A high-throughput glasshouse bioassay to detect crown rot resistance in wheat germplasm   总被引：3，自引：0，他引：3  

V. Mitter  M. C. Zhang  C. J. Liu  R. Ghosh  M. Ghosh  S. Chakraborty 《Plant pathology》2006,55(3):433-441

A high-throughput and reliable seedling bioassay to screen wheat germplasm for crown rot resistance was developed. Single wheat seedlings were grown in square seedling punnets in a glasshouse and inoculated with a monoconidial Fusarium pseudograminearum isolate 10 days after emergence. The punnets were laid horizontally on their side and a 10- µ L inoculum droplet placed on the stem base. Seedlings were incubated at near-saturated relative humidity, and crown rot severity was assessed 35 days after inoculation. Studies on the duration of incubation period, inoculum concentration and temperature were carried out to optimize these parameters. Seedling growth at 25/15(±5)°C in a glasshouse and 48-h incubation at near-saturated RH in darkness gave the best results. When crown rot resistance rankings of 16 Australian cultivars from the bioassay were compared with their field performance, Spearman's rank correlation coefficient was highly significant. This indicated that the seedling bioassay mimicked field resistance to crown rot in adult plants. A bootstrap resampling analysis showed little or no improvement in the coefficient of variation with an increasing number of replications, indicating a high level of precision and reproducibility. By detecting small but consistent differences in crown rot severity, the bioassay proved effective in large-scale screening for partial resistance: already over 1400 wheat genotypes have been screened. The high degree of precision makes this an invaluable tool in the understanding of pathogen aggressiveness, host specialization and parasitic fitness.  相似文献   

Genetic diversity of Australian Fusarium graminearum and F. pseudograminearum     

O. A. Akinsanmi †  D. Backhouse  S. Simpfendorfer  S. Chakraborty 《Plant pathology》2006,55(4):494-504

Genotypic diversity in Fusarium pseudograminearum and F. graminearum from Australia and the relationship between diversity and pathogen aggressiveness for head blight and/or crown rot of wheat were examined. Amplified fragment length polymorphism (AFLP) analysis revealed a high level of genotypic diversity within each species. Sixty-three of the 149 AFLP loci were significantly different between the two species and 70 of 72 F. pseudograminearum and 56 of 59 F. graminearum isolates had distinct haplotypes. When head blight and crown rot severity data from a recently published work on isolates representing the entire range of aggressiveness were used, only the genotypic diversity of F. pseudograminearum was significantly associated with its aggressiveness for the two diseases. Cluster analyses clearly demonstrated the polyphyletic structures that exist in both pathogen populations. The spatial diversity within F. graminearum was high within a single field, while frequent gene flow ( N _m ∼ 14) and a low fixation index ( G _st = 0·03) were recorded among F. pseudograminearum isolates from the adjacent states of New South Wales and Queensland. The differences in population structure between the heterothallic F. pseudograminearum (teleomorph G. coronicola ) and the homothallic F. graminearum (teleomorph G. zeae ) were not as pronounced as expected given their contrasting mating systems. Neither species was panmictic or strictly clonal. This points to sexual recombination in F. pseudograminearum , suggesting that ascospores of G. coronicola may also play a role in its biology and epidemiology.  相似文献   

Eicosapentaenoic acid enrichment from sardine oil by argentation chromatography     

Chakraborty K  Raj RP 《Journal of agricultural and food chemistry》2007,55(18):7586-7595

Eicosapentaenoic acid (EPA) derived from chemically hydrolyzed sardine oil was concentrated by urea fractionation using methanol at different temperatures (2, 4, and 6 degrees C) and urea/fatty acid ratios (2:1, 3:1, and 4:1 w/w) and purified by argentation neutral alumina column chromatography. The individual fatty acids were determined as fatty acid methyl esters (FAME) by gas-liquid chromatography and gas chromatography-mass spectroscopy as FAME and N-acyl pyrrolidides. In the mass fragmentation pattern of FAME, the base peak was assigned to be the 1-methoxyethenol moiety (m/z = 74) obtained by McLafferty rearrangement. Formation of the cyclic tropylium ion (m/z = 91) in fatty acids with four or more double bonds was apparent in FAME-PUFAs. The base peak of N-acyl pyrrolidides was the McLafferty rearrangement ion, 1-(pyrrolidin-1-yl)ethenol (m/z = 113). The highest concentration of EPA (47.78%) was obtained at the crystallization temperature of 4 degrees C with a urea/fatty acid ratio of 4:1 (w/w) with 93.74% yield. After complexation of saturated and less unsaturated fatty acids by urea complexation, argentation chromatography resulted in an EPA of high purity (99.6%) with an overall recovery of 54.09% using 50% diethyl ether/n-hexane as eluting solvent. The peroxide (POV) and thiobarbituric acid (TBS) values were found to be highest (4.0 mequiv of O2/kg and 5.2 mg of malondialdehyde/kg, respectively) during urea fractionation at the higher crystallization temperature (6 degrees C) and higher urea/fatty acid ratio (4:1). Keywords: Sardine oil; eicosapentaenoic acid (EPA); fatty acid methyl esters (FAME); urea fractionation; argentation column chromatography.  相似文献   

Metabolism of metamitron in goat following a single oral administration of a nontoxic dose level: a continued study     

Chanda D  Debnath SC  Das SK  Mandal TK  Bhattacharyya A  Choudhury A  Chakraborty AK 《Journal of agricultural and food chemistry》2004,52(24):7377-7381

Disposition kinetic behavior and metabolism studies of metamitron and its metabolite in terms of the parent compound were carried out in black Bengal goats after a single oral administration of a nontoxic oral dose at 30 mg kg(-1) of body weight. Metamitron was detected in the blood sample at 5 min (2.23 +/- 0.04 microg mL(-1)), maximum at 1 h (3.43 +/- 0.02 microg mL(-1)) and minimum at 12 h (0.41 +/- 0.01 microg mL(-1)), after a single oral administration. Metabolite [3-methyl-6-phenyl-1,2,4-triazin-5(4H)-one] in terms of the parent compound was detected in the blood sample at 5 min (0.47 +/- 0.006 microg mL(-1)), maximum at 6 h (5.12 +/- 0.02 microg mL(-1)) and minimum at 96 h (1.06 +/- 0.016 microg mL(-1)), after a single oral administration. The t(1/2 K) and Cl(B) values of metamitron were 3.63 +/- 0.05 h and 1.36 +/- 0.016 L kg(-1) h(-1), respectively, whereas the t(1/2K)(m) and Cl(B)(m) values of the metabolite were 38.15 +/- 0.37 h and 0.091 +/- 0.001 L kg(-1) h(-1), respectively, which suggested long persistence of the metabolite in blood and tissues of goat. Metamitron was excreted through feces and urine for up to 48 and 72 h, whereas the metabolite was excreted for up to 168 and 144 h, respectively. Metabolite alone contributed to 96 and 67% of combined recovery percentage of metamitron and metabolite against the administered dose in feces and urine of goat, respectively. All of the goat tissues except lung, adrenal gland, ovary, testis, and mammary gland retained the metabolite residue for up to 6 days after administration.  相似文献   

Rust-proofing wheat for a changing climate     

Sukumar Chakraborty  Jo Luck  Grant Hollaway  Glenn Fitzgerald  Neil White 《Euphytica》2011,179(1):19-32

This paper offers projections of potential effects of climate change on rusts of wheat and how we should factor in a changing climate when planning for the future management of these diseases. Even though the rusts of wheat have been extensively studied internationally, there is a paucity of information on the likely effects of a changing climate on the rusts and their influence on wheat production. Due to the lack of published empirical research we relied on the few published studies of other plant diseases, our own unpublished work and relevant information from the vast literature on rusts of wheat to prepare this overview. Three broad areas of potential risks from a changing climate were described: increased loss from wheat rusts, new rust pathotypes evolving faster and the reduced effectiveness of rust resistances. Increased biomass of wheat crops grown in the presence of elevated CO₂ concentrations and higher temperatures will increase the leaf area available for attack by the pathogen leading to increased inoculum production. If changed weather conditions were to accelerate the life cycle of a pathogen, the increased inoculum can lead to severe rust epidemics in many environments. Likewise should the effects of climate change result in more conducive conditions for rust development there will also be a corresponding increase in the rate of evolution of new pathotypes which could increase the rate of appearance of new virulences. The effectiveness of some rust resistance genes is influenced by temperature and crop development stage. Climate change may directly or indirectly influence the effectiveness of some resistance genes but this can not be ascertained due to a complete lack of knowledge. Since disease resistance breeding is a long term strategy it is important to determine if any of the important genes may become less effective due to climate change. Studies must be made to acquire new information on the rust disease triangle to increase the adaptive capacity of wheat under climate change. Leadership within the Borlaug Global Rust Initiative (BGRI) is needed to broker research on rust evolution and the durability of resistance under climate change.  相似文献   

Synthesis and quantitative structure-activity relationships of oxanilates as chemical hybridizing agents for wheat (Triticum aestivum L.)     

Chakraborty K  Devakumar C  Tomar SM  Kumar R 《Journal of agricultural and food chemistry》2003,51(4):992-998

Chemical hybridizing agents (CHAs) can facilitate two-line breeding in heterosis programs of crops. Twenty-seven oxanilates having different aromatic substitutions were synthesized and screened as CHAs on two genotypes of wheat, PBW 343 and HD 2733, during two Rabi (winter) seasons, 2000-01 and 2001-02. The oxanilates prepared by thermal condensation of anilines with diethyl oxalate or by acylation with ethoxycarbonyl methanoyl chloride were sprayed at 1000 and 1500 ppm at the premeiotic stage of wheat, when the length of the emerging spike of the first node was 7-8 mm. Pollen sterility and spikelet sterility were measured in each treatment. Ethyl oxanilates 5, 6, and 25,containing 4-F, 4-Br, and 4-CF(3) aromatic substituents, respectively, induced greater than 98% spikelet sterility, the desired level, at 1500 ppm. Quantitative structure-activity relationship analysis revealed a direct relationship between F(p) and molecular mass but an inverse relationship between MR, E(S), and R in influencing the bioactivity. Several F(1) hybrids were developed using 5, and at least one showed heterosis.  相似文献   

Development of Empirical Formulae to Determine Emission Rate from Various Opencast Coal Mining Operations     

Chaulya  S. K.  Chakraborty  M. K.  Ahmad  M.  Singh  R. S.  Bondyopadhay  C.  Mondal  G. C.  Pal  D. 《Water, air, and soil pollution》2002,140(1-4):21-55

All major mining activities, particularly opencast coal mining,directly or indirectly contribute to the problem of air pollution.Therefore, air quality assessment and prediction arerequired to prevent and minimize the air quality deteriorationdue to various opencast coal mining operations. Determination ofemission rates for these activities is the first and foremostconcern. In view of the above, this study was undertaken to determinate emission rates and to develop empericalformulae to calculate emission rates of various opencast coalmining activities.To achieve the objectives, seven coal mining sites were selectedto generate site-specific emission data by considering miningpractices, method of working, geographical location,accessibility and above all resourceavailability. The study covers various mining activities andlocations including drilling, overburden loading and unloading,coal loading and unloading, the coal handling plant, the exposedoverburden dump, the stock yard, the workshop, the exposed pit surface roadsand haul roads.Based on the study, a set of twelve emperical formulae have beendeveloped for calculation of suspended particulate matter (SPM)emission rates from various opencast coal mining activities. Theemission of gaseous pollutants (sulphur dioxide and nitrogenoxide) has been found negligible for various mining activities.Therefore, observation for gaseous pollutants has been consideredfor overall mine activities and empirical formulae have subsequently beendeveloped.The developed empirical formulae were calculatedby a field study at another coal mine. The measured andcalculated values of emission rate were compared for eachactivity. Average correlation between the measured andcalculated values for different activities was estimated to be 85.6–99.9%, which indicates fairly good accuracy.Validation of the study was also carried out by means of thefugitive dust model (FDM) using the calculated emissionrate data from the empirical formulae for each mining activity of amine, meteorological data and other details as input.The average accuracy between measured and predictedvalues of concentration of SPM at certain receptor locations wasfound to be 79%. A user-friendly emission software called`EmissCalc' was developed to calculate emission rate, whichcan be used as input for different air quality models.  相似文献   

Synthesis and screening of anilides having olefinic and alkyl moiety in the side chain as chemical hybridizing agents for wheat (Triticum aestivum L.)     

Chakraborty K  Devakumar C 《Journal of agricultural and food chemistry》2005,53(15):5959-5968

Induction of male sterility by deployment of chemical hybridizing agents (CHAs) holds immense potential in heterosis breeding of wheat. A total of 21 anilides having different aromatic substitutions and side-chain variation were synthesized and screened as CHAs on three genotypes of wheat viz., PBW 343, HW 2046, and HD 2733, at winter season. Various anilides having vinyl moiety in the acyl side chain were synthesized by condensation between substituted anilines with different esters or acid chlorides. Another lead in the form of N-alkyl anilines also became evident. The percent male sterility data caused by CHAs revealed the significant contribution of anilides containing vinyl double bond incorporated in the form of closed ring structure viz., furyl moiety as the side chain. 4'-Fluoro-furyl anilide (1) and 4'-bromo-furyl anilide (2) are found to be promising lead CHAs for the design of highly active molecules. QSAR analysis revealed a direct relationship of field effect exemplified by the Swain-Lupton constant F(p) for the aromatic substitution but an inverse relationship of molar refractivity MR for the side chain. The negative influences of parachor for the acyl domain have been underlined. The real guiding principle for selectivity of CHA action was found to be the pi value. The CHAs act by mimicking UDP-glucose, the key substrate in the synthesis of callose, or lead to an imbalance in acid-base equilibrium in pollen mother cells resulting in dissolution of callose wall by premature callase secretion.  相似文献   

Behavioral, ovarian and endocrine relationships in the pubertal bitch     

D E Wildt  S W Seager  P K Chakraborty 《Journal of animal science》1981,53(1):182-191

Behavioral, ovarian and endocrine correlates were determined in seven bitches experiencing first estrus, and the results compared with previous data obtained on multiparous females. One or more atypical reproductive patterns were observed in certain bitches at the pubertal estrus. The ability of pubertal dogs to display normal reproductive relationships appeared to be related to age, because animals that exhibited normal sexual behavior and endocrine profiles tended to be older than females that produced aberrant patterns. For the latter group, atypical observations included lack of sexual receptivity and reduced or inconsistent patterns of circulating concentrations of estradiol-17 beta, luteinizing hormone (LH) or progesterone. Ovulation was confirmed in all four pubertal dogs subjected to laparoscopy, including two bitches that failed to demonstrate estrous behavior. In individual animals, it appeared that inadequate or sporadic elevations in titers of estradiol-17 beta during the preovulatory phase of the cycle were associated with reduced or abbreviated LH surge concentrations, and the latter were subsequently related to an absent or only minor preovulatory rise in serum progesterone. Reduced preovulatory estradiol-17 beta concentrations and a delayed increase in circulating progesterone were also associated with a lack of sexual receptivity. These results (1) suggest that hormonal insufficiencies or irregularities exist in certain bitches at the pubertal estrus and that such atypical activity appears more characteristic of the first than later adult estrous periods, and (2) are consistent with the theory that estrogen preconditioning and a decrease in the endogenous estrogen to progesterone ratio are important in the initiation of sexual receptivity in this species.  相似文献   

Pattern and tissue distribution of catechol estrogen forming activity by pig conceptuses during the peri-implantation period     

C Chakraborty  S K Dey  D L Davis 《Journal of animal science》1989,67(4):991-998

The profile of catechol estrogen formation by pig conceptuses from d 14 to 20 of pregnancy (d 0 = 1st d of estrus) was studied using a direct product isolation assay for estrogen-2/4-hydroxylase (E-2/4-H). High performance liquid chromatography was coupled to detection of radioactive products in a flowing system to separate the 2- and 4-hydroxyestradiol (2- and 4-OH-E2) formed from estradiol. The major product was 2-OH-E2; its formation increased with increasing amounts of nicotinamide cofactors and exhibited a preference for NADPH. Maximum velocities were 909 and 154 pmol.mg protein-1.30 min-1, and apparent Michaelis constants were 7.14 and 5.12 microns, for 2- and 4-OH-E2 formation, respectively. Homogenates of d-13 conceptuses produced 1,151 +/- 142 pmol.mg protein-1.30 min-1 of 2-OH-E2. Estradiol-2-hydroxylase was affected (P less than .01) by day of pregnancy, and day effects from d 14 to 20 were described by a fourth-order equation (P less than .001). Conceptuses collected on d 14 produced 119 +/- 15.4 pmol of 2-OH-E2.mg protein-1.30 min-1. By d 15, E-2-activity had declined to 15.7 +/- 1.8 pmol.mg protein-1.30 min-1. Formation of 2-OH-E2 increased to 64.2 +/- 15.4 pmol.mg protein-1.30 min-1 on d 17, remained stable through d 19, and was 39.4 +/- 13.8 pmol.mg protein-1. 30 min-1 on d 20. Therefore, E-2/4-H activity appears to be regulated from d 14 to 20 of pregnancy in pigs; it may participate in the establishment of pregnancy.  相似文献