Comparing apparent electrical conductivity measurements on a paddy field under flooded and drained conditions     

Mohammad Monirul Islam  Eef Meerschman  Timothy Saey  Philippe De Smedt  Ellen Van De Vijver  Marc Van Meirvenne 《Precision Agriculture》2012,13(3):384-392

Every growing season, paddy fields are kept both flooded and drained for a significant period of time. As a consequence, these soils develop distinct physico-chemical characteristics. For practical reasons, these soils are mostly sampled under dry conditions, but the question arises how representative the results are for the wet growing conditions. Therefore, the apparent electrical conductivity (EC_a) of a 1.4 ha alluvial paddy field located in the Brahmaputra floodplain of Bangladesh was measured in both dry and wet conditions by a sensing system using the electromagnetic induction sensor EM38, which does not require physical contact with the soil, and compared both surveys. Due to the smooth water surface under wet conditions which ensured increased stability of the sensing platform, the results of the survey showed considerably reduced micro-scale variability of EC_a. Furthermore, the wet survey results more reliably furnished soil-related information mainly due to the absence of soil moisture dynamics. The differences between EC_a under wet and dry conditions were attributed to differences in soil texture, mainly the sand content variation having considerable effect on soil moisture differences when flooded following drainage. Accordingly, the largest differences between EC_a under wet and dry conditions were found in those parts of the field with a large sand content. Hence, the conclusion was that an EC_a survey on flooded fields has an added value to precision soil management.  相似文献   

Innate lymphoid cells promote anatomical containment of lymphoid-resident commensal bacteria     

Sonnenberg GF  Monticelli LA  Alenghat T  Fung TC  Hutnick NA  Kunisawa J  Shibata N  Grunberg S  Sinha R  Zahm AM  Tardif MR  Sathaliyawala T  Kubota M  Farber DL  Collman RG  Shaked A  Fouser LA  Weiner DB  Tessier PA  Friedman JR  Kiyono H  Bushman FD  Chang KM  Artis D 《Science (New York, N.Y.)》2012,336(6086):1321-1325

The mammalian intestinal tract is colonized by trillions of beneficial commensal bacteria that are anatomically restricted to specific niches. However, the mechanisms that regulate anatomical containment remain unclear. Here, we show that interleukin-22 (IL-22)-producing innate lymphoid cells (ILCs) are present in intestinal tissues of healthy mammals. Depletion of ILCs resulted in peripheral dissemination of commensal bacteria and systemic inflammation, which was prevented by administration of IL-22. Disseminating bacteria were identified as Alcaligenes species originating from host lymphoid tissues. Alcaligenes was sufficient to promote systemic inflammation after ILC depletion in mice, and Alcaligenes-specific systemic immune responses were associated with Crohn's disease and progressive hepatitis C virus infection in patients. Collectively, these data indicate that ILCs regulate selective containment of lymphoid-resident bacteria to prevent systemic inflammation associated with chronic diseases.  相似文献   

Murine typhus in the homeless     

Badiaga S  Benkouiten S  Hajji H  Raoult D  Brouqui P 《Comparative immunology, microbiology and infectious diseases》2012,35(1):39-43

Homeless populations are particularly exposed to many vector-borne diseases because of their poor living conditions. We tested sera from 299 homeless people recruited in 2010 and 2011 in Marseilles, France for antibodies to Rickettsia typhi by microimmunofluorescence using a titer of 1:25 as a cut-off titer, and we confirmed the results by Western blot and cross-adsorption studies. Sixty-three persons (22%) had antibodies against R. typhi. The murine typhus seroprevalence rates have significantly increased in homeless populations between the 2000-2003 and 2010-2011 periods. These findings indicate that the homeless are increasingly exposed to flea-borne murine typhus in Marseilles. One might suggest that multiple strikes of sanitation workers resulting in the increase of waste and construction sites combined with the poor living conditions of the homeless expose this population to rodents and their fleas. Further annual studies are necessary to follow rodent-associated diseases among homeless people in Marseille.  相似文献   

Molecular typing of Mycoplasma agalactiae: tracing European-wide genetic diversity and an endemic clonal population     

Nouvel LX  Marenda MS  Glew MD  Sagné E  Giammarinaro P  Tardy F  Poumarat F  Rosengarten R  Citti C 《Comparative immunology, microbiology and infectious diseases》2012,35(5):487-496

Mycoplasma agalactiae causes chronic infections in small ruminants and remains endemic in many regions of the world, despite intensive and costly eradication programs. In this study, the innate genomic plasticity of M. agalactiae was exploited to design and assess a combination of molecular epidemiological tools to trace the pathogen in different geographic locations and to understand its emergence or re-emergence after eradication campaigns. For this purpose, two collections of M. agalactiae isolates, representing European outbreaks or localized endemic disease in a single region of France, were subjected to RFLP (Restriction Fragment Length Polymorphism) analyses using two sets of DNA probes (distributed across the genome and specific for the vpma gene locus), and a previously described VNTR (Variable Number Tandem Repeats) analysis. A combination of four genome-specific DNA probes and two VNTRs gave the highest discriminative power. Molecular typing revealed that, while isolates from diverse geographical origins fell into clearly different groups, the endemic disease repeatedly observed in the Western Pyrenees region over the past 30 years has been caused by a unique subtype of M. agalactiae. This indicates that the re-emergence of the pathogen after seemingly successful eradication programs is not due to the importation of exotic strains, but to the persistence of local reservoirs of infection.  相似文献   

A common near infrared—based partial least squares regression model for the prediction of wood density of Pinus pinaster and Larix?×?eurolepis     

Ana Alves  Antonio Santos  Philippe Rozenberg  Luc E. Paques  Jean-Paul Charpentier  Manfred Schwanninger  José Rodrigues 《Wood Science and Technology》2012,46(1-3):157-175

Wood density is defined as the ratio of mass to volume and therefore in principle it should be possible to calculate a unique partial least squares regression (PLS-R) model for several species. PLS-R models for wood density based on X-ray microdensity data were calculated for each species Pinus pinaster and Larix × eurolepis and for both species together. After cross-validation and test set validation the data sets were combined and final models were calculated. The common model gave a residual prediction deviation (RPD) of 3.1, a range error ratio (RER) of 11.7, and a SEP/SEC of 1.06. The single models for Pinus pinaster and Larix?×?eurolepis gave RPD’s of 3.5 and 3.2, RER’s of 13 and 11, and a SEP/SEC of 1.2. To the best knowledge of the authors all obtained PLS-R models are the first ones that fulfil the requirements according to AACC Method 39-00 (AACC in AACC Method, 39-00:15, 1999) to be used at least for screening (RPD?≥?2.5). Although this method and the defined limits were developed for the analysis of grains they can be used as a rough rule of thumb until limits for wood are available. The improvement of the PLS-R models, compared to published results, might be due to three facts (1) the higher number of scans collected for a single spectrum, (2) that the samples were better represented by the NIR spectra and X-ray microdensity values, and (3) that the sites for the measurement of NIR spectra and X-ray microdensity were coincided as strictly as possibly.  相似文献   

Clinical utility of a complete diagnostic protocol for the ocular evaluation of free-living raptors     

Labelle AL  Whittington JK  Breaux CB  Labelle P  Mitchell MA  Zarfoss MK  Schmidt SA  Hamor RE 《Veterinary ophthalmology》2012,15(1):5-17

Objective: To describe a protocol for the examination of free‐living raptors and report the ophthalmic examination findings of seven raptor species native to central Illinois, namely the barred owl, Cooper’s hawk, eastern screech owl, great horned owl, American kestrel, red‐tailed hawk, and turkey vulture and to determine if the findings relative to visual prognosis affected eligibility for future release. Animals studied: Seventy‐nine free‐living raptors. Procedures: Under manual restraint, complete ophthalmic examination including slit‐lamp biomicroscopy and indirect funduscopy, applanation tonometry, rebound tonometry, ocular morphometrics, B‐mode ultrasound, and electroretinography (ERG) were performed on each bird. Histopathology of enucleated globes was performed after euthanasia or death in selected cases. Results: The examination protocol was easily performed using manual restraint alone on all birds. Ocular lesions were detected in 48.1% of birds, with 47.3% affected unilaterally and 52.6% affected bilaterally. Ocular lesions were considered to be vision threatening in 29.0% of the unilaterally affected birds and 29.0% of the bilaterally affected birds. The most common case outcomes were discharge from hospital to rehabilitation facility (45.6%) followed by euthanasia (43.0%). The presence of an ocular lesion or a vision‐threatening ocular lesion was not significantly associated with outcome. Reference ranges are reported for B‐mode ultrasound, ocular morphometrics, and horizontal corneal diameter in all species. Conclusion: Complete ophthalmic examination can be supplemented by the use of ocular morphometrics, ultrasound, and ERG in the manually restrained raptor. These advanced diagnostic techniques may be useful in developing more objective criteria for evaluating eligibility for release following rehabilitation of free‐living birds of prey.  相似文献   

Modeling of light transmission under heterogeneous forest canopy: an appraisal of the effect of the precision level of crown description     

David Da Silva  Philippe Balandier  Frédéric Boudon  André Marquier  Christophe Godin 《Annals of Forest Science》2012,69(2):181-193

• Context  

Light availability in forest understory is essential for many processes; it is, therefore, a valuable information regarding forest management. However, its estimation is often difficult and direct measurements are tedious. Models can be used to compute understory light, but they often require a lot of field data to accurately predict light distribution, particularly in the case of heterogeneous canopies.  相似文献   

Solid-Phase Extraction Embedded Dialysis (SPEED), an Innovative Procedure for the Investigation of Microbial Specialized Metabolites     

Phuong-Y. Mai  Graldine Le Goff  Erwan Poupon  Philippe Lopes  Xavier Moppert  Bernard Costa  Mehdi A. Beniddir  Jamal Ouazzani 《Marine drugs》2021,19(7)

Solid-phase extraction embedded dialysis (SPEED technology) is an innovative procedure developed to physically separate in-situ, during the cultivation, the mycelium of filament forming microorganisms, such as actinomycetes and fungi, and the XAD-16 resin used to trap the secreted specialized metabolites. SPEED consists of an external nylon cloth and an internal dialysis tube containing the XAD resin. The dialysis barrier selects the molecular weight of the trapped compounds, and prevents the aggregation of biomass or macromolecules on the XAD beads. The external nylon promotes the formation of a microbial biofilm, making SPEED a biofilm supported cultivation process. SPEED technology was applied to the marine Streptomyces albidoflavus 19-S21, isolated from a core of a submerged Kopara sampled at 20 m from the border of a saltwater pond. The chemical space of this strain was investigated effectively using a dereplication strategy based on molecular networking and in-depth chemical analysis. The results highlight the impact of culture support on the molecular profile of Streptomyces albidoflavus 19-S21 secondary metabolites.  相似文献   

Effect of spatial scale of soil data on estimates of soil ecosystem services: Case study in 100 km2 area in France     

Ottone Scammacca  Ophélie Sauzet  Joel Michelin  Pauline Choquet  Patricia Garnier  Benoit Gabrielle  Philippe C. Baveye  David Montagne 《European Journal of Soil Science》2023,74(2):e13359

Over the last decade, the ecosystem services (ESs) framework has been increasingly used to support mapping and assessment studies for sustainable land management purposes. Previous analysis of practical applications has revealed the significance of the spatial scale at which input data are obtained. This issue is particularly problematic with soil data that are often unavailable or available only at coarse scales or resolutions in various part of the world. In this context, four soil-based ecosystem services, namely biomass provision, water provision, global climate regulation, and water quality regulation, are assessed using three conventional soil maps at the 1:1,000,000, 1:250,000 and 1:50,000 scales. The resulting individual and joint ES maps are then compared to examine the effects of changing the spatial scale of soil data on the ES levels and spatial patterns. ES levels are finally aggregated to landforms, land use, or administrative levels in order to try to identify the determinants of the sensitivity of ES levels to change in the scale of input soil data. Whereas the three soil maps turn out to be equally useful whenever ESs levels averaged over the whole 100 km² territory are needed, the maps at the 1:1,000,000 and 1:250,000 induced biases in the assessment of ESs levels over spatial units smaller than 100 and 10 km², respectively. The simplification of the diversity and spatial distribution of soils at the two coarsest scales indeed resulted in local differences in ES levels ranging from several 10 to several 100%. Identification of the optimal representation of soil diversity and distribution to obtain a reliable representation of ESs spatial distribution is not straightforward. The ESs sensitivity to scale effect is indeed context-specific, variable among individual ESs, and not directly or simply linked with the soil typological diversity represented in soil maps. Forested and natural lands in the study area appear particularly sensitive to soil data scales as they occupy marginal soils showing very specific ESs signatures.  相似文献   

Electrophysiological Evaluation of Pacific Oyster (Crassostrea gigas) Sensitivity to Saxitoxin and Tetrodotoxin     

Floriane Boullot  Caroline Fabioux  Hlne Hgaret  Pierre Boudry  Philippe Soudant  Evelyne Benoit 《Marine drugs》2021,19(7)

Pacific oysters (Crassostrea gigas) may bio-accumulate high levels of paralytic shellfish toxins (PST) during harmful algal blooms of the genus Alexandrium. These blooms regularly occur in coastal waters, affecting oyster health and marketability. The aim of our study was to analyse the PST-sensitivity of nerves of Pacific oysters in relation with toxin bio-accumulation. The results show that C. gigas nerves have micromolar range of saxitoxin (STX) sensitivity, thus providing intermediate STX sensitivity compared to other bivalve species. However, theses nerves were much less sensitive to tetrodotoxin. The STX-sensitivity of compound nerve action potential (CNAP) recorded from oysters experimentally fed with Alexandrium minutum (toxic-alga-exposed oysters), or Tisochrysis lutea, a non-toxic microalga (control oysters), revealed that oysters could be separated into STX-resistant and STX-sensitive categories, regardless of the diet. Moreover, the percentage of toxin-sensitive nerves was lower, and the STX concentration necessary to inhibit 50% of CNAP higher, in recently toxic-alga-exposed oysters than in control bivalves. However, no obvious correlation was observed between nerve sensitivity to STX and the STX content in oyster digestive glands. None of the nerves isolated from wild and farmed oysters was detected to be sensitive to tetrodotoxin. In conclusion, this study highlights the good potential of cerebrovisceral nerves of Pacific oysters for electrophysiological and pharmacological studies. In addition, this study shows, for the first time, that C. gigas nerves have micromolar range of STX sensitivity. The STX sensitivity decreases, at least temporary, upon recent oyster exposure to dinoflagellates producing PST under natural, but not experimental environment.  相似文献