Accuracy of imputation of single nucleotide polymorphism marker genotypes from low‐density panels in Japanese Black cattle          下载免费PDF全文

Shinichiro Ogawa  Hirokazu Matsuda  Yukio Taniguchi  Toshio Watanabe  Akiko Takasuga  Yoshikazu Sugimoto  Hiroaki Iwaisaki 《Animal Science Journal》2016,87(1):3-12

Using target and reference fattened steer populations, the performance of genotype imputation using lower‐density marker panels in Japanese Black cattle was evaluated. Population imputation was performed using BEAGLE software. Genotype information for approximately 40 000 single nucleotide polymorphism (SNP) markers by Illumina BovineSNP50 BeadChip was available, and imputation accuracy was assessed based on the average concordance rates of the genotypes, varying equally spaced SNP densities, and the number of individuals in the reference population. Two additional statistics were also calculated as indicators of imputation performance. The concordance rates tended to be lower for SNPs with greater minor allele frequencies, or those located near the ends of the chromosomes. Longer autosomes yielded greater imputation accuracies than shorter ones. When SNPs were selected based on linkage disequilibrium information, relative imputation accuracy was slightly improved. When 3000 and 10 000 equally spaced SNPs were used, the imputation accuracies were greater than 90% and approximately 97%, respectively. These results indicate that combining genotyping using a lower‐density SNP chip with genotype imputation based on a population of individuals genotyped using a higher‐density SNP chip is a cost‐effective and valid approach for genomic prediction.  相似文献   

Mycoplasma pneumonia of swine (MPS) resistance and immune characteristics of pig lines generated by crossing an MPS pulmonary lesion selected Landrace line and a highly immune capacity selected Large White line          下载免费PDF全文

Liushiqi Borjigin  Tomoyuki Shimazu  Yuki Katayama  Kouichi Watanabe  Haruki Kitazawa  Sang‐gun Roh  Hisashi Aso  Kazuo Katoh  Takafumi Uchida  Yoshihito Suda  Akiko Sakuma  Mituru Nakajo  Keiichi Suzuki 《Animal Science Journal》2016,87(8):972-981

To understand the influence of crossbreeding on Mycoplasma pneumonia of swine (MPS) resistance and immune characteristics, two crossbred lines were characterized. One crossbred line, LaWa, was generated by crossing the MPS pulmonary lesion selected Landrace line (La) and the highly immune‐selected Large White line (Wa). The second crossbred line, LaWb, was generated by crossing the La line and the nonselected Large White line (Wb). The crossbred LbWb line (nonselected Landrace line × nonselected Large White line) and the La line were used as controls. The LaWa and LaWb lines had an intermediate level of MPS lung lesions between La and LbWb lines, although the difference was not statistically significant. After stimulation with sheep red blood cells (SRBCs), the LaWb and LaWa lines showed immune characteristics similar to that of the La line; the number of monocytes in peripheral blood increased, while B cells, T cells, secretion of SRBC‐specific immunoglobulin G, and interleukin (IL)‐13 decreased. Additionally, the number of natural killer (NK) cells and the expression of IL‐4 and IL‐17 were significantly higher in the LaWb and LaWa lines, respectively. These data suggested that crossbreeding of La and Wa lines resulted in the inheritance of some of the selected immune responses.  相似文献   

Comparison of water status indicators for young peach trees   总被引：12，自引：1，他引：12  

Damiano?RemoriniEmail author  Rossano?Massai 《Irrigation Science》2003,22(1):39-46

We measured a series of physiological and physical indicators and compared them to xylem sap flow, to identify the most sensitive and reliable plant water status indicator. In the growing season of 1998, 4-year-old peach trees (Prunus persica Batsch cv. 'Suncrest', grafted on 'GF 677' rootstock) were studied under two irrigation treatments, 25 l day^у and no irrigation, and during recovery. Trials were conducted near Pisa (Italy) in a peach orchard situated on a medium clay loam soil and equipped with a drip-irrigation system (four 4 l h^у drippers per tree). Measurements of leaf water potential (ƒ_W), stem water potential (ƒ_S), and leaf temperature (T_l) were taken over 5 days (from dawn to sunset) and analyzed in conjunction with climatic data, sap flow (SF), trunk diameter fluctuation (TDF) and soil water content (SWC). Physiological indicators showed substantial differences in sensitivity. The first indication of changes in water status was the decrease of stem radial growth. TDF and SF revealed significant differences between the two irrigation treatments even in the absence of differences in pre-dawn leaf water potential (pdƒ_W), up until now widely accepted as the benchmark of water status indicators. Irrigated trees showed a typical trend in SF rate during the day, while in non-irrigated plants the maximum peak of transpiration was anticipated. Measurements of water potential showed ƒ_S to be a better indicator of tree water status than ƒ_W. T_l was found to have poor sensitivity. In conclusion, we found the sensitivity of the indicators from the most to the least was: TDF >SF rate >SF cumulated = pdƒ_W=ƒ_S>mdƒ_W>T_l.  相似文献   

Controlled water table management as a strategy for reducing salt loads from subsurface drainage under perennial agriculture in semi-arid Australia   总被引：2，自引：0，他引：2  

John?W.?HornbuckleEmail author  Evan?W.?Christen  James?E.?Ayars  Richard?D.?Faulkner 《Irrigation and Drainage Systems》2005,19(2):145-159

Recent community based actions to ensure the sustainability of irrigation and protection of associated ecosystems in the Murrumbidgee Irrigation Area (MIA) of Australia has seen the implementation of a regional Land and Water Management Plan. This aims to improve land and water management within the irrigation area and minimise downstream impacts associated with irrigation. One of the plan objectives is to decrease current salt loads generated from subsurface drainage in perennial horticulture within the area from 20 000 tonnes/year to 17 000 tonnes/year. In order to meet such objectives Controlled Water table Management (CWM) is being investigated as a possible ‘Best Management Practice’, to reduce drainage volumes and salt loads.During 2000–2002 a trial was conducted on a 15 ha subsurface drained vineyard. This compared a traditional unmanaged subsurface drainage system with a controlled drainage system utilizing weirs to maintain water tables and changes in irrigation scheduling to maximize the potential crop use of a shallow water table. Drainage volumes, salt loads and water table elevations throughout the field were monitored to investigate the effects of controlled drainage on drain flows and salt loads.Results from the experiment showed that controlled drainage significantly reduced drainage volumes and salt loads compared to unmanaged systems. However, there were marked increases in soil salinity which will need to be carefully monitored and managed.  相似文献   

Potato evapotranspiration and yield under different drip irrigation regimes   总被引：1，自引：0，他引：1  

Yaohu?KangEmail author  Feng-Xin?Wang  Hai-Jun?Liu  Bao-Zhong?Yuan 《Irrigation Science》2004,23(3):133-143

A field experiment comparing different irrigation frequencies and soil matric potential thresholds on potato evapotranspiration (ET), yield (Y) and water-use efficiency (WUE) was carried out in a loam soil. The experiment included five treatments for soil matric potential: F1 (-15 kPa), F2 (-25 kPa), F3 (-35 kPa), F4 (-45 kPa) and F5 (-55 kPa) and six treatments for irrigation frequency: N1 (once every day), N2 (once every 2 days), N3 (once every 3 days), N4 (once every 4 days), N6 (once every 6 days) and N8 (once every 8 days). Results indicate that both soil matric potential and drip irrigation frequency influenced potato ET, Y and WUE. Potato ET increased as irrigation frequency and soil matric potential increased. Comparing soil water potential, the highest ET was 63.4 mm (32.1%) more than the lowest value. Based on irrigation frequency treatments, the highest ET was 36.7 mm (19.2%) more than the lowest value. Potato Y and WUE were also found to increase as irrigation frequency increased. Potato Y increased with an increase in soil water potential then started to decrease. The highest Y and WUE values were achieved with a soil matric potential threshold of -25 kPa and an irrigation frequency of once a day.Communicated by J. Ayars  相似文献   

Biochar improves sediment microbial fuel cell performance in low conductivity freshwater sediment     

Shanshan?Chen  Jiahuan?Tang  Li?Fu  Yong?Yuan  Shungui?ZhouEmail author 《Journal of Soils and Sediments》2016,16(9):2326-2334

  相似文献   

Nutrient limitations to bacterial and fungal growth during cellulose decomposition in tropical forest soils     

Andrew?T.?NottinghamEmail authorView author&#;s OrcID profile  Lettice?C.?Hicks  Adan?J.?Q.?Ccahuana  Norma?Salinas  Erland?B??th  Patrick?Meir 《Biology and Fertility of Soils》2018,54(2):219-228

Nutrients constrain the soil carbon cycle in tropical forests, but we lack knowledge on how these constraints vary within the soil microbial community. Here, we used in situ fertilization in a montane tropical forest and in two lowland tropical forests on contrasting soil types to test the principal hypothesis that there are different nutrient constraints to different groups of microorganisms during the decomposition of cellulose. We also tested the hypotheses that decomposers shift from nitrogen to phosphorus constraints from montane to lowland forests, respectively, and are further constrained by potassium and sodium deficiency in the western Amazon. Cellulose and nutrients (nitrogen, phosphorus, potassium, sodium, and combined) were added to soils in situ, and microbial growth on cellulose (phospholipid fatty acids and ergosterol) and respiration were measured. Microbial growth on cellulose after single nutrient additions was highest following nitrogen addition for fungi, suggesting nitrogen as the primary limiting nutrient for cellulose decomposition. This was observed at all sites, with no clear shift in nutrient constraints to decomposition between lowland and montane sites. We also observed positive respiration and fungal growth responses to sodium and potassium addition at one of the lowland sites. However, when phosphorus was added, and especially when added in combination with other nutrients, bacterial growth was highest, suggesting that bacteria out-compete fungi for nitrogen where phosphorus is abundant. In summary, nitrogen constrains fungal growth and cellulose decomposition in both lowland and montane tropical forest soils, but additional nutrients may also be of critical importance in determining the balance between fungal and bacterial decomposition of cellulose.  相似文献   

杂交水稻夷优180的选育与应用     

饶溶晖 《福建稻麦科技》2017,35(2)

夷优180系福建省南平市农业科学研究所用自主选育的三系不育系夷A与恢复系南恢180配组而成的杂交中稻新品种。经多年在福建省各地试验、试种表现群体整齐、适应性广、产量高、抗性好等特点,2014年通过福建省农作物品种审定。简述了杂交水稻夷优180的选育及应用。  相似文献   

中稻大田机插与手工插秧简比试验     

江世辉 《福建稻麦科技》2017,35(2)

水稻机械化插秧能够大幅度提高劳动生产率,减轻劳动强度,降低生产成本,达到增产增收的效果。试验结果表明:水稻机插栽培有效穗数多,有利于形成较为合理的群体结构,从而穗粒数较多,结实率提高,产量高,增产效果明显。  相似文献   

海水倒灌农田水稻栽培技术示范小结     

符策强  陈健晓  孟卫东  张冬明 《福建稻麦科技》2017,35(2)

通过对2014年"威马逊"超强台风造成海水倒灌农田后的修复改良水稻栽培技术,包括品种筛选、整地、育秧、水肥管理等试验。摸索出一套海水倒灌农田的水稻高产栽培技术,解决了海水倒灌农田灾区农民的口粮问题,为今后海南沿海地区台风造成海水倒灌农田后的水稻恢复生产储备相应技术。  相似文献