Detecting mislabeling and identifying unique progeny in <Emphasis Type="Italic">Acacia</Emphasis> mapping population using SNP markers     

Asif Javed Muhammad  Mohd Zaki Abdullah  Norwati Muhammad  Wickneswari Ratnam 《林业研究》2017,28(6):1119-1127

Acacia hybrids offer a great potential for paper industry in Southeast Asia due to their fast growth and ability to grow on abandoned or marginal lands. Breeding Acacia hybrids with desirable traits can be achieved through marker assisted selection (MAS) breeding. To develop a MAS program requires development of linkage maps and QTL analysis. Two mapping populations were developed through interspecific hybridization for linkage mapping and QTL analysis. All seeds per pod were cultured initially to improve hybrid yield as quality and density of linkage mapping is affected by the size of the mapping population. Progenies from two mapping populations were field planted for phenotypic and genotypic evaluation at three locations in Malaysia, (1) Forest Research Institute Malaysia field station at Segamat, Johor, (2) Borneo Tree Seeds and Seedlings Supplies Sdn, Bhd. (BTS) field trial site at Bintulu, Sarawak, and (3) Asiaprima RCF field trial site at Lancang, Pahang. During field planting, mislabeling was reported at Segamat, Johor, and a similar problem was suspected for Bintulu, Sarawak. Early screening with two isozymes effectively selected hybrid progenies, and these hybrids were subsequently further confirmed by using species-specific SNPs. During field planting, clonal mislabeling was reported and later confirmed by using a small set of STMS markers. A large set of SNPs were also used to screen all ramets in both populations. A total of 65.36% mislabeled ramets were encountered in the wood density population and 60.34% in the fibre length mapping population. No interpopulation pollen contamination was detected because all ramets found their match within the same population in question. However, mislabeling was detected among ramets of the same population. Mislabeled individuals were identified and grouped as they originated from 93 pods for wood density and 53 pods for fibre length mapping populations. On average 2 meiotically unique seeds per pod (179 seeds/93 pods) for wood density and 3 meiotically unique seeds per pod (174 seeds/53 pods) for fibre length mapping population were found. A single step statistical method was used to evaluate the most informative set of SNPs that could subsequently be used for routine checks for mislabeling in multi-location field trials and for labelling superior clones to protect breeder’s rights. A preliminary set of SNPs with a high degree of informativeness was selected for the mislabeling analysis in conjunction with an assignment test. Two subsets were successfully identified, i.e., 51 SNPs for wood density and 64 SNPs for fibre length mapping populations to identify all mislabeled ramets which had been previously identified. Mislabeling seems to be a common problem due to the complexity involved in the production of mapping populations. Therefore, checking for mislabeling is imperative for breeding activities and for analyses such as linkage mapping in which a correlation between genotypic and phenotypic data is determined.  相似文献   

Distribution patterns of tree,understorey, and detritus biomass in coniferous and broad-leaved forests of Western Himalaya,India     

Javid A. Dar  Mohd Y. Rather  K. Subashree  S. Sundarapandian 《Journal of Sustainable Forestry》2017,36(8):787-805

Forest biomass pools are the major reservoirs of atmospheric carbon in both coniferous and broad-leaved forest ecosystems and thus play an important role in regulating the regional and global carbon cycle. In this study, we measured the biomass of trees, understorey, and detritus in temperate (coniferous and broad-leaved) forests of Kashmir Himalaya. Total ecosystem dry biomass averaged 234.2 t/ha (ranging from 99.5 to 305.2 t/ha) across all the forest stands, of which 223 t/ha (91.9–283.2 t/ha) were stored in above- and below-ground biomass of trees, 1.3 t/ha (0.18–3.3 t/ha) in understorey vegetation (shrubs and herbaceous), and 9.9 t/ha (4.8–20.9 t/ha) in detritus (including standing and fallen dead trees, and forest floor litter). Among all the forests, the highest tree, understorey, and detritus biomass were observed in mid-altitude Abies pindrow and Pinus wallichiana coniferous forests, whereas the lowest were observed in high-altitude Betula utilis broad-leaved forests. Basal area has showed significant positive relationship with biomass (R² = 0.84–0.97, P < 0.001) and density (R² = 0.49–0.87). The present study will improve our understanding of distribution of biomass (trees, understorey, and detritus) in coniferous and broad-leaved forests and can be used in forest management activities to enhance C sequestration.  相似文献   

Streptococcosis in red hybrid tilapia (Oreochromis niloticus) commercial farms in Malaysia     

Najiah Musa  Lee Seong Wei  Nadirah Musa  Ruhil H Hamdan  Lee Kok Leong  Wendy Wee  Mohd Nur Amal  Basiriah M Kutty  & Siti Zahrah Abdullah 《Aquaculture Research》2009,40(5):630-632

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Allelic segregation of sex‐linked microsatellite markers in Nile tilapia (Oreochromis niloticus) and validation of inheritance in YY population     

Nargis Sultana  Mohd Golam Quader Khan  Mostafa Ali Reza Hossain  Md Samsul Alam 《Aquaculture Research》2020,51(5):1923-1932

Stocking of all‐male fingerling produced by direct administration of male hormone 17‐α‐methyltestosterone is the most preferred method for present‐day aquaculture of the Nile tilapia Oreochromis niloticus. However, due to the growing concern of negative impact of steroid hormone in food fish, production of ‘genetically male’ tilapia, which depends on the concrete and thorough understanding of sex determination, has long been a scientific curiosity. The objective of the present study was to identify reliable sex‐linked markers and to evaluate the applicability of those markers in terms of monosex production approach. ‘XY’ neofemales were produced by using synthetic oestrogen and identified through selective breeding and progeny testing. Three females with progeny not deviating from 3:1 sex ratio (male:female) were designated as ‘XY’ neofemales and were used subsequently to produce putative YY progeny. Among the fifteen microsatellite markers tested, marker ARO172 was most informative in differentiating male and female genotypes. Twenty‐seven F₂ fish from three families were identified as putative YY males based on marker genotyping, and four of them were crossed to produce F₃ to validate marker association by progeny testing. The YY males produced 86%–100% male progeny indicating ARO172 a unique sex‐linked marker applicable in marker‐assisted selection.  相似文献   

Assessment of growth condition for a candidate probiotic, <Emphasis Type="Italic">Shewanella algae</Emphasis>, isolated from digestive system of a healthy juvenile <Emphasis Type="Italic">Penaeus monodon</Emphasis>     

Shahram Shakiba Zadeh  Che Roos Saad  Annie Christianus  Mohd Salleh Kamarudin  Kamaruzaman Sijam  Mariana Nor Shamsudin  Vasantha Kumari Neela 《Aquaculture International》2010,18(6):1017-1026

To conquer disease problem in shrimp industries, probiotic biocontrol is a well-known remedy now. The antagonistic ability of separated isolates from different parts of juvenile P. monodon was screened against shrimp Vibrio pathogens, V. parahaemolyticus and V. alginolyticus. The most antagonistic effect was observed for an isolate that primarily identified as Shewanella algae using conventional method followed by Biolog GN and GP microplates. Since adaptability to the host optimum cultural condition of the target organism is of the great importance, response surface methodology, with central composite design, was applied to assess log cell count response of S. algae in different incubation conditions. Therefore, four independent variables were assumed as: temperature (10–50°C), pH (6–10), NaCl concentration (0–50‰) and time (12–60 h). The coefficients of multiple determinations (R ²) for the responses log cell count of S. algae being 0.827. Temperature was the merely significant independent variable that affected the log cell count of the candidate probiotic. The candidate probiotic was revealed a reasonable growth response in quite wide range of temperature, pH and NaCl concentration in which the maximum levels were in same range of optimum shrimp culture.  相似文献   

Rooting pattern and nitrogen uptake of three cauliflower (Brassica oleracea var. botrytis) F1‐hybrids     

Karin Rather  Manfred K. Schenk  Arij P. Everaarts  Siemjan Vethman 《植物养料与土壤学杂志》2000,163(5):467-474

In a two‐year field trial at the sites Ruthe (Germany, loess soil, Orthic Luvisol) and Schermer (The Netherlands, marine clay soil, Eutric Fluvisol) the cauliflower F₁‐hybrids Marine, Lindurian and Linford were compared in their efficiency of N use from limiting and optimum supplies of N. Limiting N was N_min at planting. Optimum N was 250 kg ha^—1 as the sum of inorganic N content of the soil (N_min) at planting and fertilizer‐N. Marine was the most efficient variety, producing the highest shoot dry‐matter and quality (% class 1 curds) at both limiting and optimum N supplies. The N supply did not affect the horizontal and vertical distribution of root length density per soil volume (RLD, cm cm^—3) irrespective of variety. The RLD decreased exponentially with increasing soil depth. Varietal differences in RLD were not found at Ruthe, whereas at Schermer Marine had the highest RLD in all soil layers investigated (0 to 60 cm). No correlations were found between RLD and residual N_min at harvest, except at limiting N supply in Schermer where a strong negative correlation was found between RLD in the 45 to 60 cm layer and N_min at harvest. Thus, varietal differences in N efficiency are speculated to be rather due to different internal N‐use efficiency than to differences in N‐uptake efficiency.  相似文献