Phylogeographic patterns and possible incipient domestication of <Emphasis Type="Italic">Jacaratia mexicana</Emphasis> A. DC. (Caricaceae) in Mexico     

D. Arias  J. Peñaloza-Ramírez  O. Dorado  P. Cuevas-Reyes  Esaú Leyva  Ana Luisa Albarrán-Lara  G. Rangel-Altamirano 《Genetic Resources and Crop Evolution》2010,57(8):1227-1238

Jacaratia mexicana A. DC. (Caricaceae) is a tropical tree distributed throughout Mexico and Mesoamerica. Some evidence in Mexico indicates the presence of an incipient domestication process in this species. Phylogeographical analyses can potentially determine contemporary patterns of gene flow, isolation between population lineages, as well as historical processes such as population bottlenecks or expansions on their geographical areas. In this study we reconstruct the phylogeographical patterns in populations of J. mexicana A. DC., in order to find differences between genetic variation among wild and cultivated populations utilizing chloroplast DNA and nuclear DNA sequences. We generate a Bayesian phylogenetic tree, to estimate the divergence time between clades using calibrated mutation rates. We also infer the demographic history of these populations using neutrality tests among wild and cultivated accessions. We identified higher levels of haplotype and nucleotide diversity for the cpDNA and ITS types in wild populations than in domesticated populations. These results indicate a reduction of genetic diversity derived from human selection on domestication traits. Neutrality test suggests population expansion detected by the significant negative values of Fu’s Fs in the cultivated populations of this specie. These process results in an excess of rare polymorphism with the fixation of certain advantageous mutation throughout time, this implication are in accordance with the role of the strong selection in the fruit traits of J. mexicana. The dated phylogeny constructed with BEAST program indicated a dispersion pattern for the J. mexicana ancestors across the South Pacific and South Eastern populations during the late Pliocene. Posterior dispersion and divergence in the clades from Central Mexico and North Pacific are in agreement with the episodes of mountain-building in different regions of Mexico.  相似文献   

Ecological,morphological and genetic diversity in <Emphasis Type="Italic">Oryza rufipogon</Emphasis> Griff. (Poaceae) from Hainan Island,China     

Dong Yibo  Pei Xinwu  Yuan Qianhua  Wu Hongjin  Wang Xujing  Jia Shirong  Peng Yufa 《Genetic Resources and Crop Evolution》2010,57(6):915-926

In this study, ecological, morphological and genetic diversity in 11 surviving populations of Oryza rufipogon Griff. from Hainan Island, China were investigated. These data served to provide much needed data in support of conservation strategies. The results divided O. rufipogon into six ecotypes. The cluster analysis based on 19 morphological features showed clear differentiation among populations or within populations. The cluster analysis based on SSR also revealed similar results. The ecological, morphological and genetic diversity observed in O. rufipogon resulted in the following conservation recommendations: (1) the four currently protected O. rufipogon localities should be maintained, due to the different ecological communities represented at these sites; (2) some populations, such as HL (Hele county, Hainan Island), should be protected, but some populations, such as FC (Fucheng county, Hainan Island) and DL (Dalu county, Hainan Island), might not be protected. (3) An isolation zone should be established to avoid possible introgression between O. sativa L. and O. rufipogon; and human activities that impact O. rufipogon should be reduced or eliminated.  相似文献   

Redoxtrons – An experimental system to study redox processes within the capillary fringe     

Kristof Dorau  Daniel Uteau  Markus Maisch  Andreas Kappler  Stephan Peth  Tim Mansfeldt 《European Journal of Soil Science》2023,74(1):e13347

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Evidence of dissolved trivalent manganese in acidic forest soils     

Constantin Lux  Tim Mansfeldt 《植物养料与土壤学杂志》2023,186(3):321-329

Background

Evidence of trivalent manganese (Mn³⁺) in the aqueous phase of soils is unknown so far although this strong oxidant has large environmental implications.

Aims

We aimed to modify a spectrophotometric protocol (porphyrin method) and to discriminate between Mn²⁺ and Mn³⁺ in the aqueous phase of forest soils based on kinetic modeling.

Methods

We investigated manganese speciation in 12 forest floor solutions and 41 soil solutions from an acidic forest site by adjusting pH and correcting for absorbance.

Results

The solutions showed broad ranges in pH (3.4−6.3), dissolved organic carbon (DOC, 1.78−77.1 mg C L⁻¹), and total Mn (Mn_T, 23.9−908 µg L⁻¹). For acidic solutions, a pH-buffer was added to increase the pH of the solutions to 7.5−8.0, and background absorption was corrected for colored solutions, that is, solutions high in DOC. This was done to accelerate the reaction kinetics and avoid overestimation of Mn_T concentrations. After the pH and color adjustments, the comparison of Mn_T concentrations between the porphyrin method and optical emission spectrometry showed good agreement. Trivalent Mn, which is stabilized by organic ligands, constitutes significant proportions in both forest floor solutions (10−87%) and soil solutions (0.5−74%).

Conclusions

The dissolved Mn³⁺ is present in acidic forest soils. Thus, we revise the paradigm that this species is not stable and encourage to apply the revised method to other soils.  相似文献   

Screening for resistance to clover rot (Sclerotinia spp.) among a diverse collection of red clover populations (Trifolium pratense L.)     

Tim Vleugels  Gerda Cnops  Erik van Bockstaele 《Euphytica》2013,194(3):371-382

Red clover (Trifolium pratense) is an important perennial forage crop that is widely cultivated in Europe. Clover rot remains a major disease in red clover, but resistance breeding is hampered by the lack of available sources of resistance. Moreover, little is known about the factors that influence clover rot resistance. In this paper we evaluated the variation in clover rot susceptibility among a diverse collection of 113 red clover accessions, with the aim of identifying more resistant accessions. Clover rot susceptibility was assessed with a high throughput bio-test on young plants. We found significant variation in clover rot susceptibility, within and among accessions. ‘Tedi’, ‘Maro’ and ‘No 292’ were the most resistant accessions. Fifteen diploid accessions were more susceptible than the average accession with the cultivar ‘Nemaro’ being the most susceptible. Clover rot susceptibility was not correlated with isoflavone levels from Mullaney et al. (Agronomy abstract. ASA, Madison, p 195, 2000). Cultivars were more resistant than landraces and wild accessions and tetraploid cultivars were more resistant than diploid cultivars. Besides the in-depth analysis for clover rot susceptibility, possible correlations with plant architecture and other diseases were investigated. Growth habit, branching, plant yield, flowering date and susceptibility to mildew, virus and rust diseases were investigated in a 3-year field trial. Unlike previously suggested, clover rot susceptibility was not correlated with branching or with plant yield over three years. On the other hand, late flowering accessions and accessions with erect growth habit were less susceptible to clover rot. Clover rot susceptibility was not correlated with susceptibility to rust disease (Uromyces trifolii) or viral diseases, but negatively with susceptibility to mildew (Erysiphe polygoni). Because no completely resistant accessions were found, the best way to improve clover rot resistance would be to select recurrently for resistant genotypes among diverse cultivars and landraces with lower susceptibility. Tetraploidisation of diploid populations with a higher resistance level can provide an additional level of protection.  相似文献   

Preliminary carbon sequestration modelling for the Australian macadamia industry     

Tim Murphy  Graham Jones  Jerry Vanclay  Kevin Glencross 《Agroforestry Systems》2013,87(3):689-698

There is a need to accurately estimate the carbon sequestration potential of many of our agricultural and horticultural industries now that the Australian Government has introduced the Carbon Farming Initiative and is planning to introduce an emissions trading scheme in 2015. This study estimates that the carbon sequestration of macadamia plantations is around 3t CO₂e/ha/yr, and provides a methodology to assess the carbon footprint of the Australian Macadamia Industry. This study attempts to estimate the growth rate, and subsequently the sequestration rate of plantation grown Macadamia spp. through regression analysis of stem characteristics of destructively sampled Macadamia integrifolia var. 344. A volume increment curve was also derived using three common genetic varieties (A4, A16 & A42). This curve is used to extrapolate a carbon sequestration rate for the national macadamia plantation estate. Once volume estimates and sequestration rates are determined, an economic benefit of the carbon sequestration can be estimated by auditing the amount of carbon produced by activities such as “on farm” fuel use, fuel used in transport, and energy used in producing the product. In this way, a life cycle carbon budget can be developed that will aid the sustainable development of the macadamia and horticultural industries in Australia through the production of carbon credits from the carbon stored in the trees.  相似文献   

The influence of the tracer injection–acquisition interval on the distribution of 99mTc-ECD in the brain of laboratory cats     

Tim Waelbers  Kathelijne Peremans  Simon Vermeire  André Dobbeleir  Vincent Boer  Hendrik de Leeuw  Maarten Vente  Koen Piron  Myriam Hesta  Ingeborgh Polis 《Journal of Veterinary Behavior: Clinical Applications and Research》2013,8(6):444-449

Single-photon emission computed tomography (SPECT) can be used to study the regional distribution of the cerebral blood flow in the feline brain without interference of anesthetics. When the tracer, ^99mtechnetium-ethyl cysteinate dimer (^99mTc-ECD), is injected in the awake animal, the acquisition can be performed afterward under general anesthesia, whereas the tracer distribution still represents the regional cerebral blood flow (rCBF) in the awake animal. The aim of this study was to look at the in vivo stability of ^99mTc-ECD in the feline brain. For this purpose, 6 cats (n = 6) were used, and 3 serial acquisitions were performed starting at 40 (T40), 60 (T60), and 85 (T85) minutes after tracer injection. Total counts and perfusion indices (PIs), normalized to the total brain and to the cerebellum, were calculated. When T85 was compared with T40, total counts decreased, depending on the brain region, with 29% (left thalamus) to 51% (bulbus olfactorius). These regional differences in tracer clearance resulted in significantly altered PIs at T85 as compared with T40. This study shows that ^99mTc-ECD SPECT can be used in cats for studying the rCBF and that the clearance of ^99mTc-ECD in the feline brain is region dependent. As a result, the acquisition should be started between 40 and 60 minutes after tracer injection.  相似文献   

Influence of stem rot pathogen <Emphasis Type="Italic">Fomitiporia</Emphasis> sp. on “Sanbu-sugi” cultivar of the Japanese cedar <Emphasis Type="Italic">Cryptomeria japonica</Emphasis>     

Yoshie Terashima 《Journal of Wood Science》2013,59(1):80-87

An unidentified Fomitiporia sp. causes severe white-rot on stems of a cultivar “Sanbu-sugi” of the Japanese cedar, Cryptomeria japonica. The influence of the fungus on tree health and wood properties was determined. Bark from dead branches and xylem from living branches contained more glucose than bark from living branches and xylem from dead branches. Tree heights at which annual rings were disconnected were 2, 4 and 6 m at ages 37, 15 and 24 years old, respectively. The pH values of damaged parts were lower than those of non-damaged parts, and the damaged parts were clearly identified using bromocresol green solution. Weight loss of sapwood during 60 days of fungal degradation was 1.4 %, which was less than that by a saprophyte, Trametes versicolor. The amount of polyphenols in the heartwood from damaged tree stems was less than that from non-damaged stems. Degraded parts were less stiff than the non-degraded sapwood as measured with a wood-decay tester, Pilodyn. Our observations indicate that damaged stems are chemically and physically inferior to non-damaged stems.  相似文献   

Trial by Fire: Improving Our Ability to Reduce Wildfire Impacts to Sage-Grouse and Sagebrush Ecosystems Through Accelerated Partner Collaboration     

Tim Murphy  David E. Naugle  Randall Eardley  Jeremy D. Maestas  Tim Griffiths  Mike Pellant  San J. Stiver 《Herpetological Monographs》2013,35(3):2-10

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Complex Creative Systems: Principles,processes, and practices of transformation     

Fred Provenza  Hugh Pringle  Dean Revell  Nan Bray  Chip Hines  Richard Teague  Tim Steffens  Matt Barnes 《Herpetological Monographs》2013,35(5):6-13

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