Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella     

Navarre WW  Porwollik S  Wang Y  McClelland M  Rosen H  Libby SJ  Fang FC 《Science (New York, N.Y.)》2006,313(5784):236-238

Horizontal gene transfer plays a major role in microbial evolution. However, newly acquired sequences can decrease fitness unless integrated into preexisting regulatory networks. We found that the histone-like nucleoid structuring protein (H-NS) selectively silences horizontally acquired genes by targeting sequences with GC content lower than the resident genome. Mutations in hns are lethal in Salmonella unless accompanied by compensatory mutations in other regulatory loci. Thus, H-NS provides a previously unrecognized mechanism of bacterial defense against foreign DNA, enabling the acquisition of DNA from exogenous sources while avoiding detrimental consequences from unregulated expression of newly acquired genes. Characteristic GC/AT ratios of bacterial genomes may facilitate discrimination between a cell's own DNA and foreign DNA.  相似文献   

Pigeonpea improvement: An amalgam of breeding and genomic research     

Sameer Kumar Chanda Venkata  Ganga Rao Nadigatla Veera Prabha Rama  Rachit K. Saxena  Kulbhushan Saxena  Hari D. Upadhyaya  Moses Siambi  Said N. Silim  Kothapally Narasimha Reddy  Anupama J. Hingane  Mamta Sharma  Shivali Sharma  Stephen Dominic Lyimo  Rose Ubwe  Meshack Makenge  Kananji Gad  Paul Kiprotich Kimurto  Manuel Amane  Kennedy Kanenga  Yuventino Obong  Emanuel Monyo  Chris Ojiewo  Nagesh Kumar Mallela Venkata  Jaganmohan Polineni Rao  Prashanthi Lakkireddy  Sudhakar Chourat  Indraprakash Singh  Sobhan Sajja  Shruthi Hirikara Beliappa  Rajeev K. Varshney 《Plant Breeding》2019,138(4):445-454

In the past five decades, constant research has been directed towards yield improvement in pigeonpea resulting in the deployment of several commercially acceptable cultivars in India. Though, the genesis of hybrid technology, the biggest breakthrough, enigma of stagnant productivity still remains unsolved. To sort this productivity disparity, genomic research along with conventional breeding was successfully initiated at ICRISAT. It endowed ample genomic resource providing insight in the pigeonpea genome combating production constraints in a precise and speedy manner. The availability of the draft genome sequence with a large‐scale marker resource, oriented the research towards trait mapping for flowering time, determinacy, fertility restoration, yield attributing traits and photo‐insensitivity. Defined core and mini‐core collection, still eased the pigeonpea breeding being accessible for existing genetic diversity and developing stress resistance. Modern genomic tools like next‐generation sequencing, genome‐wide selection helping in the appraisal of selection efficiency is leading towards next‐generation breeding, an awaited milestone in pigeonpea genetic enhancement. This paper emphasizes the ongoing genetic improvement in pigeonpea with an amalgam of conventional breeding as well as genomic research.  相似文献   

Commuting distances to local non‐farm workplaces and out‐migration: The case of Northeast Thailand     

Yuko Shirai  Stephen Leisz  Jefferson Fox  A. Terry Rambo 《Asia Pacific viewpoint》2019,60(3):280-295

The relationship between commuting distances and where people work has been studied for urban contexts in both developed countries and developing countries. However, few studies have examined the situation in rural areas, and none look at commuting distances to non‐farm workplaces in rural areas of developing countries. This paper investigates how commuting distance, and thus accessibility, to local non‐farm work influences non‐farm employment and out‐migration from rural villages in Northeast Thailand. The main issues examined are: (i) the distance that rural residents travel to work in local non‐farm jobs; and (ii) the influence that local non‐farm employment has on the number of outmigrants from rural villages. The study finds: (i) distance between villages and non‐farm work sites impact the number of villagers who are employed in regular wage work; (ii) beyond 20 km villagers are less likely to travel to non‐farm employment using their own means of transportation; and (iii) employment in regular wage work decreases outmigration. The findings from this study contribute to the debates over the drivers of rural out‐migration, rural livelihood changes, and agrarian changes that are taking place in Southeast Asia.  相似文献   

Carbonate mineral filtrants with new surfaces reduce alkalinity in seawater and artificial seawater: Preliminary findings     

Gary Adams  Stephen Spotte 《Aquacultural Engineering》1985,4(4):305-311

Silica sand (silica), coral (aragonite), and oyster shell (calcite) were ground to similar particle sizes and placed in seawater and artificial seawater (GP2 Medium). Alkalinity and pH values of the artificial seawater decreased substantially over 24 h when in contact with coral and oyster shell; the effects in seawater were minor. Once alkalinity has been reduced, the maintenance of stable pH at values typical of seawater is made more difficult. The data, which are preliminary, have practical application.  相似文献   

Integrating in situ quantitative geographic information tools and size‐specific,laboratory‐based growth zones in a dynamic river‐mouth estuary     

Mark S. Peterson  Marisa R. Weber  Melissa L. Partyka  Stephen T. Ross 《水产资源保护:海洋与淡水生态系统》2007,17(6):602-618

• 1. The ultimate determination of coastal habitat suitability requires the integration of both dynamic (i.e. water mass characteristics) and stationary (structural) habitats. An approach using real‐time streamed data collection, remote sensing, and GIS modelling to compare and contrast seasonal and spatial patterns in these habitat components of the eastern and western distributaries of the lower Pascagoula River estuary is described.
• 2. Structural and dynamic habitat characteristics are described using GIS and integrated with published growth data on juvenile mullet (Mugil spp.) and spot (Leiostomus xanthurus) to reveal zones of accelerated growth. Both mullet and spot had their greatest growth when water temperature and salinity (dynamic habitat) were physiologically optimal. The lack of spatial difference in the dynamic habitat between distributaries resulted in no growth zone differences for both species.
• 3. The integration of the growth zones with the structural habitat component showed that the west distributary, with its greater availability and reduced fragmentation of main channel marsh edge, should provide a greater area of essential fish habitat than the east distributary for juvenile spot, a marsh‐edge associate. Because juvenile mullet are less associated with structural wetland habitat, growth zones and the stationary (structural) habitat were not integrated.
• 4. The approach of integrating real‐time geo‐referenced water quality data with regional fish growth‐rate data is an important step towards a quantitative understanding of the hierarchical nature and inherent variability of dynamic coastal environments. The use of this holistic approach should lead to more effective management of estuarine systems, especially in regard to potential impacts within the estuary's watershed and to its coupling with offshore environments.

Copyright © 2007 John Wiley & Sons, Ltd.  相似文献   

Sowing time and direct seeding success of native tree species for restoring tropical forest ecosystems in northern Thailand     

Waiboonya  Panya  Elliott  Stephen 《New Forests》2020,51(1):81-99

New Forests - Direct seeding (sowing seeds directly into ground) is potentially a cost-effective method of forest restoration that could replace or complement conventional tree planting, under...  相似文献   

Some effects of off-road vehicles and sheep grazing on lizard populations in the mojave desert     

Stephen D. Busack  R.Bruce Bury 《Biological conservation》1974,6(3):179-183

The effects of two environmentally disruptive activities were determined using the numbers and biomass of lizards. Sheep grazing reduces ground cover necessary for some lizard species. The use of vehicles on the desert also eliminates vegetation and adversely affects lizard populations.  相似文献   

Micromorphology of soils in soliflucted materials,Okstindan, Northern Norway   总被引：1，自引：0，他引：1  

Charles Harris  Stephen Ellis 《Geoderma》1980,23(1):11-29

The micromorphology of two soil profiles developed on turf-banked solifluction lobes and a third profile formed on a larger turf-banked solifluction terrace is described. Four elements common to the three profiles are identified.In the horizontal plane the apparent long axes of detrital grains show preferred orientation parallel to the azimuth of the line of greatest slope, and in slides cut in the vertical plane aligned with the slope direction a somewhat stronger preferred orientation (or apparent dip of the grains) is observed parallel, or sub-parallel to the ground surface gradient. Secondly, coatings of matrix material are observed on the upper surfaces of detrital grains at depths greater than 50 cm. Above this depth similar coatings also appear on the sides and lower surfaces of detrital grains. Roughly horizontal flattened patches of matrix enrichment are also observed in the three profiles. These become more frequent with depth, producing a banded pattern of matrix concentrations separated by detrital grains. Finally, large rounded pores, or vesicles, are observed in the upper 25 cm of the three profiles.These micromorphological elements are described, and suggestions are made as to their origins.  相似文献   

Efficacy of Netminder® silicone release coating for biofouling reduction in bay scallop grow‐out and comparative effects on scallop survival,growth and reproduction     

Stephen T Tettelbach  Kim Tetrault  John Carroll 《Aquaculture Research》2014,45(2):234-242

Netminder^®, a water‐based silicone barrier release coating, was highly effective in reducing biofouling of lantern nets during grow‐out/overwintering of bay scallops, Argopecten irradians irradians, in a large‐scale restoration programme in New York, USA. Compared with untreated nets, scallops held in Netminder^®‐coated nets experienced reduced survival after 8 months, probably due to higher loads of epibionts on their shells. However, this was countered by higher reproductive and overall condition of scallops in treated vs. untreated nets; there were no consistent differences in shell growth in different net treatments. Although further testing is recommended under a wider range of conditions, we conclude that for the purposes of our scallop restoration work, coating nets with Netminder^® would eliminate the need for a gear change in spring, thus reducing labour costs; the coating process should be refined so that Velcro closures of nets do not become sealed shut.  相似文献   

Effect of ammonia on the growth rate and oxygen consumption of juvenile greenlip abalone, Haliotis laevigata Donovan     

James O. Harris  Greg B. Maguire  Stephen Edwards  Stephen M. Hindrum 《Aquaculture (Amsterdam, Netherlands)》1998,160(3-4):259-272

Juvenile greenlip abalone, Haliotis laevigata, (mean whole weight 4.48±1.9 g, mean±s.d., n=953) were highly sensitive to ammonia as indicated by depressed growth rate and food consumption measured over 2–3 months in bioassay tanks. For growth rate expressed on a whole weight basis, the EC₅ and EC₅₀ values (5 and 50% growth reductions) were 0.041 mg FAN l⁻¹ (Free Ammonia–Nitrogen) and 0.158 mg FAN l⁻¹, respectively. Shell growth rates declined over the entire experimental range (0.006–0.188 mg FAN l⁻¹). At the end of the bioassay, groups of abalone were transferred to respiratory chambers. Oxygen consumption rate increased to a maximum of 188% of control values at 0.235 mg FAN l⁻¹ and decreased slightly at the highest concentration of 0.418 mg FAN l⁻¹.  相似文献