Testing assumptions of cost surface analysis—a tool for invasive species management   总被引：1，自引：0，他引：1  

Emily K. Gonzales  Sarah E. Gergel 《Landscape Ecology》2007,22(8):1155-1168

Applied ecology could benefit from new tools that identify potential movement pathways of invasive species, particularly where data are sparse. Cost surface analysis (CSA) estimates the permeability (friction) across a landscape and can be applied to dispersal modelling. Increasingly used in a diversity of applications, several fundamental assumptions that might influence the outputs of CSA (cost surfaces and least-cost pathways) have yet to be systematically examined. Thus, we explore two issues: the presumed relationship between habitat preferences and dispersal behaviour as well as the degree of landscape fragmentation through which an organism moves by modelling a total of 18 sensitivity and dispersal scenarios. We explored the effect of fragmentation by altering the friction values (generally assigned using expert opinion) associated with patch and linear features. We compared these sensitivity scenarios in two sites that differed in fragmentation. We also used eastern grey squirrels (Sciurus carolinensis) as an example invading species and compared diffusion models and two contrasting cost surface dispersal scenarios. The diffusion model underestimated spread because squirrels did not move randomly through the landscape. Despite contrasting assumptions regarding dispersal behaviour, the two cost surfaces were strikingly similar while the least-cost paths differed. Furthermore, while the cost surfaces were insensitive to changes in friction values for linear features, they were sensitive to assumptions made for patch features. Our results suggest that movement in fragmented landscapes may be more sensitive to assumptions regarding friction values than contiguous landscapes. Thus, the reliability of CSA may depend not only on the range of friction values used for patches but also the degree of contiguity in the landscape.  相似文献   

Empirical relationships between land use/cover and estuarine condition in the Northeastern United States   总被引：1，自引：0，他引：1  

Wilfrid Rodriguez  Peter V. August  Yeqiao Wang  John F. Paul  Arthur Gold  Norman Rubinstein 《Landscape Ecology》2007,22(3):403-417

Land–water interactions were examined in three regions in the Virginian Biogeographic Province; the southern shore of Cape Cod, Massachusetts; the Hudson/Raritan region of New York; and the eastern shore of the Delmarva (Delaware/Maryland/Virginia) Peninsula. Cumulative distribution functions were used to evaluate similarity in environmental condition among estuaries. Spatial-setting variables (location in a river, coastal lagoon, or in open waters) were associated with variation for some measures of estuarine condition. Patterns of coastal urban and agriculture gradients were measured and their relationship with indicators of estuarine condition was modeled statistically. When estuaries were pooled, the highest variation explained by spatial-setting variables was found for dissolved oxygen (DO, R ² = 0.44) and salinity (R ² = 0.58), with DO decreasing in river locations and salinity decreasing with rainfall and sampling locations near rivers. The explanatory power for the other indicator variables was low and varied from 6% to 27%. Rainfall explained some of the variation (R ² = 0.23) in total suspended solids. Moderate (0.4 < | r | < 0.7) to strong (| r | ≥ 0.7) linear associations were found between total urban area and measures of estuarine condition. Within regions, total urban area was positively associated with Silver (r = 0.59), Cadmium (r = 0.65), and Mercury (r = 0.47) in Cape Cod, and inversely related to DO (r = −0.65) in the Hudson/Raritan region. No associations were found in the Delmarva Peninsula study area. Total area of agriculture showed a moderate association with Arsenic in Cape Cod, but no other associations were found in the other two regions. Our analyses show a measurable impact of urban land use on coastal ecosystem condition over large areas of the northeastern United States. This pattern was most evident when many different landscapes were considered simultaneously. The relationship between urban development and estuarine condition were weaker within the individual regions studied. The use of land use/cover models for predicting estuarine condition is a challenging task that warrants enhancements in the type, quantity, and quality of data to improve our ability to discern relationships between anthropogenic activities on land and the condition of coastal environments.  相似文献   

Habitat selection and breeding success in a forest-nesting Alcid,the marbled murrelet,in two landscapes with different degrees of forest fragmentation     

Yuri Zharikov  David B. Lank  Falk Huettmann  Russell W. Bradley  Nadine Parker  Peggy P.-W. Yen  Laura A. Mcfarlane-Tranquilla  Fred Cooke 《Landscape Ecology》2007,22(5):791-791

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Multi-scale study of bird species distribution and of their response to vegetation change: a Mediterranean example     

Audrey Coreau  Jean-Louis Martin 《Landscape Ecology》2007,22(5):747-764

Land use changes operate at different scales. They trigger a cascade of effects that simultaneously modify the composition or structure of the landscape and of the local vegetation. Mobil animals, and birds in particular, can respond quickly to such multi-scalar changes. We took advantage of a long term study on the response of songbirds to land-use changes on four Mediterranean islands in Corsica and Sardinia to explore the benefits of a multi-scale analysis of the relationships between songbird distribution, vegetation structure and landscape dynamics. Field data and aerial photographs were used to describe the vegetation at three different scales. Birds were censused by point counts. We used statistical variance decomposition to study how bird distribution and vegetation at various scales were linked. We analysed multi-scale vegetation changes (floristic composition, plot vegetation type, and landscape structure) and their consequences on bird distribution with multivariate and non-parametrical tests. The distribution of most species was linked to at least two spatial scales. The weight of a given scale was consistent with life-history traits for species whose biology was well-known. In the examples studied, vegetation composition, vegetation type and landscape changes that resulted from land abandonment negatively affected birds depending on open or heterogeneous areas. Our results emphasize that multi-scale analyses can greatly enhance our understanding of bird distribution and of their changes. Management of these populations should take into account measures at various spatial scales depending on the sensitivity of the species.  相似文献   

Nancy Jack Todd,A Safe and Sustainable World: The Promise of Ecological Design     

Anantha Prasad 《Landscape Ecology》2007,22(6):957-958

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Protocol: a highly sensitive RT-PCR method for detection and quantification of microRNAs   总被引：5，自引：0，他引：5  

Erika Varkonyi-Gasic  Rongmei Wu  Marion Wood  Eric F Walton  Roger P Hellens 《Plant methods》2007,3(1):12

MicroRNAs (miRNAs) are a class of small non-coding RNAs with a critical role in development and environmental responses. Efficient and reliable detection of miRNAs is an essential step towards understanding their roles in specific cells and tissues. However, gel-based assays currently used to detect miRNAs are very limited in terms of throughput, sensitivity and specificity. Here we provide protocols for detection and quantification of miRNAs by RT-PCR. We describe an end-point and real-time looped RT-PCR procedure and demonstrate detection of miRNAs from as little as 20 pg of plant tissue total RNA and from total RNA isolated from as little as 0.1 μl of phloem sap. In addition, we have developed an alternative real-time PCR assay that can further improve specificity when detecting low abundant miRNAs. Using this assay, we have demonstrated that miRNAs are differentially expressed in the phloem sap and the surrounding vascular tissue. This method enables fast, sensitive and specific miRNA expression profiling and is suitable for facilitation of high-throughput detection and quantification of miRNA expression.  相似文献   

M.E. Benedict and E.T. McMahon,Green Infrastructure: Linking Landscapes and Communities     

Carmela Canzonieri 《Landscape Ecology》2007,22(5):797-798

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A theory greyer than grey     

Mohan K. Wali 《Landscape Ecology》2007,22(2):319-322

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Occurrence of chrysanthemum virescence caused by “<Emphasis Type="Italic">Candidatus</Emphasis> Phytoplasma aurantifolia” in Okinawa     

Takashi Naito  Minoru Tanaka  Satoshi Taba  Tesuya Toyosato  Atsushi Oshiro  Kazuko Takaesu  Kazuo Hokama  Tomio Usugi  Shinji Kawano 《Journal of General Plant Pathology》2007,73(2):139-141

In 1999, a disease of chrysanthemum [Dendranthema grandiflorum (Ramat.) Kitamura], characterized by virescence of flowers, occurred in Okinawa Prefecture. The causal agent was identified as “Candidatus Phytoplasma aurantifolia” based on 16S rDNA sequencing. The nucleotide sequence data reported are available in the DDBJ/EMBL/GenBank databases under accession number AB247462.  相似文献   

Parasitism of <Emphasis Type="Italic">Trichoderma</Emphasis> on <Emphasis Type="Italic">Meloidogyne javanica</Emphasis> and role of the gelatinous matrix     

Edna Sharon  Ilan Chet  Ada Viterbo  Meira Bar-Eyal  Harel Nagan  Gary J. Samuels  Yitzhak Spiegel 《European journal of plant pathology / European Foundation for Plant Pathology》2007,118(3):247-258

Trichoderma (T. asperellum-203, 44 and GH11; T. atroviride-IMI 206040 and T. harzianum-248) parasitism on Meloidogyne javanica life stages was examined in vitro. Conidium attachment and parasitism differed beween the fungi. Egg masses, their derived eggs and second-stage juveniles (J2) were parasitized by Trichoderma asperellum-203, 44, and T. atroviride following conidium attachment. Trichoderma asperellum-GH11 attached to the nematodes but exhibited reduced penetration, whereas growth of T. harzianum-248 attached to egg masses was inhibited. Only a few conidia of the different fungi were attached to eggs and J2s without gelatinous matrix; the eggs were penetrated and parasitized by few hyphae, while J2s were rarely parasitized by the fungi. The gelatinous matrix specifically induced J2 immobilization by T. asperellum-203, 44 and T. atroviride metabolites that immobilized the J2s. A constitutive-GFP-expressing T. asperellum-203 construct was used to visualize fungal penetration of the nematodes. Scanning electron microscopy revealed the formation of coiling and appressorium-like structures upon attachment and parasitism by T. asperellum-203 and T. atroviride. Gelatinous matrix agglutinated T. asperellum-203 and T. atroviride conidia, a process that was Ca²⁺-dependent. Conidium agglutination was inhibited by carbohydrates, including fucose, as was conidium attachment to the nematodes. All but T. harzianum could grow on the gelatinous matrix, which enhanced conidium germination. A biomimetic system based on gelatinous-matrix-coated nylon fibers demonstrated the role of the matrix in parasitism: T. asperellum-203 and T. atroviride conidia attached specifically to the gelatinous-matrix-coated fibers and parasitic growth patterns, such as coiling, branching and appressoria-like structures, were induced in both fungi, similarly to those observed during nematode parasitism. All Trichoderma isolates exhibited nematode biocontrol activity in pot experiments with tomato plants. Parasitic interactions were demonstrated in planta: females and egg masses dissected from tomato roots grown in T. asperellum-203-treated soil were examined and found to be parasitized by the fungus. This study demonstrates biocontrol activities of Trichoderma isolates and their parasitic capabilities on M. javanica, elucidating the importance of the gelatinous matrix in the fungal parasitism.  相似文献