Monitoring managed forest structure at the compartment-level under different silvicultural heritages: An exploratory data analysis in Italy     

Claudia Becagli  Umberto Di Salvatore  Gianfranco Fabbio  Ferretti Fabrizio  Luca Salvati 《Journal of Sustainable Forestry》2013,32(3):234-250

ABSTRACT

The more and more diffused multifunctional role addressed nowadays to public forests, calls for targeted analysis aimed at highlighting the overall outcome of different practices implemented on the same forest compartment, according to the locally prevailing function. This study was carried out in four Italian beech forests across a latitudinal gradient representative of multiple management history, stand structure, and dominant stand age. We analyze forest structure at the compartment scale before and after silvicultural practices. We aim to explore relationships and similarities between 10 stand attributes (mensurational and structural variables) to identify relevant indicators for the monitoring and management of forest ecosystems. Results indicate changing patterns of correlation and similarity among mensurational variables following practice implementation. A sensitivity gradient to silvicultural practice was finally identified within the four sites investigated as a result of the diverging stand structure. Our approach suggests a way and provides an insight for the design of adaptive forestry management practices required to meet environmental targets, in addition to the already acknowledged supply of primary goods and services.  相似文献   

Relationship between inbreeding and milk production traits in two Italian dairy sheep breeds     

Alberto Cesarani  Salvatore Mastrangelo  Michele Congiu  Baldassare Portolano  Giustino Gaspa  Marco Tolone  Nicolò P. P. Macciotta 《Zeitschrift für Tierzüchtung und Züchtungsbiologie》2023,140(1):28-38

The effects of inbreeding in livestock species breeds have been well documented and they have a negative impact on profitability. The objective of this study was to evaluate the levels of inbreeding in Sarda (SAR, n = 785) and Valle del Belice (VdB, n = 473) dairy sheep breeds and their impact on milk production traits. Two inbreeding coefficients (F) were estimated: using pedigree (F_PED), or runs of homozygosity (ROH; F_ROH) at different minimum ROH lengths and different ROH classes. After the quality control, 38,779 single nucleotide polymorphisms remained for further analyses. A mixed-linear model was used to evaluate the impact of inbreeding coefficients on production traits within each breed. VdB showed higher inbreeding coefficients compared to SAR, with both breeds showing lower estimates as the minimum ROH length increased. Significant inbreeding depression was found only for milk yield, with a loss of around 7 g/day (for SAR) and 9 g/day (VdB) for a 1% increase of F_ROH. The present study confirms how the use of genomic information can be used to manage intra-breed diversity and to calculate the effects of inbreeding on phenotypic traits.  相似文献   

Standing in the canine precision medicine knowledge gap: Improving annotation of canine cancer genomic biomarkers through systematic comparative analysis of human cancer mutations in COSMIC     

Sharadha Sakthikumar  Salvatore Facista  Derick Whitley  Sara A. Byron  Zeeshan Ahmed  Manisha Warrier  Zhanyang Zhu  Esther Chon  Kathryn Banovich  David Haworth  William P. D. Hendricks  Guannan Wang 《Veterinary and comparative oncology》2023,21(3):482-491

The accrual of cancer mutation data and related functional and clinical associations have revolutionised human oncology, enabling the advancement of precision medicine and biomarker-guided clinical management. The catalogue of cancer mutations is also growing in canine cancers. However, without direct high-powered functional data in dogs, it remains challenging to interpret and utilise them in research and clinical settings. It is well-recognised that canine and human cancers share genetic, molecular and phenotypic similarities. Therefore, leveraging the massive wealth of human mutation data may help advance canine oncology. Here, we present a structured analysis of sequence conservation and conversion of human mutations to the canine genome through a ‘caninisation’ process. We applied this analysis to COSMIC, the Catalogue of Somatic Mutations in Cancer, the most prominent human cancer mutation database. For the project's initial phase, we focused on the subset of the COSMIC data corresponding to Cancer Gene Census (CGC) genes. A total of 670 canine orthologs were found for 721 CGC genes. In these genes, 365 K unique mutations across 160 tumour types were converted successfully to canine coordinates. We identified shared putative cancer-driving mutations, including pathogenic and hotspot mutations and mutations bearing similar biomarker associations with diagnostic, prognostic and therapeutic utility. Thus, this structured caninisation of human cancer mutations facilitates the interpretation and annotation of canine mutations and helps bridge the knowledge gap to enable canine precision medicine.  相似文献   

Seedling growth and establishment in natural stands of yellow-cedar (Chamaecyparis nootkatensis) seedlings derived from the use of modified seed dormancy-breaking treatments     

Raimondi  Nancy  Kermode  Allison R. 《New Forests》2004,27(1):55-67

Following dispersal from the parent tree, seeds of yellow-cedar (Chamaecyparis nootkatensis[D. Don] Spach) exhibit low germination, primarily as a result of coat-imposed dormancy. Dormancy of the mature (intact) seed is effectively terminated by traditional warm/cold treatments. A chemical treatment using the anaesthetic 1-propanol combined with a three day warm water soak (30 °C), a two day GA₃ treatment and 60 d of moist chilling not only promotes high germinability of yellow-cedar seeds, but also elicits vigorous post-germinative growth following seedling emergence under nursery greenhouse conditions. Here we compare the effectiveness of the more traditional warm/cold treatments with the chemical treatment in terms of their capacity to elicit vigorous growth and establishment in natural stands following transplant of seedlings from a nursery greenhouse environment. Two seed lots (42313 and 43697) and open-pollinated seed from parent trees 13-6 and 19-8 showed equivalent seedling growth in natural stands following the chemical treatment and two traditional warm/cold treatments typically used for dormancy breakage by the forest industry and by the Ministry of Forests in British Columbia. The chemical protocol offers the advantage of reducing the time required to break seed dormancy. We have now demonstrated that it yields seedlings that exhibit vigorous growth and are capable of withstanding the vagaries of the environment.  相似文献   

Dietary patterns and survival of older Europeans: the EPIC-Elderly Study (European Prospective Investigation into Cancer and Nutrition)     

Bamia C  Trichopoulos D  Ferrari P  Overvad K  Bjerregaard L  Tjønneland A  Halkjaer J  Clavel-Chapelon F  Kesse E  Boutron-Ruault MC  Boffetta P  Nagel G  Linseisen J  Boeing H  Hoffmann K  Kasapa C  Orfanou A  Travezea C  Slimani N  Norat T  Palli D  Pala V  Panico S  Tumino R  Sacerdote C  Bueno-de-Mesquita HB  Waijers PM  Peeters PH  van der Schouw YT  Berenguer A  Martinez-Garcia C  Navarro C  Barricarte A  Dorronsoro M  Berglund G  Wirfält E  Johansson I  Johansson G  Bingham S  Khaw KT  Spencer EA  Key T  Riboli E  Trichopoulou A 《Public health nutrition》2007,10(6):590-598

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Dimeric inhibitors of human salivary alpha-amylase from emmer (Triticum dicoccon Schrank) seeds     

Fontanini D  Capocchi A  Muccilli V  Saviozzi F  Cunsolo V  Saletti R  Foti S  Galleschi L 《Journal of agricultural and food chemistry》2007,55(25):10452-10460

The proteins belonging to the cereal trypsin/alpha-amylase inhibitor family are abundant water/salt-soluble flour proteins active against alpha-amylases from several seed parasites and pests and inactive against endogenous alpha-amylases. Three alpha-amylase inhibitor families have been described in cereals that vary in size and are differently expressed among Triticeae seeds. The present work investigates the presence of human salivary alpha-amylase inhibitors in emmer (Triticum dicoccon Schrank) flour. The isolation was obtained by a series of chromatography steps, and the purification progress was monitored through the inhibition of human salivary alpha-amylase activity. The purified fraction was subjected to protein sequencing by tandem mass spectrometry (MSMS) of the tryptic digests obtained after the sample separation on 2-DE. MSMS data indicated that the emmer alpha-amylase inhibitory fraction was composed of two newly identified proteins [emmer dimeric inhibitor 1 (EDI-1) and emmer dimeric inhibitor 2 (EDI-2)] sharing very high identity levels with related proteins from Triticum aestivum.  相似文献   

Racemization at C-2 of naringin in sour oranges with increasing maturity determined by chiral high-performance liquid chromatography     

Caccamese S  Bianca S  Santo D 《Journal of agricultural and food chemistry》2007,55(10):3816-3822

Naringin is the major flavanone-7-O-glycoside of sour orange, and it is mainly responsible for the bitter taste of the fruit. The relative content of (2S)- and (2R)-naringin in the albedo of sour oranges during maturation in the entire season was determined by normal phase HPLC using Chiralcel OD-H as chiral stationary phase and n-hexane/ethanol doped with 0.5% of TFA as mobile phase. HPLC traces were complicated by the presence of (2S)-neohesperidin, and a software-guided analysis was developed to assess the relative amount of the C-2 diastereomers of naringin. A sigmoid curve was obtained showing variation from 94% of (2S)-naringin in very immature fruits to 69.7% in mature fruit samples. Spontaneous epimerization of (2S)-naringin in the ethanolic solutions of the albedo was noted after prolonged keeping for less acid samples. The separation of the C-2 diastereomers of other flavanoid-7-O-glycosides present in Citrus (neoeriocitrin, neohesperidin, and eriocitrin) was also obtained by chiral HPLC and afforded the identification, including stereochemistry, of the eluting peaks in the HPLC traces of the albedo extracts.  相似文献   

Effects of sialidase knockout and complementation on virulence of Mycoplasma gallisepticum     

May M  Szczepanek SM  Frasca S  Gates AE  Demcovitz DL  Moneypenny CG  Brown DR  Geary SJ 《Veterinary microbiology》2012,157(1-2):91-95

Reannotation of the pathogenic Mycoplasma gallisepticum strain R(low) genome identified the hypothetical gene MGA_0329 as a homolog of the sialidase gene MS53_0199 of Mycoplasma synoviae strain MS53. Potent sialidase activity was subsequently quantitated in several M. gallisepticum strains. Because sialidase activity levels correlate significantly with differing M. synoviae strain virulence, we hypothesized this enzyme may also influence the virulence of M. gallisepticum. MGA_0329 was disrupted in strain R(low) to create mutants 6, 358 and P1C5, which resulted in the loss of sialidase activity in all three mutants. Chickens infected with the knockout mutants had significantly less severe (P<0.05) tracheal lesions and tracheal mucosal thickening than chickens infected with equal doses of strain R(low). Significantly fewer (P<0.05) CCU especially of strains 6 and P1C5 were recovered at necropsy. Mini-Tn4001tet plasmid pTF20 carrying a wild-type copy of MGA_0329 with its native promoter was used to complement the genetic lesion in strain P1C5. Three clones derived from P1C5, each having one copy of MGA_0329 stably transposed into a different site in its genome, expressed sialidase restored to wild-type activity levels (1.58×10(-8)U/CFU). Complementation of P1C5 with MGA_0329 did not restore it to wild-type levels of virulence, indicating that the contribution of sialidase to M. gallisepticum virulence is not straightforward.  相似文献   

Acaricidal properties of the essential oil of Melaleuca alternifolia Cheel (tea tree oil) against nymphs of Ixodes ricinus     

Iori A  Grazioli D  Gentile E  Marano G  Salvatore G 《Veterinary parasitology》2005,129(1-2):173-176

The aim of the study was to examine the acaricidal effect of essential oil of Melaleuca alternifolia (tea tree oil, TTO) at different doses (4, 6, 8 and 10 microl) and for different exposure times (30, 60, 90 and 120 min) on nymphs of Ixodes ricinus. A dose of 8 microl TTO was lethal for more than 70% of ticks when inhaled and this effect was enhanced when the dose was increased to 10 microl (> 80%). The effect was correlated with the duration of exposure of ticks to TTO, with a significant effect being observed after 90 min exposure. The findings show that TTO has acaricidal properties and could be extremely useful in controlling ticks that are efficient vectors of pathogens.  相似文献   

Sex determination in the common buzzard (Buteo buteo) by means of endoscopy and DNA analysis     

Angioletti A  Battocchio M  Veronesi MC  Raimondi S 《Veterinary research communications》2003,27(Z1):197-199

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