Challenges of modeling ocean basin ecosystems   总被引：1，自引：0，他引：1  

deYoung B  Heath M  Werner F  Chai F  Megrey B  Monfray P 《Science (New York, N.Y.)》2004,304(5676):1463-1466

With increasing pressure for a more ecological approach to marine fisheries and environmental management, there is a growing need to understand and predict changes in marine ecosystems. Biogeochemical and physical oceanographic models are well developed, but extending these further up the food web to include zooplankton and fish is a major challenge. The difficulty arises because organisms at higher trophic levels are longer lived, with important variability in abundance and distribution at basin and decadal scales. Those organisms at higher trophic levels also have complex life histories compared to microbes, further complicating their coupling to lower trophic levels and the physical system. We discuss a strategy that builds on recent advances in modeling and observations and suggest a way forward that includes approaches to coupling across trophic levels and the inclusion of uncertainty.  相似文献   

A physical map of the 1-gigabase bread wheat chromosome 3B   总被引：2，自引：0，他引：2  

Paux E  Sourdille P  Salse J  Saintenac C  Choulet F  Leroy P  Korol A  Michalak M  Kianian S  Spielmeyer W  Lagudah E  Somers D  Kilian A  Alaux M  Vautrin S  Bergès H  Eversole K  Appels R  Safar J  Simkova H  Dolezel J  Bernard M  Feuillet C 《Science (New York, N.Y.)》2008,322(5898):101-104

As the staple food for 35% of the world's population, wheat is one of the most important crop species. To date, sequence-based tools to accelerate wheat improvement are lacking. As part of the international effort to sequence the 17-billion-base-pair hexaploid bread wheat genome (2n = 6x = 42 chromosomes), we constructed a bacterial artificial chromosome (BAC)-based integrated physical map of the largest chromosome, 3B, that alone is 995 megabases. A chromosome-specific BAC library was used to assemble 82% of the chromosome into 1036 contigs that were anchored with 1443 molecular markers, providing a major resource for genetic and genomic studies. This physical map establishes a template for the remaining wheat chromosomes and demonstrates the feasibility of constructing physical maps in large, complex, polyploid genomes with a chromosome-based approach.  相似文献   

Mutations in U4atac snRNA, a component of the minor spliceosome, in the developmental disorder MOPD I     

He H  Liyanarachchi S  Akagi K  Nagy R  Li J  Dietrich RC  Li W  Sebastian N  Wen B  Xin B  Singh J  Yan P  Alder H  Haan E  Wieczorek D  Albrecht B  Puffenberger E  Wang H  Westman JA  Padgett RA  Symer DE  de la Chapelle A 《Science (New York, N.Y.)》2011,332(6026):238-240

Small nuclear RNAs (snRNAs) are essential factors in messenger RNA splicing. By means of homozygosity mapping and deep sequencing, we show that a gene encoding U4atac snRNA, a component of the minor U12-dependent spliceosome, is mutated in individuals with microcephalic osteodysplastic primordial dwarfism type I (MOPD I), a severe developmental disorder characterized by extreme intrauterine growth retardation and multiple organ abnormalities. Functional assays showed that mutations (30G>A, 51G>A, 55G>A, and 111G>A) associated with MOPD I cause defective U12-dependent splicing. Endogenous U12-dependent but not U2-dependent introns were found to be poorly spliced in MOPD I patient fibroblast cells. The introduction of wild-type U4atac snRNA into MOPD I cells enhanced U12-dependent splicing. These results illustrate the critical role of minor intron splicing in human development.  相似文献   

Biochemical composition and kinetics of C and N mineralization of animal wastes: a typological approach     

Thierry Morvan  Bernard Nicolardot  Léonard Péan 《Biology and Fertility of Soils》2006,42(6):513-522

Forty-seven different animal wastes were characterized using chemical and organic matter fractionation methods (water extraction and Van Soest method) and 224-day incubation studies to assess their decomposition in soil. Simple correlation and multiple factor analysis were performed to establish relationships between the composition of these wastes and C and N mineralization. Carbon and N contents ranged from 101 to 469 mg C kg⁻¹ dry matter (d.m.) and from 4 to 39 mg N kg⁻¹ d.m. Soluble C and N represented less than 9% of organic C and 1.5% of total N at 20°C, respectively. The C fractions soluble at 100°C or in neutral detergent were larger and represented 14 and 32% of the organic C, respectively. The hemicellulose-like (HEM) and cellulose-like (CEL) fractions contained about 16.5 and 6% of the organic N, respectively. The C distribution in the lignin-like (LIG) and CEL fractions was comparable, but the former contained more N. Carbon mineralization varied from 5 to 62% of the organic C added during the 224-day incubation; 70% of the wastes induced net N mineralization at the end of incubation (from 3 to 51% of organic N). Other wastes induced net soil inorganic N immobilization, from −1 to −31% of the organic N added. Most highly significant correlations were established between the C mineralization and the C present in the water-soluble fraction at 20°C, and the HEM and LIG fractions. Relationships between N mineralization and biochemical characteristics were weak, except with the soluble Van Soest fraction, and highly significant correlations were observed between N mineralization rates calculated at 224 days of incubation and the organic N content or C/N ratio of wastes. Finally, an objective hierarchical classification based on composition criteria and C and N mineralization led to the definition of six different classes of wastes. It permitted differentiation between four composted wastes and intrinsically different wastes (i.e., cattle manures, pig manures, and poultry manures) which could not be objectively regrouped. It also placed some very different types of waste (solid phase from pig slurry separation, pig manures, and composted pig mixtures) in the same class.  相似文献   

Abiotic degradation of lignified cell walls by carbonate and copper salt     

Durot N  Pollet B  Lapierre C  Kurek B 《Journal of agricultural and food chemistry》2004,52(4):816-822

This study reports on the destructuration of Wheat straw and Spruce wood cell walls after maceration in potassium carbonate or sodium hydroxide at pH = 10 in the presence of copper acetate. The alkaline treatments had a predominant impact on the wheat straw cell wall components over copper acetate. Either K-carbonate or Na-hydroxide extracted from wheat straw a particular lignin fraction rich in condensed C-C linkages, leading to the unmasking of new ether-linked sub-structures in the cell wall. This unmasking was increased in the presence of copper salt but only in the nonextracted Wheat straw sample incubated in carbonate and not in the corresponding extractive-free sample. This difference was related to the leaching of compounds from the nonextracted cell wall, which could sustain oxidative activity of copper by hindering its precipitation into inactive hydroxide and/or carbonate species. In Spruce wood samples, copper salt was the principal factor impacting on the lignin structure over alkali alone. Its effect was, however, only detected at the level of C-C linked dimers. These results confirmed that unmasking of lignin sub-structures also occurred in Spruce wood, but probably through mechanisms different from that evidenced in Wheat straw.  相似文献   

Possible role of plant phenolics in the production of trichothecenes by Fusarium graminearum strains on different fractions of maize kernels     

Bakan B  Bily AC  Melcion D  Cahagnier B  Regnault-Roger C  Philogène BJ  Richard-Molard D 《Journal of agricultural and food chemistry》2003,51(9):2826-2831

Four trichothecene-producing strains of Fusarium graminearum were grown on three maize grain fractions, whole grain, degermed grain, and the germ, to determine the effect of natural substrates on mycotoxin production. Monitoring the ergosterol content after 25 days of incubation indicated that fungal growth on all grain fractions was comparable. Trichothecene (TCT) production was highest on degermed grain, less on whole grain, and very low or nondetectable on the germ; similar results were found with four different strains. It was concluded that inhibitor(s) of TCT biosynthesis were present in maize germ. The presence of phenolic compounds was investigated in the different fractions. The hydroxamate 4-acetylbenzoxazolin-2-one (4-ABOA), a known inhibitor of mycotoxin production, was found in the degermed and whole grain fractions but not in the germ. Therefore, the TCT inhibition observed on the maize germ fraction used in our study is clearly not linked to 4-ABOA. Other soluble phenolic compounds were found at a much higher concentration in the germ than in the two other fractions. The inhibition property of the soluble ester-bound extracts was tested in liquid culture. A possible role for these compounds is discussed.  相似文献   

The origin of the A genome donor of wheats (Triticum: Poaceae) – a perspective based on the sequence variation of the 5S DNA gene units     

Bernard R. Baum  L. Grant Bailey 《Genetic Resources and Crop Evolution》2004,51(2):183-196

In a prior study on the haplomes of wheat using the 5S rRNA gene we assigned the long A1 and short A1 unit classes to the A haplome in the diploid T. monococcum. The short A1 unit class is absent in the tetraploids T. turgidum and T. timopheevii and in the hexaploid T. aestivum, although present in the hexaploid T. zhukovskyi. Both T. turgidum and T. aestivum contained a different 5S DNA unit class labeled the short A2.The purpose of this paper was to study the short A2 units in the two diploid species to shed light on the theory that the A haplome donor of T. turgidum and T. aestivum was T. urartu. Fifty eight clones were obtained from 12 accessions, sequenced and analyzed. As expected T. baeoticum, which is often classified as a subspecies of T. monococcum, contained the long A1 and the short A1 5S DNA units. Unexpectedly, T. urartu had the long A1 and the short G1 unit classes instead and other units not found so far in Triticum. These findings support the hypothesis that the donor of the A genome in T. zhukovskyi was T. monococcum, as identified by the short A1 units. However, the short A1 units are absent in T. timopheevii, also a carrier of the A genome. The short G1 units found in T. urartu also identify it as a possible donor of the G genome to T. timopheevii. The short G1 units were also found in T. aestivum in our prior study. The long G1 unit class was not found in T. urartu but reported from T. timopheevii and T. zhukovskyi. The implications of these and related findings on the evolution of wheats are discussed.  相似文献   

Modelling of sorption experiments and seepage data of an Amazonian Ultisol subsoil under cropping fallow     

Bernard Ludwig  Dirk Hlscher  Partap Khanna  Jürgen Prenzel  Horst Flster 《植物养料与土壤学杂志》1997,160(4):447-454

The results of physico-chemical investigations of an Ultisol subsoil under a 2-year old fallow in eastern Amazonia are presented. Subsoil chemistry was studied using 4 different approaches: i) concentrations of H, Na, K, Ca, Mg, Mn, Al, and Fe in seepage water were measured under field conditions, ii) the equilibrium soil chemistry was studied in sequential batch experiments where the soil was treated with different solutions, iii) results of batch experiments were simulated with a chemical equilibrium model, and iv) the seepage data were calculated using selectivity coefficients obtained by modelling the batch experiments. The model included multiple cation exchange, precipitation/dissolution of Al(OH)₃ and inorganic complexation. Cation selectivity coefficients were pK_x/Ca^sel: X = Na: 0.3, K: 0.8, Mg: ?0.1, and Al: 0.4. The amount of cations sorbed ranged from ?0.2 to 2.0 (K), ?0.7 to 2.3 (Mg), ?1.6 to 1.8 (Ca), ?4.8 to 3.6 (Al) and 0.0 to 8.5 (Na) mmol_c kg^?1. The model predictions were good with values lying within 0.3 pH units (for the pH range 3.7 to 7.2), and 3% of CEC for individual cations. The most important proton buffer reaction seemed to be the dissolution of gibbsite and a large release of Al into the soil solution. When selectivity coefficients obtained by the modelling procedure were used to predict the field data for cation concentrations in the seepage water, they decreased in the following order: Na > K > Ca > Mg > Al. These calculated values were similar to the measured order: Na > Ca > K ≈ Mg > Al. Thus the options for managing these soils should be carefully chosen to avoid soil acidification which may result from inappropriate use of fertilizer during the cropping period.  相似文献   

Trial application of the gel immuno-diffusion method to the experimental diagnosis of bovine mucosal disease     

A Charton  P Faye  C Bernard  C Le Layec 《Bulletin de l'Académie vétérinaire de France》1970,43(9):403-408

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Radiology improves diagnosis in trauma cases.          下载免费PDF全文

M A Bernard 《The Canadian veterinary journal. La revue veterinaire canadienne》1980,21(2):49

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