Purpose

Thaumarchaeota is an ecologically relevant archaeal phylum which may significantly contribute to global nitrogen cycling. Thaumarchaeotal abundance, composition, and activity can be changed by soil pH and pollutants such as toxic metals. This study aims to examine the responses of thaumarchaeotal community to soil pH variation and polycyclic aromatic hydrocarbon (PAH) pollution which may co-occur in agricultural soils.

Materials and methods

Field soil samples were collected from agricultural land impacted by both acidification and PAH contamination. Thaumarchaeotal abundance and composition were assessed using molecular approaches targeting 16S rRNA or amoA genes and were linked to environmental factors by correlation and canonical correspondence analysis (CCA). To evaluate the short-term responses of Thaumarchaeota to PAHs, additional soil microcosms amended with either three selected PAHs were established. Changes in thaumarchaeotal communities during the incubation were monitored.

Results and discussion

A significant correlation between thaumarchaeotal gene abundance and soil pH was observed within field samples, with the I.1a-associated group enriched when pH <5.0. CCA suggests that the community variation was primarily related to soil pH. In contrast, the effects of PAHs were minimal. In soil microcosms, high concentrations of PAHs persisted after the 4-week incubation. Independent of the PAHs added, thaumarchaeotal amoA abundance slightly increased and the compositions were stable at the end of the incubation. This might be associated with the pollutants bioavailability and potential microbe-PAH interactions in the soil.

Conclusions

Soil pH variation strongly shapes the agricultural soil thaumarchaeotal community, whereas PAH effects appear to be marginal even in the presence of high concentrations of pollutants. The complicated interaction between soil matrix, pollutants, and Thaumarchaeota requires further study.

Purpose

At the global scale, gardening activities are often performed in urban areas with a historical background of pollution. In this study, a participatory program was developed with citizens concerned by gardening activities near a 50-year-old regulated lead recycling company, with the aim of co-constructing the tools for the assessment and management of potential sanitary risks induced by historic pollution with persistent (eco) toxic metals: lead and cadmium.

Materials and methods

Soils and vegetables (lettuce, leek, celery, carrot, chard, pumpkin, and celeriac) samples were collected from four kitchen gardens neighboring a 50-year-old secondary lead smelter. Both total and in vitro human bioaccessible metal concentrations in the cultivated plants were measured in relation to soil characteristics.

Results and discussion

The results showed that the soils of these gardens were slightly contaminated by metals (Pb, 77 to 236 mg kg^?1; and Cd, 0.5 to 1 mg kg^?1) in comparison with the natural geologic background. However, significant pollution of vegetables can occur especially with lead (Pb up to 9.8 mg kg^?1 in lettuce) and certainly as a result of direct foliar transfer. The washing of plants before consumption is therefore recommended in the context of atmospheric fallout of ultrafine particles enriched with metals.

Conclusions

Metal bioaccessibility measure integrates the influence of metal type, plant type, and soil physico-chemical properties. Based on the results, it is proposed that human bioaccessible fraction of metals may also be currently taken into account as well as total metal quantities and bioaccumulation factors in risk assessment studies performed in gardens. Overall, this study has led to reflections and functional recommendations aimed at reducing human exposure and to finally developing sustainable gardening practices.

Purpose

The present paper concerns the distribution and mobility of heavy metals (Cu, Pb, Zn and Fe) in the soils of some abandoned mine sites in Italy and their transfer to wild flora.

Materials and methods

Soils and plants were sampled from mixed sulphide mine dumps in different parts of Italy, and the concentrations of heavy metals were determined.

Results and discussion

The phytoremediation ability of Salix species (Salix eleagnos, Salix purpurea and Salix caprea), Taraxacum officinale and P?lantago major for heavy metals and, in particular, zinc was estimated. The results showed that soils affected by mining activities presented total Zn, Cu, Pb and Fe concentrations above the internationally recommended permissible limits. A highly significant correlation occurred between metal concentrations in soils.

Conclusions

The obtained results confirmed the environmental effects of mine waste; exploring wild flora ability to absorb metals, besides metal exploitation, proved a useful tool for planning possible remediation projects.

Purpose

The main objectives of the study were to (1) develop a one-step facile procedure for synthesizing a new chemical amendment agent with three chelating groups for solidifying multiple heavy metals, called sixthio guanidine acid (SGA), using guanidine hydrochloride and carbon disulfide as raw reactants and (2) assess its biodegradability, solidification effectiveness, and leachability in remedying soils contaminated with multiple heavy metals of various concentrations compared with other traditional amendment agents.

Materials and methods

Polluted soil samples were collected near a metalliferous mining site of Qixiashan in the southeast of Nanjing, China. Their concentrations were determined at 22.15–320 mg kg^?1 for As, 3.30–29.31 mg kg^?1 for Cd, 115.66–158.65 mg kg^?1 for Ni, 165.04–1677.06 mg kg^?1 for Pb, and 355.6–2426.91 mg kg^?1 for Zn. Biodegradability of SGA was assessed in accordance with GB/T 21831-2008 and OECD-301D. Total concentration of heavy metals was determined according to ISO11466:1995. A modified three-step sequential Community Bureau of Reference (BCR) extraction procedure was used to examine speciation of heavy metals in the soil sample, and concentrations of heavy metals were measured by using inductively coupling plasma optical emission spectrometry (ICP-OES). Leachate extraction tests were carried out before and after the soil sample was solidified with different amendments in accordance with HJ/T 557-2009.

Results and discussion

It is found that the optimal conditions for SGA synthesis are a molar ratio of 4:1, a reaction temperature of 40 °C, and a reaction time of 2 h. Under such conditions, SGA yield is achieved as high as 91.5 %. The bioavailability and mobility of As, Cd, Ni, Pb, and Zn in highly contaminated soils can be reduced via using SGA. Our results indicate that SGA is nonbiodegradative and much more effective than other traditional chemical amendment agents in that it is highly effective in comprehensively solidifying As, Cd, Ni, and Pb.

Conclusions

SGA has the potential for comprehensive in situ remediation of soils contaminated with several heavy metal elements of various concentration levels, and such findings may be used as a guide to design new chemical amendment agents for rehabilitating soils contaminated with heavy metals.

Purpose

Soil microorganisms are important in the cycling of plant nutrients. Soil microbial biomass, community structure, and activity are mainly affected by carbon substrate and nutrient availability. The objective was to test if both the overall soil microbial community structure and the community-utilizing plant-derived carbon entering the soil as rhizodeposition were affected by soil carbon (C) and nitrogen (N) availability.

Materials and methods

A ¹³C-CO₂ steady-state labeling experiment was conducted in a ryegrass system. Four soil treatments were established: control, amendment with carboxymethyl cellulose (CMC), amendment with ammonium nitrate (NF), combined CMC and NF. Soil phospholipid fatty acid (PLFA) and ¹³C labeling PLFA were extracted and detected by isotope ratio mass spectrometer.

Results and discussion

The combined CMC and NF treatment with appropriate C/N ratio (20) significantly enhanced soil microbial biomass C and N, but resulted in lower soil inorganic N concentrations. There was no significant difference in soil PLFA profile pattern between different treatments. In contrast, most of the ¹³C was distributed into PLFAs 18:2ω6,9c, 18:1ω7c, and 18:1ω9c, indicative of fungi and gram-negative bacteria. The inorganic-only treatment was distinct in ¹³C PLFA pattern from the other treatments in the first period of labeling. Factor loadings of individual PLFAs confirmed that gram-positive bacteria had relatively greater plant-derived C contents in the inorganic-only treatment, but fungi were more enriched in the other treatments.

Conclusions

Amendments with CMC can improve N transformation processes, and the ryegrass rhizodeposition carbon flux into the soil microbial community is strongly modified by soil N availability.

Purpose

The validity of soil erosion data is often questioned because of the variation between replicates. This paper aims to evaluate the relevance of interreplicate variability to soil and soil organic carbon (SOC) erosion over prolonged rainfall.

Materials and methods

Two silty loams were subjected to simulated rainfall of 30 mm h^?1 for 360 min. The entire rainfall event was repeated ten times to enable statistical analysis of the variability of the runoff and soil erosion rates.

Results and discussion

The results show that, as selective removal of depositional particles and crust formation progressively stabilized the soil surface, the interreplicate variability of runoff and soil erosion rates declined considerably over rainfall time. Yet, even after the maximum runoff and erosion rates were reached, the interreplicate variability still remained between 15 and 39 %, indicating the existence of significant inherent variability in soil erosion experiments.

Conclusions

Great caution must be paid when applying soil and SOC erosion data after averaging from a small number of replicates. While not readily applicable to other soil types or rainfall conditions, the great interreplicate variability observed in this study suggests that a large number of replicates is highly recommended to ensure the validity of average values, especially when extrapolating them to assess soil and SOC erosion risk in the field.

Purpose

This study aims to explore the dynamics of the factors influencing soil organic carbon (SOC) sequestration and stability at erosion and deposition sites.

Materials and methods

Thermal properties and dissolved aromatic carbon concentration along with Al, Fe concentration and soil specific surface area (SSA) were studied to 1 meter depth at two contrasting sites.

Results and discussion

Fe, Al concentrations and SSA size increased with depth and were negatively correlated with SOC concentration at the erosion site (P?<?0.05), while at the deposition site, these values decreased with increasing depth and were positively correlated with SOC concentration (P?<?0.05). TG mass loss showed that SOC components in the two contrasting sites were similar, but the soils in deposition site contained a larger proportion of labile organic carbon and smaller quantities of stable organic carbon compared to the erosion site. SOC stability increased with soil depth at the erosion site. However, it was slightly variable in the depositional zone. Changes in SUVA₂₅₄ spectroscopy values indicated that aromatic moieties of DOC at the erosion site were more concentrated in the superficial soil layer (0–20 cm), but at the deposition site they changed little with depth and the SUVA₂₅₄ values less than those at the erosion site.

Conclusions

Though large amounts of SOC accumulated in the deposition site, SOC may be vulnerable to severe losses if environmental conditions become more favorable for mineralization in the future due to accretion of more labile carbon. Deep soil layers at the erosion site (>30 cm deep) had a large carbon sink potential.

Purpose

Remediate metal contamination is a fundamental step prior to reclaim oil sands tailing ponds, and copper (Cu(II)) is the most abundant metal in the tailings water or oil sands process-affected water (OSPW). Biochars produced at four pyrolysis conditions were evaluated for sorption of Cu(II) in synthetic OSPW to explore different biochar potentials in removing Cu(II) from the contaminated water.

Materials and methods

Pine sawdust biochars pyrolyzed at 300 and 550 °C with and without steam activation were investigated by batch sorption experiments. Isotherm and kinetic studies were conducted to compare the sorption capacities of the four biochars and to examine potential mechanisms involved.

Results and discussion

For all the biochars, Langmuir and pseudo-second order models were the best-fit for isotherm and kinetic studies, respectively. According to the Langmuir parameters, the maximum adsorption capacities of the biochars produced at 550 °C were around 2.5 mg Cu(II)?g^?1, which were 30-folds higher than those produced at 300 °C. However, steam activation did not cause any significant difference in the biochars’ sorption performance. The kinetic study suggested that chemisorption involving valence forces was the limiting factor of the sorption. In addition, ion exchange and precipitation were likely the primary mechanisms for Cu(II) sorption which outweigh complexation with functional groups on the biochars’ surface.

Conclusions

Pine sawdust biochar produced at 550 °C without steam activation could be utilized as a sustainable and cost-effective material to remove Cu(II) from the OSPW.

Purpose

The purpose of this study was to determine the first-order rate constants and half-lives of aerobic and anaerobic biomineralization of atrazine in soil samples from an agricultural farm site that had been previously used for mixing pesticide formulations and washing application equipment. Atrazine catabolic genes and atrazine-degrading bacteria in the soil samples were analyzed by molecular methods.

Materials and methods

Biomineralization of atrazine was measured in soil samples with a [U-ring-¹⁴C]-atrazine biometer technique in soil samples. Enrichment cultures growing with atrazine were derived from soil samples and they were analyzed for bacterial diversity by constructing 16S rDNA clone libraries and sequencing. Bacterial isolates were also obtained and they were screened for atrazine catabolic genes.

Results and discussion

The soils contained active atrazine-metabolizing microbial communities and both aerobic and anaerobic biomineralization of [U-ring-¹⁴C]-atrazine to ¹⁴CO₂ was demonstrated. In contrast to aerobic incubations, anaerobic biometers displayed considerable differences in the kinetics of atrazine mineralization between duplicates. Sequence analysis of 16S rDNA clone libraries constructed from the enrichment cultures revealed a preponderance of Variovorax spp. (51 %) and Schlesneria (16 %). Analysis of 16S rRNA gene sequences from pure cultures (n?=?12) isolated from enrichment cultures yielded almost exclusively Arthrobacter spp. (83 %; 10/12 isolates). PCR screening of pure culture isolates for atrazine catabolic genes detected atzB, atzC, trzD, trzN, and possibly atzA. The presence of a complete metabolic pathway was not demonstrated by the amplification of catabolic genes among these isolates.

Conclusions

The soils contained active atrazine-metabolizing microbial communities. The anaerobic biometer data showed variable response of atrazine biomineralization to external electron acceptor conditions. Partial pathways are inevitable in soil microbial communities, with metabolites linking into other catabolic and assimilative pathways of carbon and nitrogen. There was no evidence for the complete set of functional genes of the known pathways of atrazine biomineralization among the isolates.

Purpose

The application of bio-fertilizers is one of the management practices that can help to maintain or increase the content of organic matter (OM) and improve soil fertility in arable soils. While some results have been obtained in relation to the influence of bio-fertilizers on organic matter content, less in known about the fractional composition of humus.

Materials and methods

The aim of this study was to determine the effects of the bio-fertilizer UGmax on soil total organic carbon (TOC), dissolved organic carbon (DOC), and the fractional composition of organic matter (C of humic acids (CHAs), C of fulvic acids (CFAs), and C in humins) in the humus horizon of an arable field. Measurements were taken in 2005 before the application of UGmax and in 2008, 3 years after its application, which was done in 2005, 2006, and 2007. Forty soil samples were taken in 2005 (the control year without UGmax), while 20 samples were taken after UGmax treatment and 20 from the control in 2008. Samples were always collected after the plants were harvested.

Results and discussion

After the 3-year period of the experiment, the TOC content was 6.3 % higher in plots on which UGmax was applied in comparison to the control, while the DOC content was 0.19 percentage points lower after 3 years of bio-fertilizer use as compared to the initial year of the experiment. The contribution of DOC to TOC decreased significantly after the application of UGmax in comparison with the control. The content of CFAs and its contribution in the TOC pools in soil without UGmax was higher at the end of the experiment compared to the beginning, while there was an inverse relationship in the soil with the bio-fertilizer. In comparison with the control, organic matter in the soil treated with UGmax had a higher content of C of humic acids, C in humins, and higher CHAs/CFAs ratio.

Conclusions

We conclude that the use of a bio-fertilizer that increases the stable fractions of organic matter provides evidence of an increase in the soil OM stability. In turn, the contribution of the organic matter fractions that are more resistant to decomposition is crucial for increasing soil carbon sequestration.