, dry weight, nitrogen content, and photosynthetic pigments, and mycorrhizal plants showed a higher photosynthetic capacity and water use efficiency. Nursery-inoculated plants established in the field showed increased survival and growth during the first year after transplant. These results indicate a potential for further enhancing the use of mycorrhizal inoculation as a cultivation practice in forest nurseries. Considering the difficulty of soil restoration under limiting environmental conditions, nursery inoculation with ectomycorrhizal fungi can be an important advantage for improving the quality of seedling stock and its performance after out-planting in the field, benefiting the regeneration of arid regions and the reintroduction of inocula of ectomycorrhizal fungi into these areas.  相似文献   

Genetic aspects of age dynamics of a natural Picea abies (L.) Karst. population in the Białowieża Primeval Forest, Poland     

A. Wojnicka-Półtorak  W. Prus-Głowacki  K. Celiński  A. Korczyk 《New Forests》2013,44(6):811-825

We studied temporal changes in the genetic structure and diversity of a naturally regenerated Picea abies (L.) Karst. (Norway spruce) population in the Bia?owie?a Primeval Forest, Poland. The analysis included five age classes of trees: newly germinating seedlings (in laboratory conditions), seedlings up to 3 years old, young trees 4–10 years old, middle-aged trees 11–100 years old, and trees older than 100 years. We conducted genetic analyses of 26 allozyme loci using dormant buds from 405 individuals and 100 embryos. The results showed that the naturally regenerating Norway spruce population is genetically heterogeneous across the studied age classes. As determined by Chi squared tests, there were statistically significant differences in frequencies of alleles and genotypes as well as Wright’s index values (F) among the five age classes. The level of genetic differentiation (pairwise F_ST = 0.5–2.3 %) among the age class groups was equal to levels previously determined for various populations of this species. The Ewens-Watterson test for neutrality showed that one or two loci across different age classes of Norway spruce were affected by the selection process. The distinctiveness of embryo and seedling classes was confirmed by the number of detected alleles, the number of private alleles, the level of observed heterozygosity, and Wright’s index value. The results obtained in the present study indicate there are interesting dynamics of adaptation processes occurring in the natural age-diverse population of Norway spruce in the Bia?owie?a Primeval Forest.  相似文献   

Analysis of traditional poultry trader networks to improve risk-based surveillance     

Emilie Vallée  Agnès Waret-Szkuta  Hassen Chaka  Raphaël Duboz  Melesse Balcha  Flavie Goutard 《Veterinary journal (London, England : 1997)》2013,195(1):59-65

  相似文献