Multiple Ebola virus transmission events and rapid decline of central African wildlife     

Leroy EM  Rouquet P  Formenty P  Souquière S  Kilbourne A  Froment JM  Bermejo M  Smit S  Karesh W  Swanepoel R  Zaki SR  Rollin PE 《Science (New York, N.Y.)》2004,303(5656):387-390

Several human and animal Ebola outbreaks have occurred over the past 4 years in Gabon and the Republic of Congo. The human outbreaks consisted of multiple simultaneous epidemics caused by different viral strains, and each epidemic resulted from the handling of a distinct gorilla, chimpanzee, or duiker carcass. These animal populations declined markedly during human Ebola outbreaks, apparently as a result of Ebola infection. Recovered carcasses were infected by a variety of Ebola strains, suggesting that Ebola outbreaks in great apes result from multiple virus introductions from the natural host. Surveillance of animal mortality may help to predict and prevent human Ebola outbreaks.  相似文献   

A physical map of the 1-gigabase bread wheat chromosome 3B   总被引：2，自引：0，他引：2  

Paux E  Sourdille P  Salse J  Saintenac C  Choulet F  Leroy P  Korol A  Michalak M  Kianian S  Spielmeyer W  Lagudah E  Somers D  Kilian A  Alaux M  Vautrin S  Bergès H  Eversole K  Appels R  Safar J  Simkova H  Dolezel J  Bernard M  Feuillet C 《Science (New York, N.Y.)》2008,322(5898):101-104

As the staple food for 35% of the world's population, wheat is one of the most important crop species. To date, sequence-based tools to accelerate wheat improvement are lacking. As part of the international effort to sequence the 17-billion-base-pair hexaploid bread wheat genome (2n = 6x = 42 chromosomes), we constructed a bacterial artificial chromosome (BAC)-based integrated physical map of the largest chromosome, 3B, that alone is 995 megabases. A chromosome-specific BAC library was used to assemble 82% of the chromosome into 1036 contigs that were anchored with 1443 molecular markers, providing a major resource for genetic and genomic studies. This physical map establishes a template for the remaining wheat chromosomes and demonstrates the feasibility of constructing physical maps in large, complex, polyploid genomes with a chromosome-based approach.  相似文献   

Frequent long-distance plant colonization in the changing Arctic     

Alsos IG  Eidesen PB  Ehrich D  Skrede I  Westergaard K  Jacobsen GH  Landvik JY  Taberlet P  Brochmann C 《Science (New York, N.Y.)》2007,316(5831):1606-1609

The ability of species to track their ecological niche after climate change is a major source of uncertainty in predicting their future distribution. By analyzing DNA fingerprinting (amplified fragment-length polymorphism) of nine plant species, we show that long-distance colonization of a remote arctic archipelago, Svalbard, has occurred repeatedly and from several source regions. Propagules are likely carried by wind and drifting sea ice. The genetic effect of restricted colonization was strongly correlated with the temperature requirements of the species, indicating that establishment limits distribution more than dispersal. Thus, it may be appropriate to assume unlimited dispersal when predicting long-term range shifts in the Arctic.  相似文献   

Beyond occurrence: Body condition and stress hormone as integrative indicators of habitat availability and fragmentation in the common toad     

Agnès Janin  Jean-Paul Léna  Pierre Joly 《Biological conservation》2011,(3):1008-1016

Availability and fragmentation of habitat are today identified as key determinants of population maintenance. Disentangling their relative effects is of crucial importance to adequately manage landscapes. However, the classical use of occurrence or abundance data as proxy to assess the responses of populations could be insufficient to detect less drastic impacts than short-term population extinction. We evaluated the effects of both habitat availability and fragmentation at three spatial scales on both the occurrence and two “physiological state” indicators (body condition and level of stress hormone) reflecting the physical state of common toads (Bufo bufo). Our study showed that occurrence was negatively affected only by habitat availability at the largest spatial scale whereas the both physiological state indicators studied at the population scale are significantly altered by both habitat availability and fragmentation at the finest spatial scale. Results obtained with occurrence and physiological state approaches substantially diverge, which highlights the need to also investigate proximal processes to deeply understand how populations are threatened by landscape modifications. The use of physiological state indicators, particularly of body condition, powerful and easy to obtain, could be particularly relevant to detect early warnings of population decline allowing a management before extinction. Only a complete investigation of the potential impacts of landscape on the different population processes could offer a realistic picture of the requirements of populations to avoid drastic alterations.  相似文献   

Adapting ecotoxicological tests based on earthworm behavior to assess the potential effectiveness of forest soil liming     

Apolline Auclerc  Johanne Nahmani  Pierre Huguier  Yvan Capowiez  Delphine Aran  François Guérold 《Pedobiologia》2011

Two laboratory experiments were carried out to determine the potential effects of lime application on the behavior of earthworms inoculated in an acidified forest soil from Vosges Mountains. Several field soils were studied: (i) a non-limed soil that had received decades of atmospheric acid depositions $({\text{pH}}_{{\text{H}}_2\text{O}}=3.9)$, (ii) an in situ limed soil that had been limed 6 years before at 2.5 t ha^?1 $({\text{pH}}_{{\text{H}}_2\text{O}}=4.2)$ and (iii) in vitro limed soils composed of non-limed soil mixed with several lime amounts in the laboratory corresponding to field rates of 1, 2.5, 5, 10 and 20 t ha^?1. Firstly, we adapted the earthworm avoidance test (ISO, 2006) by using Eisenia fetida as the model organism and Lumbricus castaneus, a local species, to determine earthworm preference between non-limed and limed soils. Secondly, a cast production (CP) study was performed according to Capowiez et al. (2009) with Lumbricus terrestris, in seven different treatments (non-limed soil, in situ limed and five in vitro limed soils with pH from 5 to 6.3). Both species avoided the non-limed soil in favour of in situ and in vitro limed soils for both species. Results of the CP bioassay showed that the bioturbation behavior of L. terrestris significantly increased with the increase of soil pH, following a dose–response curve. However, in the long term (>6 years), the application of lime was insufficient to significantly improve soil conditions for enhancing earthworm activity. In conclusion, we may recommend this kind of earthworm laboratory tests with field soils to assess any changes in soil quality over time due to liming application.  相似文献   

Multiple mechanisms account for resistance to sterol 14α-demethylation inhibitors in field isolates of Mycosphaerella graminicola     

Leroux P  Walker AS 《Pest management science》2011,67(1):44-59

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Diversity and fitness of <Emphasis Type="Italic">Plasmopara viticola</Emphasis> isolates resistant to QoI fungicides     

Marie-France Corio-Costet  Marie-Cécile Dufour  Jérémy Cigna  Pierre Abadie  Wei-Jen Chen 《European journal of plant pathology / European Foundation for Plant Pathology》2011,129(2):315-329

The effectiveness of Quinone outside Inhibitor (QoI) fungicides against grape downy mildew in European vineyards has significantly decreased in the last decade. One nucleotide polymorphism, G143A in the cytochrome b gene of Plasmopara viticola, is involved in resistance to QoIs. Previous genetic examination on the mitochondrial genomes showed four major haplotypes (IR, IS, IIR, IIS) coexisting in European vineyards. A resistant allele (G143A) was present in IR and IIR haplotypes. The purpose of the present study was to estimate the diversity of the different mitochondrial haplotypes and their distribution in QoI-resistant populations before evaluating the potential cost of the resistant mutation G143A in P. viticola population. From 2000 to 2004, the frequencies of resistant isolates ranged from 0% to 23.25% with an average of 4.64 % among the populations examined. To evaluate the fitness of sensitive and resistant isolates, a comparison of different biological parameters including latent period, spore production and infection frequency was performed, enabling a fitness index (F_I) to be determined. Resistant isolates exhibited greater infection frequency than sensitive isolates, whereas no significant difference was found in sporulation ability and latent period between sensitive and resistant isolates. To further investigate competitiveness among isolates, an assay including two resistant isolates in different proportion with a sensitive isolate was conducted on eight asexual growing cycles in the absence of a QoI fungicide. The competitiveness of resistant isolates varied according to their fitness parameters, suggesting that there is no noticeable cost of QoI resistance in controlled conditions in Plasmopara viticola.  相似文献   

Deriving river networks and catchments at the European scale from medium resolution digital elevation data   总被引：2，自引：0，他引：2  

Roberto Colombo  Jürgen V. Vogt  Pierre Soille  Maria L. Paracchini  Alfred de Jager 《CATENA》2007,70(3):296-305

The extraction of drainage networks and catchment boundaries from digital elevation models (DEMs) has received considerable attention in recent years and is recognized as a viable alternative to traditional surveys and the manual evaluation of topographic maps. However, most studies have covered limited areas due to the lack of detailed information and/or the lack of highly efficient algorithms. In this paper we present an application that delineates river networks and catchment boundaries across the European continent from a medium resolution (250 m) DEM. We exploit novel algorithms based on the concepts of mathematical morphology and implement a landscape stratification for drainage density.A flow direction grid is computed using an efficient algorithm for the removal of spurious pits. River networks are then derived by imposing a variable threshold for the minimum contributing area needed to form and maintain a channel. This is achieved through a landscape stratification that reflects the ability of the terrain to develop different drainage densities. It is shown that the analysis of environmental characteristics coupled with the analysis of local slope versus contributing area enables river network mapping with a spatially varying drainage density. The result has been validated by comparing the derived data to digital river and catchment data from other sources and with varying scales of observation.  相似文献   

Comparison of Coleoptera assemblages from a recently burned and unburned black spruce forests of northeastern North America     

Michel Saint-Germain  Pierre Drapeau 《Biological conservation》2004,118(5):583-592

Several insect groups have adapted to fire cycles in boreal forests, and can efficiently use new habitats created by fire. Our study aimed at producing a first characterization of post-fire Coleoptera assemblages of black spruce forests of eastern North America. For two years, we sampled Coleoptera using flight-interception traps in burned stands of contrasting age and structure in a 5097-ha wildfire and in neighbouring unburned mature stands. More than 40 species were exclusively captured in burned stands. Time elapsed since fire and proximity of unburned forests were the most significant parameters affecting Coleoptera assemblages. Stand age and structure had limited effects on assemblage structure; the Scolytid Polygraphus rufipennis Kirby was the only common species to clearly favor older stands. Fire-associated Coleoptera assemblages found in our study area were clearly distinct from those found in similar unburned stands; we should thus be conservative in our management approach concerning recently burned stands.  相似文献   

Soil properties and the macrofauna community in abandoned irrigated rice fields of northeastern Argentina     

Patricia J. Folgarait  Fabien Thomas  Thierry Desjardins  Michel Grimaldi  Ichiro Tayasu  Pierre Curmi  Patrick M. Lavelle 《Biology and Fertility of Soils》2003,38(6):349-357

This study compared soil physical, chemical, and biological characteristics between natural grassland and recently abandoned rice fields in order to identify those variables that might explain the observed increase of Camponotus punctulatus anthills in abandoned rice paddy fields from Northern Argentina. Mainly due to a reduction of macropores and mesopores, overall porosity decreased by around 6% and bulk density was about 7% greater, in the 0- to 10- and 10- to 20-cm layers of the abandoned rice fields. Carbon and nitrogen content from organic matter increased (29% and 41% respectively for the 0- to 20-cm horizon) during cultivation but decreased (38% and 24%) 2 years after the last rice harvest. Forty percent of natural grassland-organic matter and 30% of abandoned rice-organic matter mineralized in less than 2 years. There was a different community structure between the abandoned rice fields and the undisturbed natural grassland and only a 20.6% (i.e. only 19 species from a total of 92) overlap in species composition. The abundance of macrofauna was greater in abandoned rice fields (2,208 individuals m^–2) in comparison to natural grasslands (288 ind m^–2) due to higher densities of small earthworms and Camponotus punctulatus ants; however, the Shannon index showed lower values in comparison to natural grasslands. Earthworms and C. punctulatus in the abandoned rice fields showed a change in their ¹³C signature indicating a switch in diet from natural grassland organic matter (C4) to organic matter from rice (C3). Our results indicate that the effects of rice cultivation practices did not seem to produce any physical or trophic limitations to recolonization by the macrofauna. It seems that changes in overall soil conditions have favored a change in the construction behavior of C. punctulatus which, in combination with population increases, could explain the explosion in number of anthills.  相似文献