Carotenoid biosynthetic pathway in the citrus genus: number of copies and phylogenetic diversity of seven genes   总被引：1，自引：0，他引：1  

Fanciullino AL  Dhuique-Mayer C  Luro F  Morillon R  Ollitrault P 《Journal of agricultural and food chemistry》2007,55(18):7405-7417

The first objective of this paper was to analyze the potential role of allelic variability of carotenoid biosynthetic genes in the interspecific diversity in carotenoid composition of Citrus juices. The second objective was to determine the number of copies for each of these genes. Seven carotenoid biosynthetic genes were analyzed using restriction fragment length polymorphism (RFLP) and simple sequence repeats (SSR) markers. RFLP analyses were performed with the genomic DNA obtained from 25 Citrus genotypes using several restriction enzymes. cDNA fragments of Psy, Pds, Zds, Lcy-b, Lcy-e, Hy-b, and Zep genes labeled with [alpha-(32)P]dCTP were used as probes. For SSR analyses, two primer pairs amplifying two SSR sequences identified from expressed sequence tags (ESTs) of Lcy-b and Hy-b genes were designed. The number of copies of the seven genes ranged from one for Lcy-b to three for Zds. The genetic diversity revealed by RFLP and SSR profiles was in agreement with the genetic diversity obtained from neutral molecular markers. Genetic interpretation of RFLP and SSR profiles of four genes (Psy1, Pds1, Lcy-b, and Lcy-e1) enabled us to make inferences on the phylogenetic origin of alleles for the major commercial citrus species. Moreover, the results of our analyses suggest that the allelic diversity observed at the locus of both of lycopene cyclase genes, Lcy-b and Lcy-e1, is associated with interspecific diversity in carotenoid accumulation in Citrus. The interspecific differences in carotenoid contents previously reported to be associated with other key steps catalyzed by PSY, HY-b, and ZEP were not linked to specific alleles at the corresponding loci.  相似文献   

Factors affecting the retention of rennet in cheese curd     

Bansal N  Fox PF  McSweeney PL 《Journal of agricultural and food chemistry》2007,55(22):9219-9225

The coagulant retained in cheese curd is a major contributor to proteolysis during ripening. The objective of this study was to quantify the effects of several milk-related factors and parameters during cheese manufacture on the retention of coagulant in cheese curd. The amount of coagulant retained in curd was determined by its activity on a synthetic heptapeptide (Pro-Thr-Glu-Phe-[NO2-Phe]-Arg-Leu) using reversed-phase HPLC. The retention of chymosin in cheese curd increased significantly when the pH of milk was reduced at rennet addition below pH 6.1, the pH at whey drainage below pH 5.7, or the average casein micelle size in milk and when the ionic strength of milk was increased. The casein content of milk and the quantity of chymosin added to milk had no significant effect on the retention of chymosin in curd; the quantity of coagulant bound per gram of casein remained unchanged.  相似文献   

Long-term effects of fragmentation and fragment properties on bird species richness in Hawaiian forests   总被引：1，自引：0，他引：1  

David J. Flaspohler  Christian P. Giardina  Patrick Hart  Cassie Ka’apu Lyons 《Biological conservation》2010,143(2):280-288

Forest fragmentation is a common disturbance affecting biological diversity, yet the impacts of fragmentation on many forest processes remain poorly understood. Forest restoration is likely to be more successful when it proceeds with an understanding of how native and exotic vertebrates utilize forest patches of different size. We used a system of forest fragments isolated by volcanic activity 153 years ago in Hawaii to examine how long-term fragmentation, as well as fragment size and structural features affect the richness of native and exotic bird species. The total number of bird species increased rapidly with forest fragment size, with most of the native species pool found in patches <3 ha. Smaller fragments were dominated by native bird species with several exotic bird species found only in the largest fragments, suggesting that exotic bird species in this landscape show greater area-sensitivity than native species. We used airborne scanning light detection and ranging (LiDAR) to assess whether fragment area was correlated with estimates of fragment vegetation volume as well as measures of tree height. Fragment area was highly correlated with vegetation volume, maximum tree height, and canopy height heterogeneity, and these variables were strong predictors of bird richness, demonstrating that remote sensing can provide key insights into the relationship between fragment structural attributes and biodiversity indicators. Overall, this work demonstrates the value of conserving small remnant mid-elevation forest patches for native birds in Hawaii. This work also provides insight into how newly created forest patches might be used by native and exotic bird species in Hawaii.  相似文献   

Growth rates of rainbow smelt in Lake Champlain: effects of density and diet     

Donna L. Parrish  Lars G. Rudstam  Patrick J. Sullivan 《Ecology of Freshwater Fish》2011,20(4):503-512

Stritzel Thomson JL, Parrish DL, Parker‐Stetter SL, Rudstam LG, Sullivan PJ. Growth rates of rainbow smelt in Lake Champlain: effects of density and diet. Ecology of Freshwater Fish 2010. © 2010 John Wiley & Sons A/S Abstract – We estimated the densities of rainbow smelt (Osmerus mordax) using hydroacoustics and obtained specimens for diet analysis and groundtruthed acoustics data from mid‐water trawl sampling in four areas of Lake Champlain, USA–Canada. Densities of rainbow smelt cohorts alternated during the 2‐year study; age‐0 rainbow smelt were very abundant in 2001 (up to 6 fish per m²) and age‐1 and older were abundant (up to 1.2 fish per m²) in 2002. Growth rates and densities varied among areas and years. We used model selection on eight area–year‐specific variables to investigate biologically plausible predictors of rainbow smelt growth rates. The best supported model of growth rates of age‐0 smelt indicated a negative relationship with age‐0 density, likely associated with intraspecific competition for zooplankton. The next best‐fit model had age‐1 density as a predictor of age‐0 growth. The best supported models (N = 4) of growth rates of age‐1 fish indicated a positive relationship with availability of age‐0 smelt and resulting levels of cannibalism. Other plausible models were contained variants of these parameters. Cannibalistic rainbow smelt consumed younger conspecifics that were up to 53% of their length. Prediction of population dynamics for rainbow smelt requires an understanding of the relationship between density and growth as age‐0 fish outgrow their main predators (adult smelt) by autumn in years with fast growth rates, but not in years with slow growth rates.  相似文献   

Effects of probiotic bacteria on growth parameters and immune defence in Eurasian perch Perca fluviatilis L. larvae under intensive culture conditions     

SNM Mandiki  Sylvain Milla  Neil Wang  Gersande Blanchard  Thierry Djonkack  Stphane Tanascaux  Patrick Kestemont 《Aquaculture Research》2011,42(5):693-703

Two experiments were conducted to examine whether a mixture of bacteria composed of Bacillus licheniformis, Bacillus subtilis and Bacillus pumilus has a beneficial impact on survival, growth, lysozyme activity and total immunoglobulins (Ig) in perch larvae. In experiment 1, control fish were compared with fish receiving bacteria (4.93 × 10⁷ CFU L⁻¹ day⁻¹) through tank water or both through tank water and Artemia metanauplii enriched with two bacteria doses (2 × 10¹⁰ or 4 × 10¹⁰ CFU L⁻¹). Treatments were performed in 40 L triplicate tanks of 200 fish [initial body weight (IBW)=2.3 mg] each, placed in separated recirculating water systems. Experiment 2 evaluated the combining effects of bacteria feeding and densities (10 vs. 20 fish L⁻¹, IBW=9.5 mg). In both experiments, the bacteria added to live food or both live food and water induced higher growth rate at the highest dietary dose and this was associated with higher Ig levels on days 14 and 28. In experiment 2, higher survival was associated to lower type‐2 cannibalism (ingestion of whole prey) at the two dietary bacteria doses, and such positive effect was observed for fish fed bacteria at high density. Bacteria administration through water had no effect on growth and survival. In conclusion, the results show that high dietary concentrations of the mixture of bacteria used have potential stimulating impact on growth, survival, lysozyme activity and total Ig. But, further investigations are needed to demonstrate the optimal doses for emphasizing immune defence status.  相似文献   

Correction to: Identifying crop yield gaps with site- and season-specific data-driven models of yield potential     

Filippi  Patrick  Whelan  Brett M.  Vervoort  R. Willem  Bishop  Thomas F. A. 《Precision Agriculture》2022,23(2):602-602

Precision Agriculture -  相似文献   

Vertebrate-type intron-rich genes in the marine annelid Platynereis dumerilii     

Raible F  Tessmar-Raible K  Osoegawa K  Wincker P  Jubin C  Balavoine G  Ferrier D  Benes V  de Jong P  Weissenbach J  Bork P  Arendt D 《Science (New York, N.Y.)》2005,310(5752):1325-1326

Previous genome comparisons have suggested that one important trend in vertebrate evolution has been a sharp rise in intron abundance. By using genomic data and expressed sequence tags from the marine annelid Platynereis dumerilii, we provide direct evidence that about two-thirds of human introns predate the bilaterian radiation but were lost from insect and nematode genomes to a large extent. A comparison of coding exon sequences confirms the ancestral nature of Platynereis and human genes. Thus, the urbilaterian ancestor had complex, intron-rich genes that have been retained in Platynereis and human.  相似文献   

Numerical simulations of the seasonal circulation patterns and thermohaline structures of Prince William Sound,Alaska     

Jia Wang  Meibing Jin  E. Vincent Patrick  Jennifer R. Allen  David L. Eslinger  Christophee N. K. Mooers  R. Ted Cooney 《Fisheries Oceanography》2001,10(Z1):132-148

A three‐dimensional, primitive‐equation ocean circulation model was applied to Prince William Sound, Alaska (3D‐PWS circulation model), under forcing of an ocean tide, freshwater runoff, surface heat flux, Alaska Coastal Current (ACC) throughflow (inflow/outflow), and daily (synoptic), spatially varying winds. The 3D structures and seasonal cycles of the circulation patterns, temperature, salinity (density), and mixed layer are examined. Freshwater runoff significantly contributes to the basin‐scale cyclonic circulation, which was not addressed in the previous simulations. Two typical circulation regimes, cyclonic and anticyclonic, characterize the complex flow patterns that depend on the intensities of the ACC thoughflow, freshwater discharge, and the synoptic wind. The spring (April–May) circulation pattern is characterized by a weak (maximum current 0.1 ms^?1) anticyclonic flow in the central Sound, while the autumn (September–October) circulation is dominated by a basin‐scale, cyclonic gyre (maximum current 0.2 ms^?1) due to the increase of the ACC throughflow and the maximum freshwater influence. During the summer, the circulation includes the cyclonic and anticyclonic gyres. During the winter, the circulation pattern is controlled by the basin‐scale cyclonic gyre and surface drift driven by the strong north‐easterly (south‐westward) wind forcing. The seasonal cycles of temperature (T) and salinity (S) vs. depth compare well with the observations. The simulated spring and autumn surface circulation patterns compare qualitatively well with the towed ADCP (acoustic Doppler current profilers) flow patterns and dynamic height patterns in the central Sound. An application of this model to zooplankton overwintering is discussed.  相似文献   

Synergistic use of very high-frequency radar and discrete-return lidar for estimating biomass in temperate hardwood and mixed forests   总被引：1，自引：0，他引：1  

Asim Banskota  Randolph H. Wynne  Patrick Johnson  Bomono Emessiene 《Annals of Forest Science》2011,68(2):347-356

• Introduction   

Accurate estimation of aboveground biomass is essential to better understand the carbon cycle in forest ecosystems.  相似文献   

Impact of low hydration of barley grain on β-glucan degradation and lipid transfer protein (LTP1) modifications during the malting process     

Runavot JL  Bakan B  Geneix N  Saulnier L  Moco K  Guillon F  Corbineau F  Boivin P  Marion D 《Journal of agricultural and food chemistry》2011,59(15):8256-8264

One of the objectives of the malting industry is to reduce the energy cost during kilning without major effect on malt quality. In this study, the impact of a low hydration steeping process on lipid transfer protein (LTP1) modifications and β-glucan breakdown was evaluated in low (LH) and high (HH) hydrated malts. LTP1 modifications analyzed by MS/MS revealed acylation, glycation, and disulfide bond breakage in both LH and HH malts. LTP1 free amine content measurement and fluorescence of Maillard protein adducts revealed no significant difference between LH and HH malts. Immunolabeling of LTP1 during malting highlighted the diffusion of the protein from the aleurone layer to the endosperm at the end of steeping in both LH and HH malts. By contrast, a significant higher amount of β-glucans was measured in LH malts after five days of germination, whereas no significant difference between LH and HH malts was revealed through immunostaining of β-glucans or evaluation of the endosperm integrity after seven days of germination. The possibility to reduce the effects of a low hydration steeping process on β-glucan hydrolysis by increasing germination time was discussed.  相似文献