Isolation and characterization of microorganisms capable of hydrolysing the herbicide mefenacet     

Naoki Harada  Kazuhiro Takagi  Kunihiko Fujii 《Soil biology & biochemistry》2006,38(1):173-179

Three strains—Nocardioides sp. MFC-A, Rhodococcus rhodochrous MFC-B, and Stenotrophomonas sp. MFC-C—were newly isolated from rice soil or bark compost as microorganisms capable of cometabolically degrading mefenacet (2-benzothiazol-2-yloxy-N-methyl-acetanilide). Several other species belonging to the genera Nocardioides, Rhodococcus, and Stenotrophomonas were also capable of degrading mefenacet, suggesting that the ability is not specific to these isolates, but common at least in these genera. N-methylaniline and 2-benzothiazoloxy acetic acid were identified as the metabolites by liquid chromatography-mass spectrometry. Besides mefenacet, the isolates could degrade one or more other amide pesticides, such as flutolanil, mepronil, metolachlor, and pretilachlor. These results indicate that the strains Nocardioides sp. MFC-A, Rhodococcus rhodochrous MFC-B, and Stenotrophomonas sp. MFC-C degrade mefenacet via hydrolysis of the amide bond, but their substrate specificities differ.  相似文献   

Cycloamylose (cyclodextrin) glucanotransferase degrades intact granules of potato raw starch     

Yamamoto K  Zhang ZZ  Kobayashi S 《Journal of agricultural and food chemistry》2000,48(3):962-966

Cycloamylose (cyclodextrin) glucanotransferase (EC 2.4.1.19, CGTase) originated from Bacillus macerans degraded intact granules of potato raw starch and converted them into cyclodextrins (CDs). The degradation required sufficient stirring of starch-CGTase suspension. The morphology of the degraded starch granules was unique; that is, the inner part of the granules was observed by scanning electron microscope to be more susceptible to CGTase than the outer part. Effects of pH, temperature, starch concentration, and enzyme amount on CD production were studied.  相似文献   

Biotic and abiotic processes of nitrogen immobilization in the soil-residue interface     

Naoki Moritsuka  Junta Yanai  Takashi Kosaki 《Soil biology & biochemistry》2004,36(7):1141-1148

The interface between decaying plant residues and soil is a hotspot for microbial immobilization of soil inorganic N. Recent studies on forest and grassland soils have demonstrated that rapid abiotic immobilization of inorganic N is also induced by the presence of plant residues. We, therefore, examined (1) how N immobilization varies with distance from the soil-residue interface and (2) whether abiotic immobilization occurs in agricultural soils. Spatiotemporal changes of N immobilization in the soil-residue interface were evaluated using a box that enabled soil to be sampled in 2 mm increments from a 4 mm-thick residue compartment (RC). The RC was filled with paddy soil containing ground plant residue (rice bran, rice straw or beech leaves) uniformly at a rate of 50 g dry matter kg⁻¹. Soil in the surrounding compartments contained no residue. After aerobic incubation for 5, 15 and 30 days at 25 °C, soils in each compartment were analyzed. After 5 days, significant depletion of inorganic N occurred throughout a volume of soil extending at least 10 mm from the RC in all residue treatments, suggesting extensive diffusion of inorganic N towards the RC. The depletion within 10 mm of the RC amounted to 5.0, 4.3 and 3.4 mg for rice bran, rice straw and beech leaf treatment, respectively. On the other hand, microbial N had increased significantly in the RC of the rice bran and rice straw treatments (11 mg and 5.5 mg, respectively) and insignificantly in the RC of the beech leaf treatment (0.06 mg). This increase amounted to 221% (rice bran), 129% (rice straw) and 1.7% (beech leaves) of the decrease in inorganic N within 10 mm of each RC. Thereafter the rate of N mineralization exceeded that of immobilization, and inorganic N levels had recovered almost to their original level by 15 days (rice bran) and 30 days (rice straw and beech leaves). These results suggested the predominance of biotic immobilization in soil near rice bran and rice straw and of abiotic immobilization in soil near beech leaves. No significant increase in both microbial and soluble organic N in the vicinity of beech leaves after incubation for 5 days further suggested that the abiotic process was responsible for the transformation of inorganic N into the insoluble organic N.  相似文献   

Biological dinitrogen fixation and soil microbial biomass carbon as influenced by free-air carbon dioxide enrichment (FACE) at three levels of nitrogen fertilization in a paddy field   总被引：3，自引：0，他引：3  

Mozammel M. Hoque  Kazuyuki Inubushi  Shu Miura  Kazuhiko Kobayashi  Han-Yong Kim  Masumi Okada  Shingo Yabashi 《Biology and Fertility of Soils》2001,34(6):453-459

An experiment was conducted in an Andosol paddy field in Shizukuishi (Iwate Prefecture, Japan) to determine the effects of free-air CO₂ enrichment (FACE) on biological N₂-fixation activity and soil microbial biomass C at three levels of N application. Rice (Oryza sativa L. cv. Akitakomachi) plants were grown under ambient CO₂ or FACE (ambient +200 µmol mol^-1 CO₂) conditions throughout the growing season with each treatment having four replicated plots. Three levels of N fertilizer (high, standard and low; 15, 9 and 4 g N m^-2, respectively) were applied to examine the effect of different N availability under both CO₂ conditions. Soil samples were collected at four different times from upper and lower soil layers (0-1-cm and 1-10-cm soil depths, respectively) and analysed for biological N₂-fixation (BNF) activity and microbial biomass C (MBC) by the acetylene reduction and chloroform fumigation-extraction methods, respectively. The amounts of chlorophyll-type compounds (Chls), an index of algal growth, and soil available C were also determined. Compared to the ambient CO₂ treatment, the FACE treatment had significantly higher BNF activity in both the upper and lower soil layers at ripening only in low-N soil and at harvest at all three levels of N fertilization rates. MBC was significantly increased by FACE in both the upper and lower soil layers from the middle to later period of the growing season compared to the ambient CO₂ treatment. The FACE treatment increased the Chls in the upper soil layers at ripening only in low-N soil and at harvest at all three levels of N fertilization rates. The amount of soil available C was not significantly different between FACE and ambient CO₂ treatments in both the upper and lower soil layers throughout the cropping season. From these results it can be concluded that the FACE treatment had a significantly positive influence on BNF activity, MBC and Chls at different levels of N fertilization rates in paddy field during the cropping season.  相似文献   

Application of DNDC model to estimate N<Subscript>2</Subscript>O emissions from green tea fields in Japan     

Yurina Kwack  Kazuhiko Kobayashi 《Journal of Crop Science and Biotechnology》2011,14(2):157-162

Heavy doses of N fertilizers are commonly applied to green tea fields in Japan, and cause large amount of nitrate leaching in ground water and emission of ammonia and nitrous oxide (N₂O) to the atmosphere. The Denitrification and Decomposition (DNDC) model was tested against experimental data on N₂O emissions from the tea field in Nishio, Aichi, Japan. There were reasonable agreements between the simulated and measured values of N₂O emissions for this site. The model was then applied for estimating the environmental impacts as affected by farm management practices, climate change, and soil properties. The model results were assessed with respect to major indicators of agro-ecosystems including crop yield, soil organic carbon sequestration, nitrate leaching loss, and N₂O emission. The results indicated that use of compost significantly reduced nitrate leaching and N₂O emissions in comparison with N fertilizer. When soil pH and texture shifted to non-acidic and coarser soil, N₂O emission increased; and a change in temperature and precipitation affected N₂O emission, nitrate leaching, and SOC sequestration. This study thus revealed the biogeochemistry model as a powerful tool in addressing the complex efficacy of the alternative farm management practices in tea fields across various climate and soil conditions.  相似文献   

Prevention of acute liver failure in rats with reversibly immortalized human hepatocytes     

Kobayashi N  Fujiwara T  Westerman KA  Inoue Y  Sakaguchi M  Noguchi H  Miyazaki M  Cai J  Tanaka N  Fox IJ  Leboulch P 《Science (New York, N.Y.)》2000,287(5456):1258-1262

Because of a critical shortage in suitable organs, many patients with terminal liver disease die each year before liver transplantation can be performed. Transplantation of isolated hepatocytes has been proposed for the temporary metabolic support of patients awaiting liver transplantation or spontaneous reversion of their liver disease. A major limitation of this form of therapy is the present inability to isolate an adequate number of transplantable hepatocytes. A highly differentiated cell line, NKNT-3, was generated by retroviral transfer in normal primary adult human hepatocytes of an immortalizing gene that can be subsequently and completely excised by Cre/Lox site-specific recombination. When transplanted into the spleen of rats under transient immunosuppression, reversibly immortalized NKNT-3 cells provided life-saving metabolic support during acute liver failure induced by 90% hepatectomy.  相似文献   

A 49-kilodalton phosphoprotein in the Drosophila photoreceptor is an arrestin homolog   总被引：10，自引：0，他引：10  

T Yamada  Y Takeuchi  N Komori  H Kobayashi  Y Sakai  Y Hotta  H Matsumoto 《Science (New York, N.Y.)》1990,248(4954):483-486

The gene encoding the 49-kilodalton protein that undergoes light-induced phosphorylation in the Drosophila photoreceptor has been isolated and characterized. The encoded protein has 401 amino acid residues and a molecular mass of 44,972 daltons, and it shares approximately 42 percent amino acid sequence identity with arrestin (S-antigen), which has been proposed to quench the light-induced cascade of guanosine 3',5'-monophosphate hydrolysis in vertebrate photoreceptors. Unlike the 49-kilodalton protein, however, arrestin, which appears to bind to phosphorylated rhodopsin, has not itself been reported to undergo phosphorylation. In vitro, Ca2+ was the only agent found that would stimulate the phosphorylation of the 49-kilodalton protein. The phosphorylation of this arrestin-like protein in vivo may therefore be triggered by a Ca2+ signal that is likely to be regulated by light-activated phosphoinositide-specific phospholipase C.  相似文献   

Collection,mapping, and annotation of over 28,000 cDNA clones from japonica rice   总被引：2，自引：0，他引：2  

Rice Full-Length cDNA Consortium;National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team  Kikuchi S  Satoh K  Nagata T  Kawagashira N  Doi K  Kishimoto N  Yazaki J  Ishikawa M  Yamada H  Ooka H  Hotta I  Kojima K  Namiki T  Ohneda E  Yahagi W  Suzuki K  Li CJ  Ohtsuki K  Shishiki T;Foundation of Advancement of International Science Genome Sequencing & Analysis Group  Otomo Y  Murakami K  Iida Y  Sugano S  Fujimura T  Suzuki Y  Tsunoda Y  Kurosaki T  Kodama T  Masuda H  Kobayashi M  Xie Q  Lu M 《Science (New York, N.Y.)》2003,301(5631):376-379

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Drosophila Sex lethal gene initiates female development in germline progenitors   总被引：1，自引：0，他引：1  

Hashiyama K  Hayashi Y  Kobayashi S 《Science (New York, N.Y.)》2011,333(6044):885-888

Sex determination in the Drosophila germ line is regulated by both the sex of the surrounding soma and cell-autonomous cues. How primordial germ cells (PGCs) initiate sexual development via cell-autonomous mechanisms is unclear. Here, we demonstrate that, in Drosophila, the Sex lethal (Sxl) gene acts autonomously in PGCs to induce female development. Sxl is transiently expressed in PGCs during their migration to the gonads; this expression, which was detected only in XX PGCs, is necessary for PGCs to assume a female fate. Ectopic expression of Sxl in XY PGCs was sufficient to induce them to enter oogenesis and produce functional eggs when transplanted into an XX host. Our data provide powerful evidence that Sxl initiates female germline fate during sexual development.  相似文献   

Recombination regulation by transcription-induced cohesin dissociation in rDNA repeats     

Kobayashi T  Ganley AR 《Science (New York, N.Y.)》2005,309(5740):1581-1584

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