Metabolomic Tools for Secondary Metabolite Discovery from Marine Microbial Symbionts     

Lynsey Macintyre  Tong Zhang  Christina Viegelmann  Ignacio Juarez Martinez  Cheng Cheng  Catherine Dowdells  Usama Ramadan Abdelmohsen  Christine Gernert  Ute Hentschel  RuAngelie Edrada-Ebel 《Marine drugs》2014,12(6):3416-3448

Marine invertebrate-associated symbiotic bacteria produce a plethora of novel secondary metabolites which may be structurally unique with interesting pharmacological properties. Selection of strains usually relies on literature searching, genetic screening and bioactivity results, often without considering the chemical novelty and abundance of secondary metabolites being produced by the microorganism until the time-consuming bioassay-guided isolation stages. To fast track the selection process, metabolomic tools were used to aid strain selection by investigating differences in the chemical profiles of 77 bacterial extracts isolated from cold water marine invertebrates from Orkney, Scotland using liquid chromatography-high resolution mass spectrometry (LC-HRMS) and nuclear magnetic resonance (NMR) spectroscopy. Following mass spectrometric analysis and dereplication using an Excel macro developed in-house, principal component analysis (PCA) was employed to differentiate the bacterial strains based on their chemical profiles. NMR ¹H and correlation spectroscopy (COSY) were also employed to obtain a chemical fingerprint of each bacterial strain and to confirm the presence of functional groups and spin systems. These results were then combined with taxonomic identification and bioassay screening data to identify three bacterial strains, namely Bacillus sp. 4117, Rhodococcus sp. ZS402 and Vibrio splendidus strain LGP32, to prioritize for scale-up based on their chemically interesting secondary metabolomes, established through dereplication and interesting bioactivities, determined from bioassay screening.  相似文献   

Using behavioral landscape ecology to predict species’ responses to land-use and climate change   总被引：1，自引：0，他引：1  

Jessie L. Knowlton  Catherine H. Graham 《Biological conservation》2010,143(6):1342-1354

Climate change and habitat destruction are widely recognized as major threats to species’ survival. As a result of these anthropogenic impacts, species are often forced into novel landscapes where their persistence is difficult to predict. Knowledge of how individuals move or disperse through the landscape, choose habitat in which to settle, and produce offspring which survive to repeat the process can greatly improve our ability to predict species’ persistence. The field of behavioral landscape ecology uses a strong theoretical base to explore, often experimentally, how the behavior of a particular species is affected by heterogeneous and rapidly changing landscapes and can offer valuable insight for managing species in the face of human-induced environmental changes. When interpreted by modelers, results of landscape-level behavioral experiments can be quantified for use in predictive models. To this end, we summarize the methods and results of research using direct experimental manipulation techniques broken into the following categories: translocations, playback experiments, food resource manipulations, manipulations of reproductive success, direct manipulations of the landscape, and manipulations of predation risk. We review and place in a theoretical framework the results from this emerging body of research regarding how organisms move in and respond to different types of landscapes, both natural and human-altered. We go onto highlight the potential of each experimental method to quantify different processes, which may be useful when interpreted by modelers attempting to parameterize predictive models. Finally, we suggest future directions for experimental research that will allow for greater integration of behavioral landscape ecology and predictive modeling.  相似文献   

Nasopharyngeal myxosarcoma in a Bengal tiger (Panthera tigris).     

Catherine M Shilton  Margret S Thompson  René Meisner  Brad Lock  William A Lindsay 《Journal of zoo and wildlife medicine》2002,33(4):371-377

An 18- to 25-yr-old intact female Bengal tiger (Panthera tigris) was diagnosed antemortem and postmortem with nasopharyngeal myxosarcoma metastatic to the lung, chronic lymphoplasmacytic otitis media, and lymphoplasmacytic and eosinophilic stomatitis. Myxosarcomas are rare in domestic animals and seldom metastasize; this tumor has not been previously reported in an exotic felid. Computed tomography of the skull was used during the diagnoses.  相似文献   

Toll-like receptor 3 (TLR3): a new marker of canine monocytes-derived dendritic cells (cMo-DC)     

Bonnefont-Rebeix C  Marchal T  Bernaud J  Pin JJ  Leroux C  Lebecque S  Chabanne L  Rigal D 《Veterinary immunology and immunopathology》2007,118(1-2):134-139

Toll-like receptors (TLRs) are a family of functionally important receptors for recognition of pathogen-associated molecular pattern (PAMP) since they trigger the pro-inflammatory response and upregulation of costimulatory molecules, linking the rapid innate response to adaptative immunity. In human leukocytes, TLR3 has been found to be specifically expressed in dendritic cells (DC). This study examined the expression of TLR3 in canine monocytes-derived DC (cMo-DC) and PBMC using three new anti-TLR3 mAbs (619F7, 722E2 and 713E4 clones). The non-adherent cMo-DC generated after culture in canine IL-4 plus canine GM-CSF were labelled with the three anti-TLR3 clones by flow cytometry, with a strong expression shown for 619F7 and 722E2 clones. By contrast, TLR3 expression was low to moderate in canine monocytes and lymphocytes. These results were confirmed by Western blot using 619F7 and 722E2 clones and several polypeptide bands were observed, suggesting a possible cleavage of TLR3 molecule or different glycosylation states. In addition, TLR3 was detectable in immunocytochemistry by using 722E2 clone. In conclusion, this first approach to study canine TLR3 protein expression shows that three anti-TLR3 clones detect canine TLR3 and can be used to better characterize canine DC and the immune system of dogs.  相似文献   

Molecular biology of male gametogenesis     

Sheila Mccormick  Catherine Curie  Yoram Eyal  Jorge Muschietti  Lori Dircks  Rima Kulikauskas 《Euphytica》1994,79(3):245-250

Pollen development has been studied at a molecular level in several systems that are amenable to genetic or transgenic analysis. We have characterized several tomato genes that are expressed late in pollen development. Our goals in this research were 1) to determine the cis- and tran-acting factors that mediate pollen expression, and 2) to determine the functions of the proteins encoded by these genes. We currently favor the hypothesis that pollen-specific gene expression is mediated in a combinatorial manner. Antisense experiments have indicated an important role for the LAT52 protein during pollen hydration.  相似文献   

Methanolic extract of Verbascum macrurum as a source of natural preservatives against oxidative rancidity     

Aligiannis N  Mitaku S  Tsitsa-Tsardis E  Harvala C  Tsaknis I  Lalas S  Haroutounian S 《Journal of agricultural and food chemistry》2003,51(25):7308-7312

The antioxidant properties of various fractions of a methanolic extract obtained from the aerial parts of Verbascum macrurum have been determined by monitoring their capacity to scavenge the stable free-radical DPPH. They were also evaluated as natural preservatives against oxidative rancidity using the accelerated Rancimat method. Their activities expressed as protection factor (PF(r)) indicated that the fractions rich with phenylpropanoid glycosides were more potent compared to alpha-tocopherol and of the same magnitude as BHT, which were used as reference standards. Ten natural compounds were identified as components of this methanolic extract and were isolated by medium-pressure liquid chromatography (MPLC). Assessment of their antioxidant activities established that acteoside, a polyhydroxylated phenylpropanoid glycoside derivative, is the most potent free radical scavenger and showed the highest protection factor (PF(r)) against sunflower-oil-induced oxidative rancidity. Its activity is comparable to the synthetic antioxidant BHT and clearly superior to natural alpha-tocopherol. This compound therefore represents a very interesting candidate for use in food preservation as natural protecting agent against oxidative rancidity.  相似文献   

Comparative efficiencies of isopropyl and tert-butyl alcohols for extracting zeins from maize endosperm     

Landry J  Delhaye S  Damerval C 《Journal of agricultural and food chemistry》2002,50(14):4131-4134

Protein of endosperm of maize grains originating from three wild-type inbreds and their opaque-2 versions were solubilized in diverse extracts (E) by the sequential use of 0.5 M NaCl, water (E(1,2)), alcohol plus a reducing agent (E(3)), and salt plus a reducing agent (E(4)). Zeins were isolated in extracts E(3) and E(4) obtained by using 55% (w/w) isopropyl alcohol (i-PrOH) + 0.2% dithiothreitol (DTT) followed by 0.5 M NaCl + 0.2% DTT buffered at pH 10 or 60% tert-butyl alcohol (t-BuOH) + 0.2% DTT followed by 0.5% sodium acetate + 0.2% DTT in 30% t-BuOH. For a given genotype the percentage of extracted zeins was independent of the nature of the alcohol. The latter had a slight effect on the respective magnitude of E(3) and E(4): E(3) increased at the expense of E(4) when t-BuOH was substituted to i-PrOH for their isolation. The percentage of the total endosperm nitrogen present in E(3) + E(4) was identical to that of fractions F(II) + F(III) + F(IV) isolated according to the classical Landry-Moureaux extraction procedure. SDS-PAGE analysis revealed the presence of all types of zeins (alpha, beta, gamma, and delta) in E(3) and F(III), residual zeins in E(4) isolated with t-BuOH, and streaking only in E(4) and F(IV) isolated with NaCl at pH 10. The data together with those of the literature were discussed with regard to the influence of procedure on the yield of zeins using alcoholic extraction.  相似文献   

Water usage and microclimate     

Catherine M. M. Felton 《Water, air, and soil pollution》1979,12(1):91-101

Energy and water budget analyses are employed as methods for assessing the effects of vegetation type, cultivation practices, and irrigation methods on the microclimate. A comparison is made of vegetation types that employ water received from (1) natural precipitation and (2) irrigation. Forest lands are compared to corn cultivated by conventional tillage and no tillage methods. The forest canopy generally has a lower surface albedo, greater surface roughness, higher transpiration rates, and increased water storage than the bare soil, mulched, and vegetated surfaces of a corn field. No tillage cultivation reduces wind and water erosion, lowers soil temperatures, and improves water retention compared to standard tillage used on corn fields. Irrigated agriculture has replaced much of the drought resistant vegetation of the Central Valley of California. The energy and water budgets of irrigated crops grown in the semi-arid climate of the Central Valley and irrigated by flood or sprinkler methods exhibit microclimates in which evapotranspiration dominates the energy and mass fluxes. Drip irrigation methods, by contrast, have reduced water losses compared to flood and sprinkler methods. The drip system supplies metered amounts of water to the base of each plant; low soil evaporation and improved water supply to the growing plant results from this method. The latent heat flux is reduced over that found in fields irrigated by flooding or spraying. Generally, agricultural transformation of large stands of natural vegetation is expected to change the micro- and macroclimate of the areas affected.  相似文献   

The effect of pH,aluminum, and chelator manipulations on the growth of acidic and circumneutral species of Asterionella     

Catherine M. Riseng  Robert W. Gensemer  Susan S. Kilham 《Water, air, and soil pollution》1991,60(3-4):249-261

The growth rates of two diatoms, acidophilic Asterionella ralfsii and circumneutral A. formosa, were differentially affected by varying pH, Al, and EDTA in chemically defined media. Free Al ion concentration increased as pH and EDTA concentration decreased. Free trace metal ion concentration decreased as EDTA levels increased but increased by orders of magnitude upon addition of Al. pH had an overriding species specific effect on growth rate; at low pH A. ralfsii had higher growth rates than A. formosa and vice versa at high pH. For both species higher EDTA levels depressed growth rates. Moderate additions of Al generally resulted in growth stimulation. The growth rate stimulations, especially at 200 and 400 μg L^?1 Al additions, correlate to increases in free trace metal ion concentrations. The EDTA-AI interaction effects on growth rate were both pH and concentration dependent: at pH 7 both species were stimulated by addition of Al at all EDTA levels (except A. ralfsii at 5.0 mM EDTA and A. formosa at 0.5 mNM EDTA); at pH 6 Al addition either stimulated or had no effect on the growth rates of both species (except at low EDTA and high Al levels); at pH 5 A. formosa did not grow and additions of 200 μg L^?1 Al stimulated growth of A. ralfsii. It is likely that the effect of pH, Al, and EDTA on speciation of essential or toxic trace metals affects growth rates of these diatoms in a species specific manner.  相似文献   

Do multipurpose companion trees affect high value timber trees in a silvopastoral plantation system?     

Mirco Plath  Karsten Mody  Catherine Potvin  Silvia Dorn 《Agroforestry Systems》2011,81(1):79-92

Establishment of native timber trees on deforested land may contribute to the livelihood of farmers, to improved ecosystem services and to increased greenhouse gas uptake. Here, we present a new silvopastoral planting design to assess species performance and interspecific competition or facilitation effects among native timber and multipurpose trees in Central America. Two timber species, Tabebuia rosea and Cedrela odorata, were established in three low-density planting regimes allowing combined tree and future livestock production: (1) solitary planting, (2) companion planting with Guazuma ulmifolia, and (3) companion planting with the nitrogen-fixing Gliricidia sepium. We quantified survival, growth and reforestation potential of the two timber species subjected to the different planting regimes for the first 2 years after establishment. Nitrogen concentration as well as stable nitrogen and carbon isotope composition (δ¹⁵N, δ¹³C) of leaves of the timber saplings were determined. T. rosea showed higher survival and better growth than C. odorata under varying environmental conditions (soil, concomitant vegetation). Performance of the timber saplings was unaffected by either companion species. Planting regimes had no effect on foliar nitrogen concentration and δ¹⁵N of the two timber species, although δ¹⁵N values indicated nitrogen fixation activity in G. sepium trees. Planting regimes affected foliar δ¹³C values in T. rosea. δ¹³C values were significantly higher in solitarily growing individuals, suggesting lower exposition to water stress conditions in saplings surrounded by companion species. As we found positively correlated growth traits among timber and multipurpose trees, a combined planting may benefit farmers by providing additional goods and services.  相似文献