A sequential threshold cure model for genetic analysis of time-to-event data     

Ødegård J  Madsen P  Labouriau R  Gjerde B  Meuwissen TH 《Journal of animal science》2011,89(4):943-950

In analysis of time-to-event data, classical survival models ignore the presence of potential nonsusceptible (cured) individuals, which, if present, will invalidate the inference procedures. Existence of nonsusceptible individuals is particularly relevant under challenge testing with specific pathogens, which is a common procedure in aquaculture breeding schemes. A cure model is a survival model accounting for a fraction of nonsusceptible individuals in the population. This study proposes a mixed cure model for time-to-event data, measured as sequential binary records. In a simulation study survival data were generated through 2 underlying traits: susceptibility and endurance (risk of dying per time-unit), associated with 2 sets of underlying liabilities. Despite considerable phenotypic confounding, the proposed model was largely able to distinguish the 2 traits. Furthermore, if selection is for improved susceptibility rather than endurance, the error of applying a classical survival model was nonnegligible. The difference was most pronounced for scenarios with substantial underlying genetic variation in endurance and when the 2 underlying traits were lowly genetically correlated. In the presence of nonsusceptible individuals, the method provides a novel and more accurate tool for utilization of time-to-event data, and has also been proven successful when applied to zero-inflated longitudinal binary data.  相似文献   

Effects of irrigation strategies and soils on field grown potatoes: Root distribution   总被引：1，自引：0，他引：1  

Seyed Hamid Ahmadi  Finn PlauborgMathias N. Andersen  Ali Reza SepaskhahChristian R. Jensen  Søren Hansen 《Agricultural Water Management》2011,98(8):1280-1290

Root distribution of field grown potatoes (cv. Folva) was studied in 4.32 m² lysimeters and subjected to full (FI), deficit (DI), and partial root-zone drying (PRD) irrigation strategies. Drip irrigation was applied for all irrigations. Irrigations were run in three different soils: coarse sand, loamy sand, and sandy loam. Irrigation treatments started after tuber bulking and lasted until final harvest with PRD and DI receiving 65% of FI. Potatoes irrigated with water-saving irrigation techniques (PRD and DI) did not show statistically different dry root mass and root length density (RLD, cm root per cm³ soil) compared with root development in fully irrigated (FI) potatoes. Highest RLD existed in the top 30-40 cm of the ridge below which it decreased sharply. The RLD was distributed homogenously along the ridge and furrow but heterogeneously across the ridge and furrow with highest root density in the furrow. Most roots accumulated in the surface layers of coarse sand as compared to the other soil types. In the deep soil profile (30-70 cm) a higher root density was found in loamy sand compared with the sandy loam and coarse sand. Approximately twice the amounts of roots were found below the furrows compared with the corresponding layers below the ridges. The RLD values in the soil profile of the ridges and the furrows followed the Gerwitz and Page model: RLD = α × exp(−β × z). The highest value of surface root density (α) and rate of change in density (β) was found in coarse sand while the lowest values of α and β were found in the sandy loam and loamy sand. The model estimated the effective rooting depth in coarse sand and sandy loam quite well but did slightly overestimate it in the loamy sand. Statistical analysis showed that one α and β value can be used for each soil irrespective of the irrigation treatment. Thus, the effective rooting depths corresponding to root length densities of 0.1 and 0.25 cm cm⁻³ for sandy loam, loamy sand, and coarse sand soils were 99, 141, and 94 cm, and 80, 115, and 78 cm, respectively, calculated from top of the ridge. The findings of this study can be used in practice for efficient use of water and nutrients in the field.  相似文献   

Possible cryptic stock structure for minke whales in the North Atlantic: Implications for conservation and management     

Pia Anderwald  Anna K. Daníelsdóttir  Tore Haug  Finn Larsen  Véronique Lesage  Robert J. Reid  Gísli A. Víkingsson  A. Rus Hoelzel 《Biological conservation》2011,144(10):2479-2489

The minke whale is the last of the great whale species to be hunted in significant numbers. Effective management must include an understanding of how genetic diversity is divided and distributed among putative local populations, and as for many migratory species, this is complicated for the minke whale by large-scale seasonal movement among geographic regions. The problem is that the geographic identity of breeding populations is not known, and instead these whales are predictably found and hunted where different breeding stocks may mix on seasonal feeding grounds. Here we use microsatellite DNA and mtDNA markers to investigate minke whale population structure across the species’ range in the North Atlantic. We found no evidence of geographic structure comparing putative populations in recognized management areas, though some limited structure had been indicated in earlier studies. However, using individual genotypes and likelihood assignment methods, we identified two putative cryptic stocks distributed across the North Atlantic in similar proportions in different regions. Some differences in the proportional representation of these populations may explain some of the apparent differentiation between regions detected previously. The implication would be that minke whales range extensively across the North Atlantic seasonally, but segregate to some extent on at least two breeding grounds. This means that established stock boundaries in the North Atlantic, currently used for management, should be re-considered to ensure the effective conservation of genetic diversity.  相似文献   

Characterization of membranous (M) cells in normal feline conjunctiva-associated lymphoid tissue (CALT)     

Giuliano EA  Finn K 《Veterinary ophthalmology》2011,14(Z1):60-66

Objective To characterize conjunctival lymphoid nodules obtained from the nictitans of healthy cats to determine if the follicle‐associated epithelium (FAE) of conjunctiva‐associated lymphoid tissue (CALT) in this species contains membranous (M)‐cells analogous to those described in other regions of mucosa‐associated lymphoid tissue (MALT). Methods Lymphoid follicles from nictitan bulbar surfaces of 10 healthy cats (20 eyes total) were examined. Nictitans from five cats were harvested immediately post‐mortem and a minimum of 12 lymphoid nodules from each third eyelid were isolated using a Zeiss operating microscope. At least three lymphoid follicles from each eye were examined using light microscopy (LM), transmission electron microscopy (TEM), and scanning electron microscopy (SEM) using standard fixation and embedding protocols. Nictitan‐lymphoid follicles from another five healthy cats were processed for immunohistochemistry to characterize the distribution of T‐ and B‐lymphocytes present beneath the FAE. Results The FAE overlying CALT from 10 healthy cats demonstrated morphology characteristic of M‐cells including attenuated apical cell surface with blunted microvilli and microfolds, invaginated basolateral membrane forming a cytoplasmic pocket, and diminished distance between the apical and pocket membrane. Immunohistochemistry of lymphoid tissue subtending the FAE demonstrated B‐cell dependent regions in the germinal centers surrounded by T‐cell dependent interfollicular zones. Conclusions Healthy feline CALT contains morphologic features analogous to those described in other regions of MALT. Documentation of feline conjunctival M‐cells is of clinical relevance in the study of primary infectious, allergic, and autoimmune ocular diseases, as well as a potential means of vaccination or drug delivery.  相似文献   

Black plastic mulching,compared to other orchard soil management methods     

Finn Måge 《Scientia Horticulturae》1982,16(2):131-136

Young apple trees planted in soil covered by black plastic had the most vigorous growth and the highest crop. Trees in permanent grass sod had the lowest growth and yield. Those in plots treated with herbicides or cleaned by mechanical methods were intermediate.Soil temperature and moisture content were high under plastic, and the nitrogen content in leaves was high during the first two years, but low later.  相似文献   

Studies on degradation and outflow rate of protein supplements in the rumen of sheep and cattle     

E.R. Ørskov  M. Hughes-Jones  M.E. Elimam 《Livestock Production Science》1983,10(1):17-24

The rates of disappearance (p) of protein from fish-meal, meat-and-bone meal, soya-bean meal, cottonseed meal, linseed-meal and groundnut-meal were described when nylon bags were incubated in the rumens of sheep and cattle given either barley or dried grass. The exponential equation p = a + b (1 ? e^?ct),where a, b and c are constants, e is the natural logarithm, and p the amount disappearing in time, t, was used. There was no consistent difference between the degradabilities determined with sheep and cattle. Degradation was finally combined with different outflow rate (k) and the effective degradability (P) was described as the equation $\text{P}\text{=}\text{a + (bc)}\text{(c + k)}$.  相似文献   

Axonal self-destruction and neurodegeneration     

Raff MC  Whitmore AV  Finn JT 《Science (New York, N.Y.)》2002,296(5569):868-871

Neurons seem to have at least two self-destruct programs. Like other cell types, they have an intracellular death program for undergoing apoptosis when they are injured, infected, or not needed. In addition, they apparently have a second, molecularly distinct self-destruct program in their axon. This program is activated when the axon is severed and leads to the rapid degeneration of the isolated part of the cut axon. Do neurons also use this second program to prune their axonal tree during development and to conserve resources in response to chronic insults?  相似文献   

High intake of added sugar among Norwegian children and adolescents     

Øverby NC  Lillegaard IT  Johansson L  Andersen LF 《Public health nutrition》2004,7(2):285-293

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Responses of plasma Epo and kidney and liver Epo mRNA to hemorrhage in perinatal pigs     

David RB  Blom AK  Harbitz I  Framstad T  Sjaastad ØV 《Domestic animal endocrinology》2002,23(4):507-516

Despite the fact that pig fetuses in late gestation have extensive erythropoiesis, low blood pO₂ and low hemoglobin concentrations, piglets are born without detectable concentrations of plasma erythropoietin (Epo). In the present study, we have examined the hypothesis that long-term hypoxic stimuli are less efficient than short-term stimuli in stimulating Epo production in perinatal pigs. From fetuses collected by hysterectomy 5 days before term, new-born piglets and piglets 2 and 5 weeks old, blood in amounts corresponding to 2% of body weight was withdrawn from the jugular vein. Twenty-four hours later the animals were killed and their kidney and liver Epo mRNA analysed by a competitive RT-PCR assay. Plasma Epo concentration was estimated by a solid-phase, two-site sequential chemiluminescent enzyme immunometric assay. We found that in nearly fully developed fetuses and in new-born piglets, the concentration of Epo mRNA did not increase upon bleeding. This is in contrast to earlier findings in sheep. In 2- and 5-week-old piglets, bleeding was associated with a 12–15-fold increase in kidney Epo mRNA. In the 2- and 5-week-old piglets, bleeding evoked increased translation of Epo mRNA into the protein hormone. Also in new-born piglets, increased plasma levels of Epo accompanied bleeding, whereas significant changes in gene Epo expression were not observed.  相似文献   

Early marine survival and movements of escaped Atlantic salmon Salmo salar L. juveniles from a land‐based smolt farm during autumn     

Ingebrigt Uglem  Finn Økland  Audun H Rikardsen 《Aquaculture Research》2013,44(12):1824-1834

The aim of this study was to examine early marine survival and movements of simulated escaped Atlantic salmon Salmo salar L. pre‐smolt and smolt from a commercial smolt farm during autumn. One‐third of the pre‐smolt most likely died in the immediate vicinity of the release location, whereas the corresponding mortality for smolts was lower (8.5%) during the 5‐week study period. The surviving pre‐smolt left the farm area after 2–3 days, predominantly along the shore. In contrast, most of the surviving smolts left the farm area during the first day and 54% seemed to move away from the shore and adopt a more pelagic movement pattern than pre‐smolt. The number of surviving fish recorded in the fjord decreased throughout the study period, possibly due to a combination of fish migrating out of the fjord or undetected mortality. Compared with existing knowledge on migration of released farmed smolts during spring, our results indicate less directional and slower movement rates during autumn. Only two of the tagged fish were detected upstream in the rivers following release. A rapid dispersion of escapees indicates that the potential for recapturing escapees is limited unless recapture efforts are initiated immediately after escape. Hence, there is a need for development of technology that detects and prevents escapees to enter the sea.  相似文献