Resistance to Streptococcus iniae and its genetic associations with traits of economic importance in Asian seabass (Lates calcarifer)     

Pham Van Khang  Vo Van Nha  Nguyen Hong Nguyen 《Journal of fish diseases》2019,42(12):1657-1666

Streptococcus iniae is one of the most serious aquatic pathogens, causing significant economic losses in marine and freshwater species, including Asian seabass (Lates calcarifer). Controlling this gram‐positive bacterial pathogen has been an issue in aquaculture systems, due to the combined effects of aquaculture intensification and climatic impacts. To date, there have not been any genetic parameter estimates for S. iniae resistance in Asian seabass. The main aim of this study was to examine genetic variation in S. iniae resistance and its genetic correlations with growth and cannibalism in Asian seabass families produced from a breeding programme for high growth in 2016 and 2017. The study included a total of 5,835 individual fish that were offspring of 41 sires and 60 dams (31 half‐sib and 34 full‐sib families). The experimental fish were challenged by intraperitoneal injection with a volume containing 10⁵ CFU (colony‐forming unit)/fish. Resistance to S. iniae was measured as survival rate at 6 hr, 3, 5, 7, 10 and 15 days post‐challenge test. There were significant variations in S. iniae resistance among families at different observation periods (ranging from 24.4% to 80%). Restricted maximum‐likelihood method and mixed model analysis were applied to estimate heritability for S. iniae resistance. The heritability for S. iniae resistance ranged from 7% to 18% across different statistical models used. The common full‐sib effects accounted for 0.1%–2% of the total variation in resistance to S. iniae. Genetic correlations of the S. iniae resistance at 6 hr and 3 days with later post‐challenge test periods were low to moderate. However, these estimates for S. iniae resistance between successive measurement times (5, 7, 10 and 15 days) were high and close to 1. The genetic correlations of resistance with body weights at 180, 270 and 360 days post‐hatch were not significant as well with cannibalism. It is concluded that there is substantial additive genetic variation in resistance to S. iniae, suggesting there is potential for genetic improvement of Asian seabass for resistance to S. iniae through selective breeding.  相似文献   

The potential of informal institutions for marine fisheries management—A case study of a coastal commune in Vietnam          下载免费PDF全文

Dang Bach Nguyen  Salim Momtaz  Nhung Thi Hong Pham 《Fisheries Management and Ecology》2018,25(4):275-286

The potential of informal institutions for sustainable management of marine fisheries was examined. The study is based on both primary data collected through two group discussions and interviews and secondary information, including material related to fishing gear operation and whale worship. It shows that informal institutions, including fisher groups, fishing community norms, fisher's knowledge and whale worship have potential to strengthen institutional, ecological, social and community aspects of sustainable fisheries development. Although these informal institutions are not able to fix completely all the problems faced by formal institutions, they are able to complement and consolidate formal institutions to manage marine fisheries effectively. The findings of this study suggest it is imperative that formal institutions should be improved simultaneously with informal institutions to enhance current management for sustainable marine fisheries development.  相似文献   

Investigation of Polymorphisms in Coding Region of OsHKT1 in Relation to Salinity in Rice     

Quynh-Hoa Pham  Xuan-An Tran  Thi-Nha-Trang Nguyen  Thi-Thuy-Anh Tran  Hai-Yen Hoang  Thi-Hong-Van Nguyen  Thi-Hanh Tang  Thi-Phuc Do 《水稻科学》2016,23(6):334

Rice(Oryza sativa) is sensitive to salinity, but the salt tolerance level differs among cultivars, which might result from natural variations in the genes that are responsible for salt tolerance. High-affinity potassium transporter(HKTs) has been proven to be involved in salt tolerance in plants. Therefore, we screened for natural nucleotide polymorphism in the coding sequence of Os HKT1, which encodes the HKT protein in eight Vietnamese rice cultivars differing in salt tolerance level. In total, seven nucleotide substitutions in coding sequence of Os HKT1 were found, including two non-synonymous and five synonymous substitutions. Further analysis revealed that these two non-synonymous nucleotide substitutions(G50T and T1209A) caused changes in amino acids(Gly17Val and Asp403Glu) at signal peptide and the loop of the sixth transmembrane domain, respectively. To assess the potential effect of these substitutions on the protein function, the 3D structure of HKT protein variants was modelled by using PHYRE2 webserver. The results showed that no difference was observed when compared those predicted 3D structure of HKT protein variants with each other. In addition, the codon bias of synonymous substitutions cannot clearly show correlation with salt tolerance level. It might be interesting to further investigate the functional roles of detected non-synonymous substitutions as it might correlate to salt tolerance in rice.  相似文献   

Frequent use of colistin-based drug treatment to eliminate extended-spectrum beta-lactamase-producing <Emphasis Type="Italic">Escherichia coli</Emphasis> in backyard chicken farms in Thai Binh Province,Vietnam     

Tatsuya Nakayama  Michio Jinnai  Ryuji Kawahara  Khong Thi Diep  Nguyen Nam Thang  Tran Thi Hoa  Le Kieu Hanh  Pham Ngoc Khai  Yoshinori Sumimura  Yoshimasa Yamamoto 《Tropical animal health and production》2017,49(1):31-37

Reports of livestock infections with extended-spectrum beta-lactamase-producing Escherichia coli (ESBL-E) are increasing. Based on interviews conducted over a 6-month period, we found that veterinarians in the Vietnamese province of Thai Binh prefer to prescribe colistin-based drugs (CBD) in chicken farms. We aimed to clarify whether CBD use selects for strains of colistin-resistant ESBL-E. With the cooperation of seven local households, we detected ESBL-E in chickens’ feces after treating chickens with CBD. Phylogenetic groupings and the presence of CTX-M/AmpC genes were determined, and the multi-antibiotic susceptibility of isolates was analyzed. Our results showed that ESBL-E presented in seven chickens’ feces from two households. Seventy-two percent of ESBL-E isolates harbored CTX-M9 and the phylogenetic group A; the colistin minimum inhibitory concentration (MIC) of all isolated ESBL-E ranged from 0.064 to 1 μg mL^?1. Moreover, ESBL-E isolates were used to experimentally select for colistin resistance, and the effect of commercial CBD on ESBL-E was investigated. The results showed that an ESBL-E strain with a colistin MIC of 4 μg mL^?1 was able to grow in media with CBD. Although CBD treatment was effective, in vitro experiments demonstrated that ESBL-E can easily acquire colistin resistance. Therefore, restrictions on colistin use are necessary to prevent the emergence of colistin-resistant bacteria.  相似文献   

Evaluation of soybean for resistance to soybean rust in Vietnam     

T.A. Pham  C.B. Hill  M.R. Miles  B.T. Nguyen  T.T. Vu  T.D. Vuong  T.T. VanToai  H.T. Nguyen  G.L. Hartman 《Field Crops Research》2010

Soybean rust, caused by Phakopsora pachyrhizi Sydow, is a severe foliar disease of soybean [Glycine max (L.) Merr.] that occurs throughout most soybean producing regions of the world. The objective of this research was to evaluate selected soybean genotypes for resistance to soybean rust in Vietnam. Five field experiments in Vietnam were completed from 2006 to 2009. The area-under-the-disease-progress-curve (AUDPC) was calculated for each soybean genotype based on four disease assessments taken during the reproductive growth stages. AUDPC units among soybean genotypes in each experiment differed (P < 0.05). Over the five experiments, the resistant check DT 2000 was most often the genotype with the lowest AUDPC units while the sources of rust resistance (Rpp1-5) did not always have low AUDPC units in each experiment, although PI 230970 (Rpp2) appeared to be more stable. A few genotypes with non-characterized genes for resistance, such as PI 398998, PI 437323, and PI 549017, had the lowest AUDPC units in at least one of the experiments. These genetic resources may be useful for host plant resistance studies and breeding soybeans for rust resistance in Vietnam and other locations like Brazil and the United States that have more recently been inundated with soybean rust. A significant (P < 0.001) experiment × genotype interaction was found when the AUDPC data of 14 soybean genotypes tested in Experiments 1, 2, and 3 were combined and analyzed. This result indicates the potential importance of changing fungal races and/or biotypes that occur in the rust population.  相似文献   

Economic feasibility of recirculating aquaculture systems in pangasius farming     

Pham Thi Anh Ngoc  Miranda P. M. Meuwissen  Le Cong Tru  Roel H. Bosma  Johan Verreth  Alfons Oude Lansink 《Aquaculture Economics & Management (Blackwell Science)》2016,20(2):185-200

This study aims to analyze the economic feasibility of recirculating aquaculture systems (RAS) in pangasius farming in Vietnam. The study uses a capital budgeting approach and accounts for uncertainty in key parameters. Stochastic simulation is used to simulate the economic performance of medium and large farms operating with a traditional system or RAS. Data are obtained through structured surveys and a workshop in the Mekong River Delta. Results show that for large farms, net present value increases from an average of 589,000 USD/ha to 916,000 USD/ha after implementing RAS. Overall, the probability that RAS is a profitable investment is found to be 99% for both farm sizes. With RAS, the crucial parameters determining profitability are price, yield, costs of fingerling, feed, and initial investment. Findings on the robustness of the economic performance of RAS are useful to support public and private decision making towards increasing the sustainability of pangasius production.  相似文献   

Influence of phosphate sorption on dispersion of a Ferralsol     

Dung Viet Pham  Munehide Ishiguro  Ha Thu Thi Tran  Tsutomu Sato 《Soil Science and Plant Nutrition》2013,59(3):356-366

Abstract

Soil dispersion induces soil erosion and colloidal leaching. Nutrients are lost at the same time and this causes water contamination. Phosphate is an essential element for living organisms. Because phosphate influences soil dispersion and it is an important limited resource, this influence must be evaluated well in order to diminish negative effects on soil structure. In this paper, we firstly evaluated the influence of phosphate sorption on soil dispersion by calculating repulsive potential energy between soil particles. Ferralsol, which is a typical soil in rainy tropical regions, was used as the material. The dispersion-flocculation phenomena were investigated with absorbance of soil suspension under different pH, phosphate adsorption and electrolyte concentration in an Na-NO₃-PO₄ system. The repulsive potential energy was calculated based on the diffuse double layer theory and the measured zeta potential. We indicated that the measured absorbance increased with the increase of the repulsive potential energy. The repulsive potential energy increased with increasing phosphate sorption up to about 5 to 20 mmol kg^?1 at all pH, and it induced the soil dispersion, because phosphate sorption increased the negative charge of the soil. After its peak, it decreased with increasing phosphate sorption because the electrolyte concentration increased and the electrolyte screened the electric field near the soil surface. The repulsive potential energy also increased with increasing pH because of the increase of the negative charge of the soil. Even at low pH, after a certain amount of phosphate sorption, the soil dispersed due to the increase of repulsive potential energy, although the soil flocculated before phosphate application. Because the soil dispersion causes soil and phosphorus loss, the influence of soil pH and phosphate sorption on the soil dispersion should be considered for good soil management.  相似文献   

Eucalyptus scab and shoot malformation: A new and serious foliar disease of Eucalyptus caused by Elsinoe necatrix sp. nov.     

Nam Q. Pham  Seonju Marincowitz  Myriam Solís  Tuan A. Duong  Brenda D. Wingfield  Irene Barnes  Bernard Slippers  Jupiter I. Muro Abad  Alvaro Durán  Michael J. Wingfield 《Plant pathology》2021,70(5):1230-1242

  相似文献   

New monoterpene glycosides from Paeonia lactiflora     

Braca A  Kiem PV  Yen PH  Nhiem NX  Quang TH  Cuong NX  Minh CV 《Fitoterapia》2008,79(2):117-120

Three new monoterpene glycosides named 4-O-methyl-paeoniflorin (1), isopaeoniflorin (2), and isobenzoylpaeoniflorin (3), together with two known monoterpene glycosides, paeoniflorin (4) and benzoylpaeoniflorin (5), were isolated from the roots of Paeonia lactiflora. Their structures were established on the basis of spectral and chemical evidence.  相似文献   

Fucose-Rich Sulfated Polysaccharides from Two Vietnamese Sea Cucumbers Bohadschia argus and Holothuria (Theelothuria) spinifera: Structures and Anticoagulant Activity     

Nadezhda E. Ustyuzhanina  Maria I. Bilan  Andrey S. Dmitrenok  Eugenia A. Tsvetkova  Sofya P. Nikogosova  Cao Thi Thuy Hang  Pham Duc Thinh  Dinh Thanh Trung  Tran Thi Thanh Van  Alexander S. Shashkov  Anatolii I. Usov  Nikolay E. Nifantiev 《Marine drugs》2022,20(6)

Fucosylated chondroitin sulfates (FCSs) FCS-BA and FCS-HS, as well as fucan sulfates (FSs) FS-BA-AT and FS-HS-AT were isolated from the sea cucumbers Bohadschia argus and Holothuria (Theelothuria) spinifera, respectively. Purification of the polysaccharides was carried out by anion-exchange chromatography on DEAE-Sephacel column. Structural characterization of polysaccharides was performed in terms of monosaccharide and sulfate content, as well as using a series of non-destructive NMR spectroscopic methods. Both FCSs were shown to contain a chondroitin core [→3)-β-d-GalNAc-(1→4)-β-d-GlcA-(1→]_n bearing sulfated fucosyl branches at O-3 of every GlcA residue in the chain. These fucosyl residues were different in pattern of sulfation: FCS-BA contained Fuc2S4S, Fuc3S4S and Fuc4S at a ratio of 1:8:2, while FCS-HS contained these residues at a ratio of 2:2:1. Polysaccharides differed also in content of GalNAc4S6S and GalNAc4S units, the ratios being 14:1 for FCS-BA and 4:1 for FCS-HS. Both FCSs demonstrated significant anticoagulant activity in clotting time assay and potentiated inhibition of thrombin, but not of factor Xa. FS-BA-AT was shown to be a regular linear polymer of 4-linked α-L-fucopyranose 3-sulfate, the structure being confirmed by NMR spectra of desulfated polysaccharide. In spite of considerable sulfate content, FS-BA-AT was practically devoid of anticoagulant activity. FS-HS-AT cannot be purified completely from contamination of some FCS. Its structure was tentatively represented as a mixture of chains identical with FS-BA-AT and other chains built up of randomly sulfated alternating 4- and 3-linked α-L-fucopyranose residues.  相似文献