Putative virulence-related genes in Vibrio anguillarum identified by random genome sequencing     

Rodkhum C  Hirono I  Stork M  Di Lorenzo M  Crosa JH  Aoki T 《Journal of fish diseases》2006,29(3):157-166

The genome of Vibrio anguillarum strain H775-3 was partially determined by a random sequencing procedure. A total of 2,300 clones, 2,100 from a plasmid library and 200 from a cosmid library, were sequenced and subjected to homology search by the BLAST algorithm. The total length of the sequenced clones is 1.5 Mbp. The nucleotide sequences were classified into 17 broad functional categories. Forty putative virulence-related genes were identified, 36 of which are novel in V. anguillarum, including a repeat in toxin gene cluster, haemolysin genes, enterobactin gene, protease genes, lipopolysaccharide biosynthesis genes, capsule biosynthesis gene, flagellar genes and pilus genes.  相似文献   

Growth and production of the Amazonian tambaqui in fixed cages under different feeding regimes     

S. Chellappa  N. T. Chellappa  W. B. Barbosa  F. A. Huntingford  M. C. M. Beveridge 《Aquaculture International》1995,3(1):11-21

Experimental culture of the native Amazonian fish tambaqui, Colossoma macropomum, in fixed cages was carried out over a period of 8 months, in Lake Urubu (Rio Grande do Norte, Brazil), to assess the viability of fixed cage culture of tambaqui and to test the influence of diet on growth rates. Nine synthetic net cages (1 m³) were each stocked with 45-day-old fish (mean weight 3 g; mean total body length 51 mm) at a density of 34 fry m^–3. During the first 2 months of culture, fish were fed a balanced formulated feed on an as-fed basis at the rate of 5% body weight day^–1. During months 3–8 this continued for fish in treatment 1 while those in treatment 2 were fed tropical regional fruits, on a wet weight basis at the rate of 5% body wt day^–1. Fish in treatment 3 were given no supplementary feed. Monthly biometric measurements were made on all fish. Fixed cage fish culture was shown to be a viable and simple technique. Survival in all treatments was 100%. With balanced supplementary feed, production was 14.4 kg m^–3, compared with 4.9 kg m^–3 and 2.1 kg m^–3, respectively, in the treatments where fish were fed with fruits and were not given any supplementary feed.  相似文献   

Apparent digestible protein,energy and amino acid availability of three plant proteins in Florida pompano,Trachinotus carolinus L. in seawater and low‐salinity water     

M. RICHE  T.N. WILLIAMS 《Aquaculture Nutrition》2010,16(3):223-230

Two experiments were conducted with Florida pompano, Trachinotus carolinus L. at 3 and 28 g L^?1 salinity to determine apparent crude protein digestibility (ACPD), energy digestibility (AED) and amino acid availability (AAAA) from soybean meal (SBM), soy protein isolate (SPI) and corn gluten meal (CGM). Mean AAAA was similar to ACPD. In fish adapted to 3 g L^?1 salinity, they were 81.2% and 81.9% (CGM), 93.6% and 92.2% (SBM), 93.8% and 93.1% (SPI) for AAAA and ACPD respectively. In fish adapted to 28 g L^?1, they were 84.5% and 83.4% (CGM), 86.5% and 87.1% (SBM), and 83.4% and 85.0% (SPI) for AAAA and ACPD respectively. The AED was highest for SPI and lowest for SBM and inversely related to carbohydrate. The ACPD, AED and AAAA of soy products appeared to be lower in high salinity, whereas CGM was unaffected. The data suggest that SBM, SPI and CGM should be further evaluated as partial fishmeal replacements in Florida pompano diets. Application of the generated coefficients can be used to develop well‐balanced, low‐cost diets for Florida pompano reared in low salinity or seawater.  相似文献   

Routine metabolism of larval green sturgeon (Acipenser medirostris Ayres)     

E. Gisbert  J.J. Cech Jr.  S.I. Doroshov 《Fish physiology and biochemistry》2001,25(3):195-200

Routine metabolic rates of green sturgeon (Acipenser medirostris) from hatching to 31 days post hatch (dph) were determined under normoxic conditions. During the endogenous feeding stage that comprised period from hatching to 15 dph, the oxygen consumption rate (MO₂, μg O₂ larva⁻¹ h⁻¹) increased 5-fold before yolk reserves became exhausted and MO₂ rates steady. The allometric relationships between MO₂ and body mass had mass exponents greater than 1.0 (b=1.64±0.21) and equal to 1.0 (b=1.04±0.07) during the endogenous and exogenous feeding phases, respectively. The magnitude and changes of MO₂ rates in green sturgeon larvae reflected their early ontogeny, especially during the endogenous feeding phase when the increase in metabolic rates was associated with organogenesis, acquisition of organ functions, and the conversion of yolk sac into new tissues. This revised version was published online in August 2006 with corrections to the Cover Date.  相似文献   

Quantification of Flavobacterium psychrophilum in rainbow trout, Oncorhynchus mykiss (Walbaum), tissues by qPCR     

Orieux N  Bourdineaud JP  Douet DG  Daniel P  Le Hénaff M 《Journal of fish diseases》2011,34(11):811-821

A qPCR assay was developed for rapid and sensitive detection of Flavobacterium psychrophilum, the aetiological agent of bacterial cold-water disease and rainbow trout fry syndrome in salmonid fish worldwide. A set of F. psychrophilum-specific primers based on 16S rRNA gene sequences was designed and validated for specific detection and quantification of DNA isolated from representative strains of F. psychrophilum. The qPCR assay exhibited a high specificity for the 16S rRNA gene of F. psychrophilum (from 4 × 10(8) down to 11 copies per reaction) but not for other Flavobacterium species or other bacteria including fish pathogens. This qPCR-based method proved to be useful in the quantification of the F. psychrophilum titre present within organs dissected out from diseased fish. As the F. psychrophilum genome contains six copies of the 16S rRNA gene, we could infer a limit of detection corresponding to two bacteria per reaction, corresponding to 800 bacteria per fish tissue sample, and therefore 20 F. psychrophilum cells mg(-1) of tissue (for sample weighing 40 mg). The qPCR assay reported here could be a useful tool for veterinary diagnostic laboratories to monitor the F. psychrophilum infection level in fish farms.  相似文献   

Assessing the effects of line capture and barotrauma relief procedures on post-release survival of key tropical reef fish species in Australia using recreational tagging clubs     

W. D. SUMPTON  I. W. BROWN  D. G. MAYER  M. F. McLENNAN  A. MAPLESTON  A. R. BUTCHER  D. J. WELCH  & J. M. KIRKWOOD  B. SAWYNOK  & G. A. BEGG 《Fisheries Management and Ecology》2010,17(1):77-88

Abstract  Common coral trout, Plectropomus leopardus Lacepède, crimson snapper, Lutjanus erythropterus Bloch, saddletail snapper, Lutjanus malabaricus (Bloch & Schneider), red emperor, Lutjanus sebae (Cuvier), redthroat emperor, Lethrinus miniatus (Schneider) and grass emperor, Lethrinus laticaudis Alleyne & Macleay, were tagged to determine the effects of barotrauma relief procedures (weighted shot-line release and venting using a hollow needle) and other factors on survival. Release condition was the most significant factor affecting the subsequent recapture rate of all species. Capture depth was significant in all species apart from L. malabaricus and L. miniatus , the general trend being reduced recapture probability with increasing capture depth. Recapture rates of fish hooked in either the lip or mouth were generally significantly higher than for those hooked in the throat or gut. Statistically significant benefit from treating fish for barotrauma was found in only L. malabaricus , but the lack of any negative effects of treating fish indicated that the practices of venting and shot-lining should not be discouraged by fisheries managers for these species.  相似文献   

Epizootiology of Renibacterium salmoninarum, the causal agent of bacterial kidney disease in salmonid fish   总被引：1，自引：0，他引：1  

B. AUSTIN  J. N. RAYMENT 《Journal of fish diseases》1985,8(6):505-509

Abstract. By use of a selective medium, Renibacterium salmoninarum was recovered from rainbow trout, Salmo gairdneri Richardson. With asymptomatic animals, small numbers of Renibacterium colonies were recovered only from the anterior part of the kidney; whereas in clinically diseased fish, dense pure culture growth was obtained from kidney, spleen, heart, blood, ascitic fluid and faeces. There was no evidence for the presence of R. salmoninarum in the water or sediment of 56 freshwater fish farms in England and Wales. Nevertheless, laboratory–based experiments showed that the pathogen was excreted in the faeces of clinically diseased fish. Moreover, there was survival of the bacterial cells for up to 21 days in sediment/faecal material.  相似文献   

Relative potencies of natural estrogens on vitellogenin and choriogenin levels in the Indian freshwater spotted snakehead, <Emphasis Type="Italic">Channa punctata</Emphasis>: in vivo and in vitro studies     

K. V. Rani  N. Sehgal  S. V. Goswami  Om Prakash 《Fish physiology and biochemistry》2010,36(3):587-595

The relative efficacies of three natural estrogens viz., estrone (E₁), estradiol-17β (E₂) and estriol (E₃) to induce synthesis of vitellogenin (Vg) and choriogenin (Chg) were assessed in primary hepatocyte cultures of the Indian freshwater spotted snakehead, Channa punctata. Hepatocytes were isolated from the spotted snakehead liver by a non-enzymatic protocol. Optimum culture conditions were standardized for ensuring their viability and functioning. Isolated hepatocytes were cultured for 48 h for monolayer formation and then exposed to various concentrations (0.001–10 μM) of the three estrogens. Competitive homologous ELISAs, developed and validated for spotted snakehead Vg and Chg were employed to determine the amounts of these two proteins secreted into the culture medium after 48 h of incubation. The results reveal that although all the three estrogens were effective in inducing the production of Vg and Chg in a dose-dependent manner, there were differences in their relative potencies. Of three estrogens, E₁ was the least potent and could induce synthesis of Vg and Chg only at a minimum concentration of 0.5 μM; whereas significant levels of both the proteins were quantified in culture medium by exposing the hepatocytes to E₂ or E₃ even at a concentration of 0.001 μM. All three estrogens were effective in inducing synthesis of Vg and Chg in vivo also. These results suggest the possibility of employing the above in vitro experimental design to monitor the presence of estrogens/estrogen-like chemicals in natural waters, which could interfere with the estrogen receptor system of fish. This study further points to the possibility of using Chg, in addition to Vg, as a parameter for screening various chemicals for their estrogenic activity.  相似文献   

Inherent bias in using aggregate CPUE to characterize abundance of fish species assemblages     

Pierre Kleiber  Mark N. Maunder 《Fisheries Research》2008,93(1-2):140-145

We have analyzed the practice of assessing an assemblage of fish species in a multispecies fishery on the basis of aggregate catch per unit effort (CPUE), which is the summed catch of all species per unit of effort. We show that at the onset of fishing or of a large positive or negative change in fishing effort, aggregate CPUE will be hyper-responsive, that is, relative change of aggregate CPUE will be greater than that of aggregate abundance. We also show that as the fishery reaches equilibrium, the aggregate CPUE in most circumstances will continue to be hyper-responsive, with a greater relative change from its value at the start than the aggregate abundance. However, there are less likely circumstances in which the aggregate CPUE will be hyper-stable compared to aggregate abundance. The circumstances leading to hyper-responsiveness or hyper-stability depend on the distribution of productivity and fishery vulnerability parameters among the species in the aggregation.  相似文献   

Haemolymph metabolic variables in relation to eyestalk ablation and gonad development of Pacific white shrimp Litopenaeus vannamei Boone     

G F Arcos  A M Ibarra  C Vazquez-Boucard  E Palacios  & I S Racotta 《Aquaculture Research》2003,34(9):749-755

The present study analyses some biochemical variables in haemolymph proposed as predictive indicators of the maturation capability following eyestalk ablation. Haemolymph of captive females was obtained before and 8 days after eyestalk ablation, and levels of haemocyanin, total proteins, glucose, lactate, cholesterol, triacylglycerides and vitellogenin were determined. Biochemical variables were also analysed in the hepatopancreas at the end of the experiment. Females were grouped as immature (previtellogenic stage) and mature (vitellogenic and cortical stages) based on histological analysis done 8 days after eyestalk ablation. To analyse haemolymph variables before eyestalk ablation in relation to maturation capability, immature females were classified as those with a low maturation capability and mature females as those with a high maturation capability. Females of high maturation capability had significantly higher vitellogenin levels before eyestalk ablation than females of low maturation capability. No significant differences were found for the other biochemical variables. Vitellogenin was also higher in mature than in immature females at the end of the experiment. These results indicate that vitellogenin levels in haemolymph could be used as possible predictive criteria of maturation capability, possibly because they reflect the degree of ovarian development at the time of eyestalk ablation.  相似文献